Query= MSMg01no546_m13.b1 MSMg01no546_m13.b1 CHROMAT_FILE:
MSMg01no546_m13.b1 PHD_FILE: MSMg01no546_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:11 2005
(705 letters)
>mm_chr5_8036145_8037249
Length = 1105
Score = 1035 bits (535), Expect = 0.0
Identities = 586/611 (95%), Gaps = 13/611 (2%)
Strand = Plus / Minus
Query: 9 ggaattcactctgtataccaggctggcctcgaacttagaaatccacctgcctctgcctcc 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggaattcactctgtagaccaggctggcctcgaacttagaaatccacctgcctctgcctcc 539
Query: 69 caagtgctgggattaaaggcgtgcaccaccactgcccagcttcagctgtttcttttagtg 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 538 caagtgctgggattaaaggcgtgcaccaccactgcccggcttcagctgtttcttttagtg 479
Query: 129 tgtggagctttttaatttcatgaagtcctccccatcaatggttggtgccttttcctgagc 188
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 478 tgtggagccttttaatttcatgaagtcctccccattaatggttggtgccttttcctgagc 419
Query: 189 tattctttgcagacagtggatgctcacacatgggccctgcagtgccttcctctacttttc 248
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 tattctttgcagacagtggatgctcacacctgggccctgcagtgccttcctctacttttc 359
Query: 249 ttcaaacagttcagagtctcaggccttacactgagatttgtctcagttatttttccattg 308
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttctaacagttcagagtctcaggccttacactgagatttgtctcagttatttttccattg 299
Query: 309 ttatgacaaacaccatggccaagtcaacttataaaagaaagcatgtaacttgggggctca 368
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 298 ttatgacaaacaccatggccaagtcaacttataaaagaaaccatgtaacttgggggctca 239
Query: 369 aattcccagagggcaagtccatgactatcatgccagggagcacggcagcaggtaggcaag 428
|||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 238 aattccca-------------tgactatcatgccagggagcatggcagcaggtaggcaag 192
Query: 429 catggtgtgctgaagcagtagctgaaagcttacatctcatctacaaacatgaaagagaac 488
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 catggtgtgctgaaacagtagctgaaagcttacatctcatctacaaacatgaaagagaac 132
Query: 489 tgggaatgaatgacacgagcttctaaaaccccgaatcccatccctggtaaacactccctc 548
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 131 tgggaatgaatgacacgagcttctgaaaccccgaatcccatccctggtaaacactccctc 72
Query: 549 taaggctctatccccgaacacctcctagtcattccccaacattccactgggaaccaagga 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 caaggctctatccccgaacacctcctagtcattccccaacattccactgggaaccaaggg 12
Query: 609 gtcaaactcaa 619
|||||||||||
Sbjct: 11 gtcaaactcaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_m13.g1 MSMg01no546_m13.g1 CHROMAT_FILE:
MSMg01no546_m13.g1 PHD_FILE: MSMg01no546_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:11 2005
(619 letters)
>mm_chr5_7874563_7875581
Length = 1019
Score = 1174 bits (607), Expect = 0.0
Identities = 616/619 (99%)
Strand = Plus / Plus
Query: 1 attcttctccttccactgtctgggtcacaagatatagaatctaaattgtcaaatctagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttctccttccactgtctgggtcacaagatatagaatctaaattgtcaaatctagaa 260
Query: 61 gcatgtgctcttactgattgagccatctcactgtctcagacagttagcacctgaactggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgtgctcttactgattgagccatctcactgtctcagacagttagcacctgaactggt 320
Query: 121 agccttaataaaatagatgccctacccaatgtgggtagatcaagtagaataagaaggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccttaataaaatagatgccctacccaatgtgggtagatcaagtagaataagaaggtaa 380
Query: 181 ctgtacccggactgacttccatacagctggagttaggacacaagcctcctaccctctgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtacccggactgacttccatacagctggagttaggacacaagcctcctaccctctgca 440
Query: 241 ttcctagttctcaggctgagttctgggagcagaatctagaccagattctttggcccttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctagttctcaggctgagttctgggagcagaatctagaccagattctttggcccttgc 500
Query: 301 gtattggcttacattgttacctttcctgggtcttgtgtgtatgtgagattcctcaacttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtattggcttacattgttacctttcctgggtcttgtgtgtatgtgagattcctcaacttc 560
Query: 361 ttttgtttttcttttatttacatttcagatgttatcccctttcctagtttcccctccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgtttttcttttatttacatttcagatgttatcccctttcctagtttcccctccaaa 620
Query: 421 aattgcttatcccttccctcgtccccctgctcaccaacccacccacttctgcttcctggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 aattgcttatcccttccctcgtccccctgctcaccaacccacccacttctgcttcctagc 680
Query: 481 cctggcattcccctatactggggaatagaaccttgacagaaccaaggtcctcttctcgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctggcattcccctatactggggaatagaaccttgacagaaccaaggtcctcttctcgaa 740
Query: 541 ttgatgaccaactaggccatcctcagttacatatgcatctggagccacaagttccaccat 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgatgaccaactaggccatcctcagttacatatgcatctggagccacaagttccaccac 800
Query: 601 gggttttctttggttggtg 619
| |||||||||||||||||
Sbjct: 801 gtgttttctttggttggtg 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
