BAC Information

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BAC

Clone NameB6Ng01-002C24
Chromosome6 (Build37)9 (Build37)
Map Location 88,061,515 - 88,061,86248,393,540 - 48,394,642
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002C24.bB6Ng01-002C24.g
ACCDH840287DH840288
length9381,095
definitionDH840287|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C24, 5' end.DH840288|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,061,515 - 88,061,862)(48,393,540 - 48,394,642)
sequence
gaattcctgggttccatgcccacccaacactgcatacacggggcatgggg
gggtatatgcctgtatggaagcagatggaccaggagttcaaagtcatttt
cagctatatattgaatttgagggcagcctgggggcatatgagcccaccac
caccaccacacacacacacacacacacacacatatacacacatggggggg
ggcagggacagcctaggagaggggttccaagggaatattgaaaataatac
tgaccagtacggtgatgcacagctttatcccacccagcacttggaaggca
aaggcagatagatctctccgagttcaaggccagcctggtctacatagcaa
gctccaggaaaccttgactcagacacacacacacacacacacacacacac
acacacacacacacacacacacactcacacagagagagagacagagacag
agagacagaggagagagacagagacagacagacagacagacagacagaca
caggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaaaagaaaaagaaaataagactataaagccacaggagccgggc
aggggtggcgcacgcctttaatcccagcactcaggaggcagaggcaggcg
gatttctgagttcaaggccagcctggtctacagagtgagttccaggatag
acagggctatacagagaaaccctgtctcaaaaaaaccaaaaaaaaaaaaa
aaaaaaaaaaagccacaggaagtatcaaaaagtatcagggccaagtgagg
tggcaggtgttccccagagagttacagaaacagacaagcaatctggagga
aaaccaacagagactgggggggagaaaaaaacgccgcctgatgactttga
caaacctgcctcacaaaaccatttttacaaaataaaaa
gaattctcttcccaaaagcatggtttttaatgaataaaaccacagaacgt
tggaccttgtgggtacataattcaacccttcattctgtgccgtggaaaac
agggctttcagaggtgaagtcctctggcttgaccccagtctcagcttgtc
atcaattaaacaagaggttttagcttttcattttccaagtcttgactcac
attagaaagatgaagtcaatatattgatttggcaagggtaaaggtcatag
tcaactgcagaactttgccgcacttagaaagttggagaaggtgggacaag
tgaagggggacagagactcctcgttgatcagtaaggagcgatcagccaac
agcttgttctaggaccatctgccttgcttcctgtgctattctgcctgcat
acctgctcctcaagagtataaagtcacctggctaaaaccaacctacctgt
ttattaaagatccaaaggccttttttctctgaaaaggaagagatggtatc
taaacaggaaagaaactattttctggttttcaacacttaagtcagaacaa
aggtaatatattaactcaatggtctgtggaaggttcgcaattcagcccca
gtcttcccatttatttatcagacaccattaaaattaaaattagaatctgg
accctagtcttttagtcagcaaccaaagccaccaaaatacttttttttta
aatattaaaagatttgcaaaagcacaaaaacttcttgtccctttgttaaa
taaacaggaaataggagatgatggtaagttaaccacattatctaatattc
aacagttctcacactaaactggcctggagcctctgtatagggtgactaaa
atttgcattttgtgtataaacccaaaaggaaaaaaatttatatttgtaaa
agtaatcacatattttttttgttaagaaggaaaaatgtgctgagatctct
tccccttttcctagcaacctcatgagtgtcaaaggaatagtttcttgttt
tggagtttaatttctattaaattcttttggagtacatgtctcagctggaa
agctttagttagagcgtgtgcgtcccttctgctggttcattagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88061515_88061862
seq2: B6Ng01-002C24.b_638_982 (reverse)

seq1  TTTTTATTTTGTAAAAAGAAAAAAAAATGTAGCCTTTGTTACGTTGGAAT  50
      |||||||||||||||||              |  ||||| | |  ||  |
seq2  TTTTTATTTTGTAAAAA-------------TGGTTTTGTGAGGCAGGTTT  37

seq1  ACTCAGAGCAAATGCAGCAAATGCAGGCAGTTCATCATTCACCCGTGACG  100
              ||||  || ||   |  |||  ||  |  | | |||  | | 
seq2  ------GTCAAAGTCATCA---GGCGGCGTTTTTTTCTCCCCCCCAGTCT  78

seq1  CGTGTGACCAGGT-------AAGAACACCTCTCTGGCT-------TCCCT  136
      | |||     |||        |||   | | ||||  |       || ||
seq2  C-TGT----TGGTTTTCCTCCAGATTGCTTGTCTGTTTCTGTAACTCTCT  123

seq1  CTTGTCCACCTCCCAGTCCCC--GGCGGAGGGACCCCT------TCCCTC  178
         |  ||||| |||   | |  |||   |  ||   |      | ||| 
seq2  GGGGAACACCTGCCACCTCACTTGGCCCTGATACTTTTTGATACTTCCTG  173

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTGG-TCTTTCGAGACAGGGTTTC  227
      |   |||||||||||||||||||||||||| | ||| |||||||||||||
seq2  TGGCTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTGAGACAGGGTTTC  223

seq1  TCTATATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCC  277
      ||| |||||||||| || ||||||| |||||| |||||||||||||||||
seq2  TCTGTATAGCCCTGTCTATCCTGGAACTCACTCTGTAGACCAGGCTGGCC  273

