BAC Information

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BAC

Clone NameB6Ng01-003C03
Chromosome6 (Build37)
Map Location 107,928,993 - 108,093,227
singlet/doubletdoublet
Overlap geneSetmar, Sumf1, LOC100043718
Upstream genePpia-ps6_1128.1, Lrrn1
Downstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C03.bB6Ng01-003C03.g
ACCDH840939DH840940
length1,0811,095
definitionDH840939|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C03, 5' end.DH840940|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,092,144 - 108,093,227)(107,928,993 - 107,930,102)
sequence
gaattctttagaagctctacccatcctttcttttcccttctgtcaggact
ggtggttgtagtggtcaaacagcctgtgtctccaagtgagaagattgtgc
agacttggggagtttgtgcttggagcccctctccctgttggcaagatgtg
acttggcgtttgctgtcagaggcagaaatagattttccctgtcagattaa
agcatctgcatgcttggaaggggctgtgcaaggctccagaatcttggcaa
gttgtgaatgtagctatctgagcatctgctgtggcgctcagggctcgtta
gctttcacttctgcaacggcctgactttctcctaaggatttgtagaagaa
gtcccatttttcctttcagctgttgcaggctatttcctgatgtcactcta
gttctgtgaaattgtcccatttattctagtctttgtcacatggcctcatt
tgctttctgatttgatggggttgtagttcaaccattttgagaactaaccc
ccaaattcttgatgccatcatggggattgttatagctctcttatgcagca
cacatggaatcatcagtgtctgtcatcagtctcccaggtgaactccttgt
cttcactctatcggctgccttgcatcttgaatggtctttgtgcagaccaa
atctaatactgctacttttccactcagattcatgcatactccctctccct
ccccctcctcctccccctccccctcagatattatttgcacagctcagtct
gtcttagagctcactatatagcccaggctgacccagtatacgtgtctctg
aatggcttcttactgtctgcaaaataaagaaataaatatgactctgaaag
ccaaaaatggtttggtctttgctgatctcttcttcagacacaaactttca
gttcctttaaaacttttaactatgaaattgttacatgagcccagagaaat
acagaaagaaataagattattggacctctgtagctgtttttctctctttt
tatcaaagaaagagataaaagagcagagttgtttttatcagccctggtgg
ttgtcagtgtttgacacttcactgccctggt
gaattccaagaagataggttcttcatgataaaaacaagccaaggagctac
ataaaaagaacagttgtagacaggcagaaagcaggcataggccaagaaag
ggtctgtgagaacagcatgttctcaaagaccacagagtgggtacagcaga
acagcccattccccactggcacactggagcctgcagaatgatgggaggat
ctgtggctgtgaaaaagcctgacatggggtcaaggggactcaggcaatca
agagccacagcagatcatgggcatgatgtttcatccactttgtcctccct
tttcagtggcatctgctaatgtgcctgaggaaacagagcccatgtggcag
tggacggctcctgcgtataactcaggagatattttcctgcctataacttg
ggaaatattttccttctcaatttctgtgcaaaagtaccatggaaaatgag
ttgcttcctctgacagatttttttttcctttgatgcttaacaaaaccaat
attaaaagaatgttagtctactatgaaataggcattctgctgagctgtca
aaagaagttatggtccatacagtggcaggttccaccccaatgtcctcagt
gtcaccatcaccaacctagtaaaaaaaaaatacataatgctgaaaatatc
ctaatagtctcatagaataatcttaatctataaaatatctggaatctgca
aaatagagacagaattaaatatttgaactatgtccttttagtgcgtgatt
atttctagaacagacaaatcccgtgaaaagtctgccagaaattcacaagt
aatagatctgtaggaggctgtgggttcctcttcaaacacacacacacaca
cacacatacaccagctttttaaacatttgtacaacctgcccacattggta
ttatctaaaatataaaatataataatttctaaatagattcagcttttgtt
actgctgaacattcaatactgaaaataaattttaatctaaaaaagaaaaa
catgcagagagcacgcgggcctcagagcaagagcttcttgacaggtctct
tcagtcttcattcctcagcaagagcaagctgatccaagtcctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108092144_108093227
seq2: B6Ng01-003C03.b_47_1127 (reverse)

seq1  ACCAGGGCAGTGAAGTGTCAAACACTGACAACACCAAGTGCTGATAAAAA  50
      ||||||||||||||||||||||||||||||||  | || |||||||||||
seq2  ACCAGGGCAGTGAAGTGTCAAACACTGACAACCACCAGGGCTGATAAAAA  50

seq1  CAACTCTTGCTCTTTTATCCTCTTTCTTTGATTAAAAAGAGAGAAAAACA  100
      |||||| ||||||||||| |||||||||||| ||||||||||||||||||
seq2  CAACTC-TGCTCTTTTAT-CTCTTTCTTTGA-TAAAAAGAGAGAAAAACA  97

