Query= MSMg01no548_f02.b1 MSMg01no548_f02.b1 CHROMAT_FILE:
MSMg01no548_f02.b1 PHD_FILE: MSMg01no548_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:12 2005
(583 letters)
>mm_chr5_124769044_124770026
Length = 983
Score = 1073 bits (555), Expect = 0.0
Identities = 576/589 (97%), Gaps = 10/589 (1%)
Strand = Plus / Minus
Query: 5 gaattcagtagcagccataccccaaatgtaatctctataaggattatgcatttaaaatgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaattcagtagcagccataccccaaatgtaatctctataaggattatgcatttaaaatgg 780
Query: 65 actgttgcaatatactaaaagaatgagctcttcagattgtttttgtaggggaaggggtgg 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 actgttgctatatactaaaagaatgagctcttcagattgtttttgtaggggaaggggtgg 720
Query: 125 tggtggtttgaagcaggtctcaccctgggaccctgaatggtctcagagtgctgggactcc 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 719 tggtggtttgaagcaggtctcaccctgggaccctgaatggtctcagaatgctgggactcc 660
Query: 185 ttctggagcccagcctgaccttcttcagttcatggcacttagcctcccaagtgctgagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttctggagcccagcctgaccttcttcagttcatggcacttagcctcccaagtgctgagat 600
Query: 245 ttcagatttgagcttctgtaattggcagctttttggttttctcacacacgttttgtttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttcagatttgagcttctgtaattggcagctttttggttttctcacacacgttttgtttat 540
Query: 305 ccacccaacaaccactgagctaatggggaagacctctaagatgcccttgtgctatgatgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccacccaacaaccactgagctaatggggaagacctctaagatgcccttgtgctatgatgc 480
Query: 365 tgttaagacacaagatggcct----------ggtagctcagtggcgtggggcatgcttag 414
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 479 tgttaagacacaagatggcctggtttggggaggtagctcagtggcgtggggcatgcttag 420
Query: 415 catgcaggaggcccggggttctaattcagcatctggaaaagcaagttccattcattagct 474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 catacaggaggcccggggttctaattcagcatctggaaaagcaagttccattcattagct 360
Query: 475 tgtgaaacacagaaataagaacaagagcgactagcacggcatggcttgtttctggcgctt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtgaaacacagaaataagaacaagagcgactagcacggcatggcttgtttctggcgctt 300
Query: 535 gtgtttgactagaaattattactttaagactttgaatcaacacctgaag 583
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtgtttgactagaaattattactttaagactttgaatcaacacctgaag 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_f02.g1 MSMg01no548_f02.g1 CHROMAT_FILE:
MSMg01no548_f02.g1 PHD_FILE: MSMg01no548_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:12 2005
(552 letters)
>mm_chr5_124598893_124599842
Length = 950
Score = 1056 bits (546), Expect = 0.0
Identities = 550/552 (99%), Gaps = 2/552 (0%)
Strand = Plus / Plus
Query: 1 tgggtacagaaattatgtcctggccacatgagatgattagagtctccagagatagaaatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tgggtacagaaattatgtcctggccacatgagatgattagagtctccaga--tagaaatc 258
Query: 61 tggctgtgagtgggtgtctgagaacataagtgcccacgttccatccctcacatttggact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tggctgtgagtgggtgtctgagaacataagtgcccacgttccatccctcacatttggact 318
Query: 121 gcctgagctggcctcttgctgaaccacttgttctgcccttaggcctattggccacagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcctgagctggcctcttgctgaaccacttgttctgcccttaggcctattggccacagctc 378
Query: 181 actccactctcaacaaggaccatctaggagaaggggcggggcagagtcggcctcctcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 actccactctcaacaaggaccatctaggagaaggggcggggcagagtcggcctcctcagg 438
Query: 241 cgcctccctccctgttctggatgaatgggacttcctgtcttcccccactatcccctgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgcctccctccctgttctggatgaatgggacttcctgtcttcccccactatcccctgcac 498
Query: 301 tctggtcgagcaaaggctccttcatatctgatactgatagtgggttcctcctgaccccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctggtcgagcaaaggctccttcatatctgatactgatagtgggttcctcctgaccccat 558
Query: 361 cagaagcccaaagctttctaggagcagacagaccccctgggaggtggggtgctaagttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagaagcccaaagctttctaggagcagacagaccccctgggaggtggggtgctaagttcc 618
Query: 421 aaatttggctcaaatttcccatctataaacaggaaagtttcttttgtgagtccttccagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaatttggctcaaatttcccatctataaacaggaaagtttcttttgtgagtccttccagg 678
Query: 481 gcactgccatttaagaaactagcttatgtaagaaattgaggggtcaagcatggtggtgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcactgccatttaagaaactagcttatgtaagaaattgaggggtcaagcatggtggtgca 738
Query: 541 tgtctttcatcc 552
||||||||||||
Sbjct: 739 tgtctttcatcc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 950
Length adjustment: 10
Effective length of query: 542
Effective length of database: 940
Effective search space: 509480
Effective search space used: 509480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