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATCAAAG  327
      | |||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TTGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG  323

seq1  GCGTGCGCCACCAC-GCCCGGC  348
      |||||||||||| | |||||||
seq2  GCGTGCGCCACCCCTGCCCGGC  345

seq1: chr9_48393540_48394642
seq2: B6Ng01-002C24.g_66_1160

seq1  GAATTCTCTTCCCAAAAGCATGGTTTTTAATGAATAAAACCACAGAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCCAAAAGCATGGTTTTTAATGAATAAAACCACAGAACGT  50

seq1  TGGACCTTGTGGGTACATAATTCAACCCTTCATTCTGTGCCGTGGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTGTGGGTACATAATTCAACCCTTCATTCTGTGCCGTGGAAAAC  100

seq1  AGGGCTTTCAGAGGTGAAGTCCTCTGGCTTGACCCCAGTCTCAGCTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTCAGAGGTGAAGTCCTCTGGCTTGACCCCAGTCTCAGCTTGTC  150

seq1  ATCAATTAAACAAGAGGTTTTAGCTTTTCATTTTCCAAGTCTTGACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTAAACAAGAGGTTTTAGCTTTTCATTTTCCAAGTCTTGACTCAC  200

seq1  ATTAGAAAGATGAAGTCAATATATTGATTTGGCAAGGGTAAAGGTCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGATGAAGTCAATATATTGATTTGGCAAGGGTAAAGGTCATAG  250

seq1  TCAACTGCAGAACTTTGCCGCACTTAGAAAGTTGGAGAAGGTGGGACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCAGAACTTTGCCGCACTTAGAAAGTTGGAGAAGGTGGGACAAG  300

seq1  TGAAGGGGGACAGAGACTCCTCGTTGATCAGTAAGGAGCGATCAGCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGGACAGAGACTCCTCGTTGATCAGTAAGGAGCGATCAGCCAAC  350

seq1  AGCTTGTTCTAGGACCATCTGCCTTGCTTCCTGTGCTATTCTGCCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTCTAGGACCATCTGCCTTGCTTCCTGTGCTATTCTGCCTGCAT  400

seq1  ACCTGCTCCTCAAGAGTATAAAGTCACCTGGCTAAAACCAACCTACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCCTCAAGAGTATAAAGTCACCTGGCTAAAACCAACCTACCTGT  450

seq1  TTATTAAAGATCCAAAGGCCTTTTTTCTCTGAAAAGGAAGAGATGGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGATCCAAAGGCCTTTTTTCTCTGAAAAGGAAGAGATGGTATC  500

seq1  TAAACAGGAAAGAAACTATTTTCTGGTTTTCAACACTTAAGTCAGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGAAAGAAACTATTTTCTGGTTTTCAACACTTAAGTCAGAACAA  550

seq1  AGGTAATATATTAACTCAATGGTCTGTGGAAGGTTCGCAATTCAGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATATTAACTCAATGGTCTGTGGAAGGTTCGCAATTCAGCCCCA  600

seq1  GTCTTCCCATTTATTTATCAGACACCATTAAAATTAAAATTAGAATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCATTTATTTATCAGACACCATTAAAATTAAAATTAGAATCTGG  650

seq1  ACCCTAGTCTTTTAGTCAGCAACCAAAGCCACCAAAATACTTTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGTCTTTTAGTCAGCAACCAAAGCCACCAAAATACTTTTTTTTTA  700

seq1  AATATTAAAAGATTTGCAAAAGCACAAAAACTTCTTGTCCCTTTGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAAGATTTGCAAAAGCACAAAAACTTCTTGTCCCTTTGTTAAA  750

seq1  TAAACAGGAAATAGGAGATGATGGTAAGTTAACCACATTATCTAATATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGAAATAGGAGATGATGGTAAGTTAACCACATTATCTAATATTC  800

seq1  AACAGTTCTCACACTAAACTGGCCTGGAGCCTCTGTATAGGGTGACTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTCACACTAAACTGGCCTGGAGCCTCTGTATAGGGTGACTAAA  850

seq1  ATTTGCATTTTGTGTATAAACCCAAAAGGAAAAAAATTTATATTTGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTTGTGTATAAACCCAAAAGGAAAAAAATTTATATTTGTAAA  900

seq1  AGTAATCACATATTTTTTTTGTTA--GAGGAAAAATGTGCTGAGATCTCT  948
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  AGTAATCACATATTTTTTTTGTTAAGAAGGAAAAATGTGCTGAGATCTCT  950

seq1  TCCCCTTTTCCTAGCAACCTCATGAGTGTCCAAAGGAAATAGGTTTCTTG  998
      ||||||||||||||||||||||||||||| |||||| |||| ||||||||
seq2  TCCCCTTTTCCTAGCAACCTCATGAGTGT-CAAAGG-AATA-GTTTCTTG  997

seq1  TTTTGGAAGGTTTAATTTCTATTTAAATTCCTTTTGGAGTACATGGTCTC  1048
      |||||||  |||||||||||| ||||||| |||||||||||||| |||||
seq2  TTTTGGA--GTTTAATTTCTA-TTAAATT-CTTTTGGAGTACAT-GTCTC  1042

seq1  AGGCTTGGAAAGGCTTTAGTAAGAGCCGTGTGCG--CCCTCTGCTGGTCT  1096
      ||   |||||| |||||||| |||| ||||||||  || ||||||||| |
seq2  AG--CTGGAAA-GCTTTAGTTAGAG-CGTGTGCGTCCCTTCTGCTGGT-T  1087

seq1  CA-TAGAG  1103
      || |||||
seq2  CATTAGAG  1095