BAC Information

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BAC

Clone NameMSMg01-545I22
Chromosome5 (Build37)
Map Location 87,207,469 - 87,208,061
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I22.T7 (MSMg01no545_i22.b1)MSMg01-545I22.TJ (MSMg01no545_i22.g1)
ACCAG610591AG610592
length733730
length of high quality
(start - end)		657 (37 - 693)593 (72 - 664)
definitionCHROMAT_FILE: MSMg01no545_i22.b1 PHD_FILE: MSMg01no545_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:33 2005CHROMAT_FILE: MSMg01no545_i22.g1 PHD_FILE: MSMg01no545_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
TCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTT
TTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGGGTTTGTTT
ATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCAT
CCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTT
CTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTC
ATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGG
TTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTAC
CTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAATTAGATCT
TCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCT
TTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAAGTGATA
TGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTGG
TATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGA
GTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGAT
CTGTTGTTATGTCTCCCTTTTCATTTCTGATTN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGTATACAAAGACAAGCTGAGCATGAGAAA
AACATGTGTTTCTAGAGAAACACACAAAGGACAGTTTATTTAGCTGATTA
TCAATAGCAAGCAGTAACAAGCAATCTGAAATAAAGCCACTCCTTTCTGC
TGTGTCTGGAAGACACATGAAAACACATTCCAGGAACATTTCTGTGTTTT
GAAGAAATCTAGTCACAAGACTTTTGTCGAGTTTTCTTGGAGGGTTTCCA
CAAGCACTTAGAATTCTCCTCACATGACTCCATTGCTGGGTTATATTTTG
GCAACTCTGGAAGACAGTTTCCTTGATGTCTTCCACCCCCTCTGGCTCTT
ATAATCTTTCTACATCCTCTTCTGCATAGTTCTGGGCCCTGTGAGCTAAG
GTTTAATGAAGACATCCCATTTAGTGTTCCCAAGTCTCTCACTCTCTGCA
AGTTTTCCATTTGTGAGTTTCACAGTTGTGAGACTGTTACTGTCTGTCTA
CCCTCCACAAGCCTAATTTTGTATCTGTTTTCTTTTTGATAACCTACTAA
GCCTAATATGTGAATTGCCCATATAGTCATGGGTGTGGGGTCATTCAGTG
TTGCTTTGTCAACCTACCAATGGCTATACCCTTAAATAAAATTGGCTCTT
CCTCCTCTAAAATAATCCAATGTCCATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i22.g1 MSMg01no545_i22.g1 CHROMAT_FILE:
MSMg01no545_i22.g1 PHD_FILE: MSMg01no545_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:33 2005
         (593 letters)



>mm_chr5_87207269_87208261
          Length = 993

 Score = 1123 bits (581), Expect = 0.0
 Identities = 590/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatacaaagacaagctgagcatgagaaaaacatgtgtttctagagaaacacacaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatacaaagacaagctgagcatgagaaaaacatgtgtttctagagaaacacacaaagga 260

                                                                       
Query: 61  cagtttatttagctgattatcaatagcaagcagtaacaagcaatctgaaataaagccact 120
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cagtttatttagctgactatcaatagcaagcagtaacaagtaatctgaaataaagccact 320

                                                                       
Query: 121 cctttctgctgtgtctggaagacacatgaaaacacattccaggaacatttctgtgttttg 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttctgctgtgtctggaaaacacatgaaaacacattccaggaacatttctgtgttttg 380

                                                                       
Query: 181 aagaaatctagtcacaagacttttgtcgagttttcttggagggtttccacaagcacttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaatctagtcacaagacttttgtcgagttttcttggagggtttccacaagcacttag 440

                                                                       
Query: 241 aattctcctcacatgactccattgctgggttatattttggcaactctggaagacagtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattctcctcacatgactccattgctgggttatattttggcaactctggaagacagtttc 500

                                                                       
Query: 301 cttgatgtcttccaccccctctggctcttataatctttctacatcctcttctgcatagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgatgtcttccaccccctctggctcttataatctttctacatcctcttctgcatagtt 560

                                                                       
Query: 361 ctgggccctgtgagctaaggtttaatgaagacatcccatttagtgttcccaagtctctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggccctgtgagctaaggtttaatgaagacatcccatttagtgttcccaagtctctca 620

                                                                       
Query: 421 ctctctgcaagttttccatttgtgagtttcacagttgtgagactgttactgtctgtctac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctctgcaagttttccatttgtgagtttcacagttgtgagactgttactgtctgtctac 680

                                                                       
Query: 481 cctccacaagcctaattttgtatctgttttctttttgataacctactaagcctaatatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctccacaagcctaattttgtatctgttttctttttgataacctactaagcctaatatgt 740

                                                                
Query: 541 gaattgcccatatagtcatgggtgtggggtcattcagtgttgctttgtcaacc 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattgcccatatagtcatgggtgtggggtcattcagtgttgctttgtcaacc 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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