Query= MSMg01no546_o08.b1 MSMg01no546_o08.b1 CHROMAT_FILE:
MSMg01no546_o08.b1 PHD_FILE: MSMg01no546_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(547 letters)
>mm_chr5_125473407_125474353
Length = 947
Score = 982 bits (508), Expect = 0.0
Identities = 539/558 (96%), Gaps = 15/558 (2%)
Strand = Plus / Plus
Query: 5 gaattcagcatgtctgtctccatttcctcctcctccgcctcttccctcttcctccccctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaattcagcatgtctgtctccatttcctcctcctccgcctcttccctcttcctccccctc 249
Query: 65 ctcctcctcccatttcttttctttcccctcccctcccctttccctccttcctcctcctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctcctcctcccatttcttttctttcccctcccctcccctttccctccttcctcctcctcc 309
Query: 125 ccaatcccaccccccacctctttttttttttttttttt------------gagacatggt 172
|||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 310 ccaatcccactccccacctcttttttttttttttttttttttttttttttgagacatggt 369
Query: 173 cctgtagcccaggcttggtctcagatttactatgtagcccaggatgacctcctctgcttc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctgtagcccaggcttggtctcagatttactatgtagcccaggatgacctcctctgcttc 429
Query: 233 tccaacgctgggataac---attcacagcttccagccaggcttttctatctttattttct 289
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tccaaccctgggataactacattcacagcttccagccaggcttttctatctttattttct 489
Query: 290 aaccttctctgctcttggttttctcttccatttggattttgagcaagaccttcctaccca 349
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaccttctctgctcttgtttttctcttccatttggattttgagcaagaccttcctaccca 549
Query: 350 ctgcaatattttttttcccctcacgaatgtcaccaaactaaggaagccagaaaaacagca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctgcaatattttttttcccctcacgaatgtcaccaaactaaggaagccagaaaaacagca 609
Query: 410 cggagtcctagggaggaaggccaggaggcggggtaaacggcagccagggaaccttctaga 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 610 cggagtcctagggaggaaggccaggaggcggggtaaacggcagccagggaaccttccaga 669
Query: 470 agaaaacagtatccactctggctgaattcctccagggtcaagctgcgggtttacctccca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agaaaacagtatccactctggctgaattcctccagggtcaagctgcgggtttacctccca 729
Query: 530 aagagggtgtccctctgg 547
||||||||||||||||||
Sbjct: 730 aagagggtgtccctctgg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o08.g1 MSMg01no546_o08.g1 CHROMAT_FILE:
MSMg01no546_o08.g1 PHD_FILE: MSMg01no546_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(531 letters)
>mm_chr5_125626541_125627471
Length = 931
Score = 878 bits (454), Expect = 0.0
Identities = 465/470 (98%), Gaps = 4/470 (0%)
Strand = Plus / Minus
Query: 66 gtcccagactcaggaagccaggcagtgagcttaggcccggggttggggttgagcacactg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gtcccagactcaggaagccaggcagtgagcttaggcccggggttggggttgagcacactg 872
Query: 126 ccagacgctccgagcaaaggtagctggacagcagcatttacgtgatgtgtctgaagtcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ccagacgctccgagcaaaggtagctggacagcagcatttacgtgatgtgtctgaagtcag 812
Query: 186 aaaactgcagccatgtgggccagagccttcttgttggggtaagctgt---ctcttcttcc 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 811 aaaactgcagccatgtgggccagagccttcttgttggggtaagctgtctcctcttcttcc 752
Query: 243 tcttcctcctcctcctcc-tttttaaaaaaaaaatatgacctgtgacttttatctcagag 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tcttcctcctcctcctccttttttaaaaaaaaaatatgacctgtgacttttatctcagag 692
Query: 302 tatctttttttctccccttgtgatctgggcaaatgtctcatggaatgttccagaaagttc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tatctttttttctccccttgtgatctgggcaaatgtctcatggaatgttccagaaagttc 632
Query: 362 caagtctggagaagacacgtctggcacctctgcagatgctgtttgagaaagtcagggccc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 caagtctggagaagacacgtctggcacctctgcagatgctgtttgagaaagtcagggccc 572
Query: 422 agggttacatacagtctctgcttctgaatgatcgtgcaggtgcatcagggcctggggaaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agggttacatacagtctctgcttctgaatgatcgtgcaggtgcatcagggcctggggaaa 512
Query: 482 caccaaaggacagcgactccagtggctagtgactccactttgccgttttg 531
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 511 caccaaaggacagcgactccagtggctagtgactccactttgccattttg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
