BAC Information

Click to search

BAC

Clone NameMSMg01-548M23
Chromosome5 (Build37)
Map Location 33,572,000 - 33,613,710
singlet/doubletdoublet
Overlap geneCtbp1
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2
Downstream geneMaea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548M23.T7 (MSMg01no548_m23.b1)MSMg01-548M23.TJ (MSMg01no548_m23.g1)
ACCAG613068AG613069
length718702
length of high quality
(start - end)		594 (49 - 642)436 (80 - 515)
definitionCHROMAT_FILE: MSMg01no548_m23.b1 PHD_FILE: MSMg01no548_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:50 2005CHROMAT_FILE: MSMg01no548_m23.g1 PHD_FILE: MSMg01no548_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,572,000 - 33,572,588)(33,613,275 - 33,613,710)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAAAAGATGTCTGTTTGACTTTCTTTTTATTGAGACAGGGT
CTCACCATGTAGCTTTTGCTGGCCTGGAGCTCACAGAGAGATCATCTACC
TACCTTTACTCTCAGATACTGGGATTAAAGGTGCGTGCTGCCATACCTGG
GAAAGGATGTTTGAAAGGGTGCAAACAATACCGTTTACTCCTAAGGATTC
AGAGAAAGAGCTGCACACCCTCCAGTACCACCTAACAGAGAATGTGTAGC
GTGGTACCCGAGCAGCGCTGGCTCCTCTGCTGGCTGCCCAGCTTCTGCAG
AGCCTGGTGGAGGCTGTCAACTGCGTACACTGTTTGCCAGGCTCATGGGG
CAGCTATGGAAAGGGTGAACTTCCCTTTGCCTGCACTCTGGCTGCCATTC
CAACCCTGACCCCTAAGGAATCACAGCCACTGGAGGCTTTCTCTCAGCTC
CACCCACCTCCTTCCCTAGGGTTTTTGTTTGTTTTGTTGTTGTTGTTATT
GTTGTTGTTGTTGTTGTTTTCTTCTGTGAACCATTAAGTATACCCATCAA
GGTATTCAGCACATGTTGGGAAAGGGGCAGTTTCATTCTGGTTTATTTTA
TTTTGTTTTGTTTTGTTTCTAAGCCATTCCTCAAAGCACTTTCTCAGAGA
TCAGAGAGATGAAAAGAT

NNNTTACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAGAGGGCCTTTAAGG
AGGATGGGAGTGGCTGAAGGAGGGATTGATCTTGGTTGAAAAGTGCTGGC
CGTTCCCAGAAGGAAGTTTTTGGTTGGTTGGTTGGTTGATTGGTTGGTTG
CTTGAGACAGGTTCCCAGAGCCCCCACAGCCCAGATAGCTGTTGTTTTTG
ATATTGCAGATGACAGTGCCCCATGCAAGGAACAAATATTCCTTGCCACG
AGTCTTGTCAGAGCTTCCAGCATCCTGACTTTAGGTCTGTTCTTCTGCAC
TGGCTCTTTAGTGCCCTCTGCTGGGAACGTTCGGCATGGCACCTACTAAG
AGGAGGGTTGGGCCTGTGGCAGGTGCCTGGCACGGGCAGGCTGTGACTCT
AGGGCGTTGTTGCTGCTTTACTGACTGGCTGTCCATTGTCTGTAGTGTTC
ATCAAGGCTGGGCATATCTTGGAAGCTAGCACTGGGTATGTGTGCTGGGA
GTTCACAGAGACAGCTTGTGAGAAAATTTGTGAGTATCTGGAAAGAAATA
TTCCCCAATACTTTGGGTGCTGGGTCCTTGGCACCACCTAACTTGAATGG
TGGCCATTGGTGGCCTTCTGGATGAATTTCCAAAACTTTACTTGGCCAGG
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_m23.b1 MSMg01no548_m23.b1 CHROMAT_FILE:
MSMg01no548_m23.b1 PHD_FILE: MSMg01no548_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:50 2005
         (594 letters)



