BAC Information

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BAC

Clone NameMSMg01-548C09
Chromosome5 (Build37)
Map Location 79,212,536 - 79,212,986
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548C09.T7 (MSMg01no548_c09.b1)MSMg01-548C09.TJ (MSMg01no548_c09.g1)
ACCAG612566AG612567
length770760
length of high quality
(start - end)
435 (46 - 480)452 (77 - 528)
definitionCHROMAT_FILE: MSMg01no548_c09.b1 PHD_FILE: MSMg01no548_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:59 2005CHROMAT_FILE: MSMg01no548_c09.g1 PHD_FILE: MSMg01no548_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCCTGTTTGATTCTCTCCATGCTGTTGCACTTCACATGCTGTG
CAAGTTCACAGGGACATCTAACCTGCTGTGACCGGAAGGCACCGGACCCT
TGAAATCATCTACCACTTCTGGTTCTTGTAAATTTTCTGTCTCTCTTTCA
CATCAATCATGGAATCGGAAGGGAAGGATTTTGATGAAGACAGCCCACGT
AGGGCTGAATCCTCTAAAGTCTCTCACAATCTTAATATTGTTAAATTGTG
GATAACAATCTATTGTTTGTTGATAAAATTCTCTGATTAGTGTTGAGTGA
TGATCTGATCCATGGATACAGCAACATGTCATTAGGGAAATGTTTATTTC
CTTTGTACCTAATCTCTGTGATGATTAGAATGAAATGCATATTCTACTTT
TAAAAATATCTAACATATACATAGTAGAGAAAATATAAAATTAAATTTTT
AATTAATTTTAAATTATTAAATTTTAAATTTAATAAGCAATAGCACATGC
TTTATTTTACAAATTGTTTTATCCTTACAAAAAAAGTCATACCTTGGAAT
TAAATTGAATACCCAACTCTAATTTCTAACTTTTATGGCCATTTGGCCTA
CCCCCTTTTCTTTGGCCAAGGTTTCAATTTTTTTCCCCCCAAAACCATTA
GAAAACCTTTACACCTTTTTCTGAAATATTTAATTCCCCACTTTTTGGGT
ATTCCCTCAAAAAATTTTTN
CTCGAATGCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCTAGGAAGCAGGAGTGGGT
TGGGAAGCATGGGGAGGGGTATGGGATAGAGGATTTTTGAATAAGAAACT
AGGAAAGAAGATAACAATTGAAATGTAAATAAAGAAAATATGTGATAAAA
ATAATTTTAAACAAATATTCAATTCATAGTTATATAAACTAATAATTATA
ACTGATGTGTATGACACACATCTGATGGTAACCACTGTGAAGTGTGACTA
AGGGGATAGGGATGTGTTCTAATATGCCTGTCCAACCAGCCCTCAGGGAG
TTGATGTTGCTCTGTAAACCCTGATCTGAGTACTGACCAGAACCGACTGA
ATATTTAACTTTGATCTTAGCCATTATAATTACTTTGTGCTGCAATATAT
TTCAGCTTCTTTTCTCTCTCAAACTTTATTTTATTCAGTATATTTTGATC
ATACTCTTTTTTCCTTCTGCAACTCTTTCCAGACCCCTTGCCATCTCCCC
AACCATTCAACTTCATGTTCTTTTTTTCTTTAAAAAAGAAACCCCCTTAA
ACCCCTTACTTCCTTACACACACATACCTTACTTACCCACACACACTCTT
TATTCTTTTCACACATATATTTTAAAAATCTAATCACTAATCAAAATTCC
TAATTAATCTATAAACCGACCCCTTTCCTTCTTTTAAAAAAAATAATGGA
AATTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_c09.g1 MSMg01no548_c09.g1 CHROMAT_FILE:
MSMg01no548_c09.g1 PHD_FILE: MSMg01no548_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:59 2005
         (452 letters)



>mm_chr5_79212336_79213186
          Length = 851

 Score =  843 bits (436), Expect = 0.0
 Identities = 448/452 (99%), Gaps = 1/452 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggctaggaagcaggagtgggttgggaagcatggggaggggtatgggatagaggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggctaggaagcaggagtgggttgggaagcatggggaggggtatgggatagaggattt 260

                                                                       
Query: 61  ttgaataagaaactaggaaagaagataacaattgaaatgtaaataaagaaaatatgtgat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgaataagaaactaggaaagaagataacaattgaaatgtaaataaagaaaatatgtgat 320

                                                                       
Query: 121 aaaaataattttaaacaaatattcaattcatagttatataaactaataattataactgat 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 aaaaataattttaaacaaatattcaattcatagttatataaactactaattataactgat 380

                                                                       
Query: 181 gtgtatgacacacatctgatggtaaccactgtgaagtgtgactaaggggatagggatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtatgacacacatctgatggtaaccactgtgaagtgtgactaaggggatagggatgtg 440

                                                                       
Query: 241 ttctaatatgcctgtccaaccagccctcagggagttgatgttgctctgtaaaccctgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaatatgcctgtccaaccagccctcagggagttgatgttgctctgtaaaccctgatc 500

                                                                       
Query: 301 tgagtactgaccagaaccgactgaatatttaactttgatcttagccattataattacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtactgaccagaaccgactgaatatttaactttgatcttagccattataattacttt 560

                                                                       
Query: 361 gtgctgcaatatatttcagcttcttttctctctcaaactttattttattcagtatatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctgcaatatatttcagcttcttttctctctcaaactttattttattcagtatatttt 620

                                           
Query: 421 gatcatactcttttttccttctgcaactcttt 452
           ||||||||||||||  ||||||||||||||||
Sbjct: 621 gatcatactcttttc-ccttctgcaactcttt 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 851
Length adjustment: 10
Effective length of query: 442
Effective length of database: 841
Effective search space:   371722
Effective search space used:   371722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)