Query= MSMg01no545_f01.b1 MSMg01no545_f01.b1 CHROMAT_FILE:
MSMg01no545_f01.b1 PHD_FILE: MSMg01no545_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:15 2005
(542 letters)
>mm_chr5_134794755_134795696
Length = 942
Score = 1002 bits (518), Expect = 0.0
Identities = 528/532 (99%), Gaps = 2/532 (0%)
Strand = Plus / Minus
Query: 13 tgtgtaggctaggttggcttggaactcagagatccatctgtctgtgtctcccgagtgcag 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tgtgtaggctaggttggcttggaactcagagatccatctgtctgtgtctcccgagtgcag 879
Query: 73 ggattataggcatgtgcaaccagtatgtctattatctcagcacttggaaggctgaggtgg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ggattataggcatgtgcaaccagtatgtctattatctcagcacttggaaggctgaggtgg 819
Query: 133 gtagatctctgtgagttcaaggccagcctatactacttagtgagttctaggacagacaga 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gtagatctctgtgagttcaaggccagcctatactacttagtgagttctaggacagacaga 759
Query: 193 ctgcatagtgagactctgtctcaaaaaatcaagccaagccaaaccaagcaaagtcaaggt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctgcatagtgagactctgtctcaaaaaatcaagccaagccaaaccaagcaaagtcaaggt 699
Query: 253 acggagcatctaaggaacaattctagaggttgatcgttgccagggggtctgaagctctct 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 acggagcatctaaggaacaattctagaggttgatcgttgccagggggtctgaagctctct 639
Query: 313 ttaactctccaacggtaccaaagtacacatgtgatacacacacatacattcaagcgaaat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttaactctccaacggtaccaaagtacacatgtgatacacacacatacattcaagcgaaat 579
Query: 373 acataaaagaaagatatacataaaagaaaagaaatctaaatatatacaaaagaaaaaaat 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 acataaaagaaagatatacataaaagaaaagaaatctaaatatatacaaaagaaaaaaat 519
Query: 433 ctaattttttggggttttttttttttttttttttt--gggtttctgagacagggtttctc 490
||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 518 ctaattttttgggttttttttttttttttttttttttggttttctgagacagggtttctc 459
Query: 491 tgtgtagccctggctgtcctggaactcactctatagaccaggctggcctcga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgtgtagccctggctgtcctggaactcactctatagaccaggctggcctcga 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_f01.g1 MSMg01no545_f01.g1 CHROMAT_FILE:
MSMg01no545_f01.g1 PHD_FILE: MSMg01no545_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:15 2005
(647 letters)
>mm_chr5_134781422_134782469
Length = 1048
Score = 1214 bits (628), Expect = 0.0
Identities = 643/648 (99%), Gaps = 1/648 (0%)
Strand = Plus / Plus
Query: 1 aatttttaggacctctgcttgctctggtcaactccactcactcagtccctgcttgctgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttttaggacctctgcttgctctggtcaactccactcactcagtccctgcttgctgcg 260
Query: 61 gcccacagatttatttatgattatacttaagtatgctgtagctgacttcagatgcaccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccacagatttatttatgattatacttaagtatgctgtagctgacttcagatgcaccag 320
Query: 121 aagagggcgtcagatctcattatcggtggttgtgatctaccatgtggttgctgggatttg 180
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 321 aagagggcgtcagatctcattatcggtggttgtgatccaccatgtgattgctgggatttg 380
Query: 181 aactcaggacctttggaagagcagtcagtgctcttacccactgagctattttaccaaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcaggacctttggaagagcagtcagtgctcttacccactgagctattttaccaaccc 440
Query: 241 agtaattattttttaaaatgtggctttgaatttatattttaggtgtgtttaaggcagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaattattttttaaaatgtggctttgaatttatattttaggtgtgtttaaggcagttt 500
Query: 301 attgatgttggtttatcttgg-agtcttgacatctattataaaaggctgacatttgccgc 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 501 attgatgttggtttatcttgggagtcttgacatctattataaaaggctgacatttgcctc 560
Query: 360 atacaattagtaaacacactgtgccttgcaaaccgaagaccagcaagagggatctggtgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacaattagtaaacacactgtgccttgcaaaccgaagaccagcaagagggatctggtgt 620
Query: 420 ggctcagtgccaccaagctacaccccagcccacaactcttccacgagggatccagataca 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctcagtgccaccaagctacatcccagcccacaactcttccacgagggatccagataca 680
Query: 480 gccaactgaccagaccccctcagcttcccaaggcctttcagactctatacactgtgtaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccaactgaccagaccccctcagcttcccaaggcctttcagactctatacactgtgtaaa 740
Query: 540 acctgttaccatgccaaatatttttcctaatttcattatccatattacttatagtttcaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acctgttaccatgccaaatatttttcctaatttcattatccatattacttatagtttcaa 800
Query: 600 aaaaagggccaaaccatgagcaagaaatggacaaatccaagttgacac 647
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaagggccaaaccatgagcaagaaatggacaaatccaagttgacac 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
