XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAA
AAAATATTCTTAAGGGCTGTATTTTTGTATTGAAAGCCCATGAGTTTACT
TTCAATAATAATGAAAAACGCAAAAACGCTTTGTAAGCCCAATATAAAAG
TAGGCAAGCTAAGTTAACACCTATGTCTTTGCATACAATAGTACATTTGA
ACAAATACATAAAGAAGTCATGAATAAATGTTGACTGTATTTCACAAGGT
ATTTTGGAAAATGAAAACAATGAGCAATACTTTATAGATTATATGCCACA
GTACAGTAAAAATAATAGGAAGACAGCAAAGATTAAGAAATATATTTTCA
CAGTCTTGTATATTGACCATAACAAACTTGAAACAACTGAAAGTCTTTGT
TTTTAATTTTAGTTTTCAGTATCCATATTATCTTCTCTCCCTCAGATATC
TCCGATATCTCCCCTGTTCCTTCTCCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCATGTGTGTA
AATAGGTATCTGTGATGAGTATCTGTGTATTTATGTGTCTTTTTCTGTTT
CTTTCCCTCTCCTTCTCTCCCTAACTTCTTTTTTATATTCAGCCATTTTA
GTTATTTAATAGCAGCATAAAATATTTGTACTACAAATTAGAATACTTTA
GTTTTAAATACTCTGAATAATGGAACTTGAAAGAAAGGTAGAGACATGC

GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA
GTTAGGGCTATACAGAGAAACCCTGTCTCGAACCACCACCCCCCCCCCCA
AAAAAAAAGAAGAAAAGAAAACACTGACACACTAGTCAAAGAAAAAGCAC
AAAGCTCCTAACCCAAAATATCCAGGAAATCCAGGATACAATGAGAAGAC
CAAACCTAAGGATAATAGATATAGAAGGGAGTGAAGATTCCCAAAGAAAA
GGGCCAGTAAAAAAAGTTAGAGAAGAAACTATGCCGGGGCCTAGCAAACA
CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGACTCCCAA
TGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTA
TAGGTGCAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCT
AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA
GGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAG
GGCCAAAAAGGGGGAGTGGGTGGTAGGGGGAAGTGGGGGTGNTNNNTTNT
NNNNNNNNNTNNNTNTTTNNNNNTNTNTNTTTTNTNNTTTTTTTTTNTTT
TTNTNTTTTGTTTNTTNTTTTTTTTNNTTTTTNTNGTNNTTTTTTTTTTT
N

Query= MSMg01no547_l11.b1 MSMg01no547_l11.b1 CHROMAT_FILE:
MSMg01no547_l11.b1 PHD_FILE: MSMg01no547_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:25 2005
         (643 letters)



>mm_chr5_82783380_82784423
          Length = 1044

 Score =  936 bits (484), Expect = 0.0
 Identities = 580/640 (90%), Gaps = 49/640 (7%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaaaaaata-ttc-ttaagggctgtatttttgtattgaaagcccatgagttt 61
           ||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaaaaca-agttccttaagggctgtatttttgtattgaaagcccatgagttt 262

                                                                       
Query: 62  actttcaataataatgaaaaacgcaaaaacgctttgtaagcccaatataaaagtaggcaa 121
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 263 actttcaataataatgaaaaacgcaaaaatgctttgtaagcccaatataaaagtaggcaa 322

                                                                       
Query: 122 gctaagttaacacctatgtctttgcatacaatagtacatttgaacaaatacataaagaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctaagttaacacctatgtctttgcatacaatagtacatttgaacaaatacataaagaag 382

                                                                       
Query: 182 tcatgaataaatgttgactgtatttcacaaggtattttggaaaatgaaaacaatgagcaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcatgaataaatgttgactgtatttcacaaggtattttggaaaatgaaaacaatgagcaa 442

                                                                       
Query: 242 tactttatagattatatgccacagtacagtaaaaataataggaagacagcaaagattaag 301
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tactttatagattatatggcacagtacagtaaaaataataggaagacagcaaagattaag 502

                                                                       
Query: 302 aaatatattttcacagtcttgtatattgaccataacaaacttgaaacaactgaaagtctt 361
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaatatagtttcacagtcttgtatattgaccataacaaacttgaaacaactgaaagtctt 562

                                                                       
Query: 362 tgtttttaattttagttttcagtatccatattatcttctctccctcagatatctccgata 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 563 tgtttttaattttagttttcagtatccatattatcttctctccctcagatatctcc---- 618

                                                                       
Query: 422 tctcccctgttccttctccctctctctctctctctctctctctctctctctctctctccc 481
                |||||||||||||                              |||||||| |||
Sbjct: 619 -----cctgttccttctc------------------------------tctctctcgccc 643

                                                                       
Query: 482 tctctctctctctctctctctctcatgtgtgtaaataggtatctgtgatgagtatctgtg 541
           ||||||||||||||||||      ||||||||| || |||||||||||||||||||||||
Sbjct: 644 tctctctctctctctctc------atgtgtgtacatgggtatctgtgatgagtatctgtg 697

                                                                       
Query: 542 tatttatgtgtctttttctgtttctttccctctccttctctccctaacttcttttttata 601
           ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct: 698 tatttatgtatctttttctgtttctttccctctccttctctccctaccttcctttctata 757

                                                   
Query: 602 ttcagccattttagttatttaatagcagcataaaa-tatt 640
           ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 758 ttcagccattttagttatttaatagcagcataaaaatatt 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space:   654522
Effective search space used:   654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)