seq1  GCTACAGAGGTTCCAATTATCTTATTTCTTTCTGTATTTCTCTGGGCTCA  150
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GCTACAGAGG-TCCAATAATCTTATTTCTTTCTGTATTTCTCTGGGCTCA  146

seq1  TGTAAC-ATTTCATAGTTAAAGGTTTTAAAAGGAACTGAAAG-TTGTGTC  198
      |||||| |||||||||||||| ||||| |||||||||||||| |||||||
seq2  TGTAACAATTTCATAGTTAAAAGTTTT-AAAGGAACTGAAAGTTTGTGTC  195

seq1  TGAAGAAGAGATCAGCAAAGACCAAACCATTTTTTGGCTTTCAGAGTCAT  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAAGAAGAGATCAGCAAAGACCAAACCA-TTTTTGGCTTTCAGAGTCAT  244

seq1  ATTTATTTCTTTATTTTGCAGACAGTAAGAAGCCATTCAGAGACACGTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCTTTATTTTGCAGACAGTAAGAAGCCATTCAGAGACACGTAT  294

seq1  ACTGGGTCAGCCTGGGCTATATAGTGAGCTCTAAGACAGACTGAGCTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCAGCCTGGGCTATATAGTGAGCTCTAAGACAGACTGAGCTGTG  344

seq1  C-AATAATATCTGAGGGGGAGGGGGAGGAGGAGGGGGAGGGAGAGGGAGT  397
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATATCTGAGGGGGAGGGGGAGGAGGAGGGGGAGGGAGAGGGAGT  394

seq1  ATGCATGAATCTGAGTGGAAAAGTAGCAGTATTAGATTTGGTCTGCACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAATCTGAGTGGAAAAGTAGCAGTATTAGATTTGGTCTGCACAA  444

seq1  AGACCATTCAAGATGCAAGGCAGCCGATAGAGTGAAGACAAGGAGTTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTCAAGATGCAAGGCAGCCGATAGAGTGAAGACAAGGAGTTCAC  494

seq1  CTGGGAGACTGATGACAGACACTGATGATTCCATGTGTGCTGCATAAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGACTGATGACAGACACTGATGATTCCATGTGTGCTGCATAAGAG  544

seq1  AGCTATAACAATCCCCATGATGGCATCAAGAATTTGGGGGTTAGTTCTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAACAATCCCCATGATGGCATCAAGAATTTGGGGGTTAGTTCTCA  594

seq1  AAATGGTTGAACTACAACCCCATCAAATCAGAAAGCAAATGAGGCCATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTGAACTACAACCCCATCAAATCAGAAAGCAAATGAGGCCATGT  644

seq1  GACAAAGACTAGAATAAATGGGACAATTTCACAGAACTAGAGTGACATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGACTAGAATAAATGGGACAATTTCACAGAACTAGAGTGACATCA  694

seq1  GGAAATAGCCTGCAACAGCTGAAAGGAAAAATGGGACTTCTTCTACAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGCCTGCAACAGCTGAAAGGAAAAATGGGACTTCTTCTACAAAT  744

seq1  CCTTAGGAGAAAGTCAGGCCGTTGCAGAAGTGAAAGCTAACGAGCCCTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGAGAAAGTCAGGCCGTTGCAGAAGTGAAAGCTAACGAGCCCTGA  794

seq1  GCGCCACAGCAGATGCTCAGATAGCTACATTCACAACTTGCCAAGATTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACAGCAGATGCTCAGATAGCTACATTCACAACTTGCCAAGATTCT  844

seq1  GGAGCCTTGCACAGCCCCTTCCAAGCATGCAGATGCTTTAATCTGACAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTGCACAGCCCCTTCCAAGCATGCAGATGCTTTAATCTGACAGG  894

seq1  GAAAATCTATTTCTGCCTCTGACAGCAAACGCCAAGTCACATCTTGCCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTATTTCTGCCTCTGACAGCAAACGCCAAGTCACATCTTGCCAA  944

seq1  CAGGGAGAGGGGCTCCAAGCACAAACTCCCCAAGTCTGCACAATCTTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGGGGCTCCAAGCACAAACTCCCCAAGTCTGCACAATCTTCTC  994

seq1  ACTTGGAGACACAGGCTGTTTGACCACTACAACCACCAGTCCTGACAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGACACAGGCTGTTTGACCACTACAACCACCAGTCCTGACAGAA  1044

seq1  GGGAAAAGAAAGGATGGGTAGAGCTTCTAAAGAATTC  1084
      |||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGAAAGGATGGGTAGAGCTTCTAAAGAATTC  1081

seq1: chr6_107928993_107930102
seq2: B6Ng01-003C03.g_67_1161

seq1  GAATTCCAAGAAGATAGGTTCTTCATGATAAAAACAAGCCAAGGAGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAGATAGGTTCTTCATGATAAAAACAAGCCAAGGAGCTAC  50

