Query= MSMg01no546_p03.b1 MSMg01no546_p03.b1 CHROMAT_FILE:
MSMg01no546_p03.b1 PHD_FILE: MSMg01no546_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:25 2005
(673 letters)
>mm_chr5_71297165_71298237
Length = 1073
Score = 1187 bits (614), Expect = 0.0
Identities = 656/672 (97%), Gaps = 5/672 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaatggagtccataagatgaaaacaattttctgggttgaataccagttttatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatggagtccataagatgaaaacaattttctgggttgaataccagttttatc 264
Query: 65 ttgtataatttgggataatattggaaaaattaagaagcaaattatatgctctgcaccaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtataatttgggataatattggaaaaattaagaagcaaattatatgctctgcaccaat 324
Query: 125 attgtcccaacacatcttgtaggcagaacttgtaggtcatagattctgtgtctaggtttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgtcccaacacatcttgtaggcagaacttgtaggtcatagattctgtgtctaggtttg 384
Query: 185 tgttccagccccactgggagctgagcatggttatagaagaaagatggtgcagagtccata 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 tgttccagccccactgggagctgagcatggttatagaagacagatggtgcagagtccata 444
Query: 245 gctcttgttactaggactcctcactagagtcaatctcataggctccattatgttaggttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcttgttactaggactcctcactagagtcaatctcataggctccattatgttaggttt 504
Query: 305 ctgtaatgctcccaaaatgcttgcctatttcagctgtctcaccagtattctctccctttg 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtattgctcccaaaatgcttgcctatttcagctgtctcaccagtattctctccctttg 564
Query: 365 accctctctaccccacatgatccctcctgttttccaccccagccatctgcagtccaccta 424
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 accctctctaccccacataatccctcctgttttccactccagccatctgcagtccaccta 624
Query: 425 taccatgagggaccatggccaacactaaca----ggtcatgatatggaacttagatggct 480
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 625 taccatgagggaccatggccaacactaacacgatggtcaggatatggaacttagatggct 684
Query: 481 aagagattgtgaaagaacagaacaaaacaaaactaatttaaaaaaa-gttcaatgaaaag 539
||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |
Sbjct: 685 cagagattgtgaaagaacagaacaaaacaaaactgattaaaaaaaaagttcaatgaaatg 744
Query: 540 attgctaatgctattcttctatactcataggatagctgtctagcctaatcatcatcagag 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgctaatgcaattcttctatactcataggatagctgtctagcctaatcatcatcagag 804
Query: 600 aagcttcctccagcagctgataggagaagatacagagacccacagtcaaacattaggtag 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagcttcctccagcagctgataggagaagatacagagacccacagtcaaacattaggtac 864
Query: 660 atcttgaggaat 671
||||||||||||
Sbjct: 865 atcttgaggaat 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_p03.g1 MSMg01no546_p03.g1 CHROMAT_FILE:
MSMg01no546_p03.g1 PHD_FILE: MSMg01no546_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:25 2005
(673 letters)
>mm_chr5_71511779_71512851
Length = 1073
Score = 1162 bits (601), Expect = 0.0
Identities = 621/628 (98%)
Strand = Plus / Minus
Query: 46 acatttatgagatgtttactatatataagtcactggtttaggatgagggatacattaatg 105
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1073 acatttatgagatgtttactatatataagtcactggtttaggatgagggatccattaatg 1014
Query: 106 aacaaaacagtggctagaagaaagtgctgcattcatgttgtttagcttgaatttccttgc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 aacaaaacagtggctagaagaaagtgctgcattcatgttgtttagcttgaatttccttgc 954
Query: 166 ttagaacactgaaagtagataaataactgaggagatacataatacaatgtcaggttgtga 225
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 ttagaacacagaaagtagataaataactgaggagatacataatacaatgtcaggttgtga 894
Query: 226 tgtcatgaagaaaagcaaagtatatacagtgacagaatgtcaaattgtgtactagttatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tgtcatgaagaaaagcaaagtatatacagtgacagaatgtcaaattgtgtactagttatc 834
Query: 286 agagatagcagatgtttaaaatagaactttctaagcaaaaatcagtaaaggtgagagaga 345
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 agagatagcagatgtttgaaatagaactttctaagcaaaaatcagtaaaggtgagagaga 774
Query: 346 gaccaaggtagaatatgtaccatgtgcctggcatgtggtaaggaaaagagggttgtggtt 405
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 773 gaccaaggcagaatatgtaccatgtgcctggcatgtggtaaggaaaagagggttgtagtt 714
Query: 406 gctatagctgagaggaaacaggaattgtggtaggaaagaggcagtatagatgctgttatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gctatagctgagaggaaacaggaattgtggtaggaaagaggcagtatagatgctgttatt 654
Query: 466 gtgttatcttgcagacaatatggcttggcctaacattgtaaggccatggatgtcattgga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtgttatcttgcagacaatatggcttggcctaacattgtaaggccatggatgtcattgga 594
Query: 526 aatatacagactcataacttagtaaatgtggataactgtttaatatatatggggaaatag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aatatacagactcataacttagtaaatgtggataactgtttaatatatatggggaaatag 534
Query: 586 tacttattatggacagataaatgactcaggggatagatagaanagcagactgatacaaag 645
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 533 tacttattatggacagataaataactcaggggatagatagaaaagcagactgatacaaag 474
Query: 646 ctattattgttttccagatatgcaatgg 673
||||||||||||||||||||||||||||
Sbjct: 473 ctattattgttttccagatatgcaatgg 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
