BAC Information

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BAC

Clone NameMSMg01-544O13
Chromosome5 (Build37)
Map Location 26,725,298 - 26,725,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream gene4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544O13.T7 (MSMg01no544_o13.b1)MSMg01-544O13.TJ (MSMg01no544_o13.g1)
ACCAG610097AG610098
length740793
length of high quality
(start - end)
475 (54 - 528)309 (84 - 392)
definitionCHROMAT_FILE: MSMg01no544_o13.b1 PHD_FILE: MSMg01no544_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:44 2005CHROMAT_FILE: MSMg01no544_o13.g1 PHD_FILE: MSMg01no544_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCTGACTAAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTACTTCTCCCATATAGCACTCTATAACACACATTC
ATTCATGATCCCGTGAACCAGATATTGAGTAATATACAGCCATTGTTCTA
GAGCTGCTGCGGATATAAAAACACTCAGAAAGGAATATAAAATAAATCAG
GAAGGCCAGAGCCATGTGCCTCAGTTTATTTGCAATAGAGCATCAGTGAT
TGCGGAGAACAATGGCTTCCCTTTCGTTCTGCCCTGAAAGGGTCAGAGCC
CTTAACTGGGGAAAGGTCATGGGTCGTTCCTCCTGAAAGGGAGGGATGTC
TAAACATGACTTTCTGTGAGCCAGAATTTTTTCTTGTTCCTAGTCAAGAG
TTAATATTTACCCTGAGAGGAAGATGTCCTTGGGTCTTCAGATAACAGTT
TCTTCTTCTGAAATTCATTCTTGTTATGAGAAAATGACTCCAAAATAGAT
AATATTGTTTGCCAGATGCAACTAAGTAAAAATGTTATTTTTTGGAGCAA
AATTAGCAAAGTCATATCTCATGCTTTTAAGCTGTAGAAATCAGTAAATC
TTTGCTACTTGCCAGCAGAGCAGTAATCCCTCTGTTTCTTTAAGGCATTC
TTGAAGCTGGTCTTCATCCAGTGATCACCACTTAGCCGATATAATGACCT
TCCATGGCTTTGCTGGGAAAAAACTTTTTGAAAGATGCTG
ATGTCAGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTTTATTCACAGGA
GCAAATATCACTATGTAGTTCATCTACATGCAAAATGGACATGAAATTAT
ACCAACAAAATGTCTAGGGGAATTCGTCTATCATTAAGTCTCATCTCATT
AAATCATCCTGACAGTCCATTCTCCTTCATTGGCTAAGAAATCCATCTTT
AAATTAGCAAAAGCTGATTCTGCTTCACTTTTACCTTCTGTAGAGAAAGC
CATGTGTGGCTTGAATACACTTGTTCATGTATGTGCATGCGTGCGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTCA
TTATTCTTTTTTTATTATCTTTTACTACACTTTATTCTATTTTTTTTCCT
TTTCTCTCTCGCCTTACTCCTCTTTTTTTTCACTTTAATCAATATTCTAT
TTAATCCTATATTTTATATTATATCCATTCTTTTCCTATATTAATATCCT
TCCCTTACTTTCATTACTATTATTAATATTTTCTACGATTATATTTTTTT
GTTATGATAGCCCTCTCTTTTTTGCTAATACTCTACTATTTTTACTTTTA
TCCACACCCTTTTTTTAATTATATATTTATCATTTGTATTTTTTTTTCCT
ATATCTTGTCTCTTCTTTTTATCCAGTTTTTTTTTGACTCTTATATTTTT
TATATTTTTATCTATTATTTGACCTTTTTATTGCCAGTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_o13.g1 MSMg01no544_o13.g1 CHROMAT_FILE:
MSMg01no544_o13.g1 PHD_FILE: MSMg01no544_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:44 2005
         (309 letters)



>mm_chr5_26725171_26725879
          Length = 709

 Score =  547 bits (283), Expect = e-160
 Identities = 306/317 (96%), Gaps = 8/317 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtttattcacaggagcaaatatcactatgtagttcatctacatgcaaaatggacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagtttattcacaggagcaaatatcactatgtagttcatctacatgcaaaatggacatg 385

                                                                       
Query: 61  aaattataccaacaaaatgtctaggggaattcgtctatcattaagtctcatctcattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaattataccaacaaaatgtctaggggaattcgtctatcattaagtctcatctcattaaa 325

                                                                       
Query: 121 tcatcctgacagtccattctccttcattggctaagaaatccatctttaaattagcaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 tcatcctgacagtccattctccttcattggctaagaaatccatctttaaattaacaaaag 265

                                                                       
Query: 181 ctgattctgcttcacttttaccttctgtagagaaagccatgtgtggcttgaatacacttg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ctgattctgcttcacttttaccttctgtagagaaagccatgtatggcttgaatacacttg 205

                                                                       
Query: 241 ttcatgtatgtgcatgcgtgcgt--gt--gtgtgtg----tgtgtgtgtgtgtgtgtgtg 292
           ||||||||||||| |||||||||  ||  |||||||    ||||||||||||||||||||
Sbjct: 204 ttcatgtatgtgcgtgcgtgcgtgagtgcgtgtgtgtttctgtgtgtgtgtgtgtgtgtg 145

                            
Query: 293 tgtgtgtgtgtgtgtgt 309
           |||||||||||||||||
Sbjct: 144 tgtgtgtgtgtgtgtgt 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)