seq1  ATAAAAAGAACAGTTGTAGACAGGCAGAAAGCAGGCATAGGCCAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAACAGTTGTAGACAGGCAGAAAGCAGGCATAGGCCAAGAAAG  100

seq1  GGTCTGTGAGAACAGCATGTTCTCAAAGACCACAGAGTGGGTACAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGAGAACAGCATGTTCTCAAAGACCACAGAGTGGGTACAGCAGA  150

seq1  ACAGCCCATTCCCCACTGGCACACTGGAGCCTGCAGAATGATGGGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCATTCCCCACTGGCACACTGGAGCCTGCAGAATGATGGGAGGAT  200

seq1  CTGTGGCTGTGAAAAAGCCTGACATGGGGTCAAGGGGACTCAGGCAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGTGAAAAAGCCTGACATGGGGTCAAGGGGACTCAGGCAATCA  250

seq1  AGAGCCACAGCAGATCATGGGCATGATGTTTCATCCACTTTGTCCTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACAGCAGATCATGGGCATGATGTTTCATCCACTTTGTCCTCCCT  300

seq1  TTTCAGTGGCATCTGCTAATGTGCCTGAGGAAACAGAGCCCATGTGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGGCATCTGCTAATGTGCCTGAGGAAACAGAGCCCATGTGGCAG  350

seq1  TGGACGGCTCCTGCGTATAACTCAGGAGATATTTTCCTGCCTATAACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGCTCCTGCGTATAACTCAGGAGATATTTTCCTGCCTATAACTTG  400

seq1  GGAAATATTTTCCTTCTCAATTTCTGTGCAAAAGTACCATGGAAAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTTTCCTTCTCAATTTCTGTGCAAAAGTACCATGGAAAATGAG  450

seq1  TTGCTTCCTCTGACAGATTTTTTTTTCCTTTGATGCTTAACAAAACCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTCTGACAGATTTTTTTTTCCTTTGATGCTTAACAAAACCAAT  500

seq1  ATTAAAAGAATGTTAGTCTACTATGAAATAGGCATTCTGCTGAGCTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGAATGTTAGTCTACTATGAAATAGGCATTCTGCTGAGCTGTCA  550

seq1  AAAGAAGTTATGGTCCATACAGTGGCAGGTTCCACCCCAATGTCCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTATGGTCCATACAGTGGCAGGTTCCACCCCAATGTCCTCAGT  600

seq1  GTCACCATCACCAACCTAGTAAAAAAAAAATACATAATGCTGAAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATCACCAACCTAGTAAAAAAAAAATACATAATGCTGAAAATATC  650

seq1  CTAATAGTCTCATAGAATAATCTTAATCTATAAAATATCTGGAATCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTCTCATAGAATAATCTTAATCTATAAAATATCTGGAATCTGCA  700

seq1  AAATAGAGACAGAATTAAATATTTGAACTATGTCCTTTTAGTGCGTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGACAGAATTAAATATTTGAACTATGTCCTTTTAGTGCGTGATT  750

seq1  ATTTCTAGAACAGACAAATCCCGTGAAAAGTCTGCCAGAAATTCACAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGAACAGACAAATCCCGTGAAAAGTCTGCCAGAAATTCACAAGT  800

seq1  AATAGATCTGTAGGAGGCTGTGGGTTCCTCTTCAAACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCTGTAGGAGGCTGTGGGTTCCTCTTCAAACACACACACACACA  850

seq1  CACACATACACCAGCTTTTTAAACATTTGTACAACCTGCCCACATTGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACCAGCTTTTTAAACATTTGTACAACCTGCCCACATTGGTA  900

seq1  TTATCTAAAAATATAAAATATAATAATTTCTAAATAGATTCAGCTTTTGT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCT-AAAATATAAAATATAATAATTTCTAAATAGATTCAGCTTTTGT  949

seq1  TACTGCTGAACATTCAAATACTGGAAAATAAAATTTTAATCTAAAAAAAG  1000
      ||||||||||||||| |||||| |||||| |||||||||||| |||||||
seq2  TACTGCTGAACATTC-AATACT-GAAAAT-AAATTTTAATCT-AAAAAAG  995

seq1  AAAAACATGGCAGGAGAGCACGCGGGCCTCAGAAGCAACAGAGCTTCTTG  1050
      |||||||| ||| ||||||||||||||||||| ||||  |||||||||||
seq2  AAAAACAT-GCA-GAGAGCACGCGGGCCTCAG-AGCA--AGAGCTTCTTG  1040

seq1  ACAGGGTCTCTTCAGGTCTTCA-TCCTCAGCAAGGAGGCAAAGCTGATCC  1099
      ||| |||||||||| ||||||| |||||||||| |||   ||||||||||
seq2  ACA-GGTCTCTTCA-GTCTTCATTCCTCAGCAA-GAG--CAAGCTGATCC  1085

seq1  ACAGTCCTTTG  1110
      | |||||||||
seq2  A-AGTCCTTTG  1095