>mm_chr5_33571797_33572790
          Length = 994

 Score = 1093 bits (565), Expect = 0.0
 Identities = 583/589 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaaaagatgtctgtttgactttctttttattgagacagggtctcaccatgta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaaagatgtctgtttgactttctttttattgagacagggtctcaccatgta 263

                                                                       
Query: 64  gcttttgctggcctggagctcacagagagatcatctacctacctttactctcagatactg 123
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctttcactggcctggagctcacagagagatcatctacctacctttactctcagatactg 323

                                                                       
Query: 124 ggattaaaggtgcgtgctgccatacctgggaaaggatgtttgaaagggtgcaaacaatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggattaaaggtgcgtgctgccatacctgggaaaggatgtttgaaagggtgcaaacaatac 383

                                                                       
Query: 184 cgtttactcctaaggattcagagaaagagctgcacaccctccagtaccacctaacagaga 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgtttactcctaaggattcagataaagagctgcacaccctccagtaccacctaacagaga 443

                                                                       
Query: 244 atgtgtagcgtggtacccgagcagcgctggctcctctgctggctgcccagcttctgcaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtgtagcgtggtacccgagcagcgctggctcctctgctggctgcccagcttctgcaga 503

                                                                       
Query: 304 gcctggtggaggctgtcaactgcgtacactgtttgccaggctcatggggcagctatggaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcctggtggaggctgtcaactgcgtacactgtttgccaggctcatggggcagctatggaa 563

                                                                       
Query: 364 agggtgaacttccctttgcctgcactctggctgccattccaaccctgacccctaaggaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agggtgaacttccctttgcctgcactctggctgccattccaaccctgacccctaaggaat 623

                                                                       
Query: 424 cacagccactggaggctttctctcagctccacccacctccttccctagggtttttgtttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacagccactggaggctttctctcagctccacccacctccttccctagggtttttgtttg 683

                                                                       
Query: 484 ttttgttgttgttgttattgttgttgttgttgttgttttcttctgtgaaccattaagtat 543
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttgttgttgttgttgttattgttgttgttgttgttttcttctgtgaaccattaagtat 743

                                                            
Query: 544 acccatcaaggtattcagcacatgttgggaaaggggcagtttcattctg 592
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acccatcagggtattcagcacatgttgggaaaggggcagtttcattctg 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_m23.g1 MSMg01no548_m23.g1 CHROMAT_FILE:
MSMg01no548_m23.g1 PHD_FILE: MSMg01no548_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:50 2005
         (436 letters)



>mm_chr5_33612950_33613785
          Length = 836

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcccagagggcctttaaggaggatgggagtggctgaaggagggattgatcttggttga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 761 tttcccagagggcctttaaggaggatgggagtggctgaaggagagattgatcttggttga 702

                                                                       
Query: 61  aaagtgctggccgttcccagaaggaagtttttggttggttggttggttgattggttggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaagtgctggccgttcccagaaggaagtttttggttggttggttggttgattggttggtt 642

                                                                       
Query: 121 gcttgagacaggttcccagagcccccacagcccagatagctgttgtttttgatattgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gcttgagacaggttcccagagcccccacagcccagatagctgttgtttttgatattgcag 582

                                                                       
Query: 181 atgacagtgccccatgcaaggaacaaatattccttgccacgagtcttgtcagagcttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atgacagtgccccatgcaaggaacaaatattccttgccacgagtcttgtcagagcttcca 522

                                                                       
Query: 241 gcatcctgactttaggtctgttcttctgcactggctctttagtgccctctgctgggaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gcatcctgactttaggtctgttcttctgcactggctctttagtgccctctgctgggaacg 462

                                                                       
Query: 301 ttcggcatggcacctactaagaggagggttgggcctgtggcaggtgcctggcacgggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttcggcatggcacctactaagaggagggttgggcctgtggcaggtgcctggcacgggcag 402

                                                                       
Query: 361 gctgtgactctagggcgttgttgctgctttactgactggctgtccattgtctgtagtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gctgtgactctagggcgttgttgctgctttactgactggctgtccattgtctgtagtgtt 342

                           
Query: 421 catcaaggctgggcat 436
           ||||||||||||||||
Sbjct: 341 catcaaggctgggcat 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |