BAC Information

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BAC

Clone NameB6Ng01-003N16
Chromosome6 (Build37)
Map Location 87,699,807 - 87,795,827
singlet/doubletdoublet
Overlap geneLOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp
Upstream geneAnxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550
Downstream geneCopg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N16.bB6Ng01-003N16.g
ACCDH841437DH841438
length1,0761,114
definitionDH841437|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N16, 5' end.DH841438|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,794,740 - 87,795,827)(87,699,807 - 87,700,937)
sequence
gaattctaagtgtttaatgatattttttgattttccaaagctctaactgc
agctatgagcagcaacgaatgcttcaagtgtggacgatctggccactggg
ccagggagtgccctactggtggaggtcggggtcgtggaatgagaagccgc
ggcagaggtggttttacctcggatagaggtatttttgtcgaataaaaaat
tttgaagtactccagcattcattaataccaagactggcctgattatccca
attctttttgtttctactcaaaatagggttccagtttgtttcctcgtctc
tccctgacatctgctaccgctgtggtgagtctggtcatcttgccaaggat
tgtgatctgcaggaggatggtaagtatttaacacttgatactcttgggag
aggtgagtgtgtacttacacacagctttggaagggtttgtagcatgtggt
ttaaatatactactttataaaggttttatagtcttggtctgcttcttttc
cttattgttgaagcctgctataactgcggtagaggtggccacattgccaa
ggactgcaaggagcccaagagagagcgagagcaatgctgctacaattgtg
gcaagccaggccatctggctcgtgactgtgaccacgcggatgagcagaag
tgctattcttgtggtgaatttggacatattcaaaaagactgcaccaaggt
gaagtgctataggtgagtcatgaagtggtactgaaaacgtggagattttt
gtgcaggtagtgtctgttgaacggctttgtgacttgatctcctttgtggg
gtagattcaggcttagtggcaaacagatggctttactttctgagcagtct
tgtctttccctctttgagatgagtttactatgtagccctaattggccctc
aatttgaggcagtttaccactcctagtaaagaaaccctgctcctggttct
cttttgtgtgctaaggtattggaactaggactcaacctgtaggcagaact
gccacagaaccagataaagttacgtttgaagtagtaagtctcataagtgt
gaaaagaattgtgcagtctgttatgt
gaattctgagtgtcaggtcagtcagcacaaactgctcaggaaagtatggg
ctcgcataacttgagtccatagatttggggccacccccaataactactgg
cctattcccccaaccctgagatcaatcactgtcagcagacatacctccct
ggctccagcccatatcttggcctccaagcccagagcaggaagatcagccc
ccatctgagttcattttggctatatccttcactgacttgcatggtgtccc
agctcttccagaacctccactgagactggagagagctgtctctggttgac
acagcctgacagatacccagagccggaatgcaaaagggtcagggtctctt
ggagtctctgatctgcaaatagggacaaggactttggctgggcaatagga
cagggcagctgccatcacctacgccagtcaggatggtgttcaccaaagct
cagcagttagggggaccacaggccacatattggacaccttttctcccaca
accccccaaaactgagaactgaaagtcctgagtgacatataccagcaccc
cacaaagctctatccagttccccaatctaagtcattacatgtcctgaagt
agatctgatgctgggccatgacaccagagatgcctcctcatgtgccacct
aaggagacagggactgtatctcaggggctcccgtgcagttccccaggggc
tgagccagtgtcatggtgtcaccagtgcctcacttcacacatgttcccaa
ggagggctgtttggtcctcatgccgggtcaccagtccctggatgtcatat
ttccccagcagaggatgagcagctgttccgctccgtggaaggccaggccg
cctctgaggaggaagaggaagaaagtggcaggaaagccagggcgctcaca
gcccatggtgaggtaccctggtgcaaccctcagctgtgtgagtaggtaag
tgcctggatagcccagctgccaaaagcacagagcagcacaaaagtagatc
tcttgcagagccttcacacggcttcataggggaagcaacagttctagtgc
acagccacactagccctgacagccctctggtagacatagctcaagaggtg
gtacacatcctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87794740_87795827
seq2: B6Ng01-003N16.b_48_1123 (reverse)

seq1  ACAT-ACAGACTTGCACAATTTCTTTCACACTCACTGAGACCTTACTACT  49
      |||| |||||| |||||||||  ||||||||| | ||||| |||||||||
seq2  ACATAACAGAC-TGCACAATTCTTTTCACACTTA-TGAGA-CTTACTACT  47

seq1  CCAAACTGTACACTTTATCTTGGTTCTGTGGCAGTGTCTGCCTACCAGGT  99
       ||||| ||| |||||||| ||||||||||||||| |||||||| |||| 
seq2  TCAAAC-GTA-ACTTTATC-TGGTTCTGTGGCAGT-TCTGCCTA-CAGG-  91

seq1  TTGAGGTCCTAGGTCCAATAACCTAGCACCACAAAAGGAGAACCAGGAGC  149
      |||| ||||||| ||||||| | ||||| ||||||| |||||||||||||
seq2  TTGA-GTCCTAGTTCCAATACCTTAGCA-CACAAAA-GAGAACCAGGAGC  138

seq1  AGGGTTTCTTTACTAGGAGTGGTAAACTGCCTCAAATTGAGGGGCCAATT  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGTTTCTTTACTAGGAGTGGTAAACTGCCTCAAATTGA-GGGCCAATT  187

seq1  AGGGCTACATAGTAAACTCATCTCAAAAGAGGGAAAGACAAGACTGCTCA  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGCTACATAGTAAACTCATCTC-AAAGAGGGAAAGACAAGACTGCTCA  236

seq1  GAAAGTAAAGCCATCTGTTTGCCACTAAGCCTGAATCTACCCCACAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAAGCCATCTGTTTGCCACTAAGCCTGAATCTACCCCACAAAGG  286

seq1  AGATCAAGTCAC-AAGCCGTTCAACAGACACTACCTGCACAAAAATCTCC  348
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGTCACAAAGCCGTTCAACAGACACTACCTGCACAAAAATCTCC  336

seq1  ACGTTTTCAGTACCACTTCATGACTCACCTATAGCACTTCACCTTGGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTCAGTACCACTTCATGACTCACCTATAGCACTTCACCTTGGTGC  386

seq1  AGTCTTTTTGAATATGTCCAAATTCACCACAAGAATAGCACTTCTGCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTTGAATATGTCCAAATTCACCACAAGAATAGCACTTCTGCTCA  436

seq1  TCCGCGTGGTCACAGTCACGAGCCAGATGGCCTGGCTTGCCACAATTGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCGTGGTCACAGTCACGAGCCAGATGGCCTGGCTTGCCACAATTGTA  486

seq1  GCAGCATTGCTCTCGCTCTCTCTTGGGCTCCTTGCAGTCCTTGGCAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTGCTCTCGCTCTCTCTTGGGCTCCTTGCAGTCCTTGGCAATGT  536

seq1  GGCCACCTCTACCGCAGTTATAGCAGGCTTCAACAATAAGGAAAAGAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTCTACCGCAGTTATAGCAGGCTTCAACAATAAGGAAAAGAAGC  586

seq1  AGACCAAGACTATAAAACCTTTATAAAGTAGTATATTTAAACCACATGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAGACTATAAAACCTTTATAAAGTAGTATATTTAAACCACATGCT  636

seq1  ACAAACCCTTCCAAAGCTGTGTGTAAGTACACACTCACCTCTCCCAAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCTTCCAAAGCTGTGTGTAAGTACACACTCACCTCTCCCAAGAG  686

seq1  TATCAAGTGTTAAATACTTACCATCCTCCTGCAGATCACAATCCTTGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTGTTAAATACTTACCATCCTCCTGCAGATCACAATCCTTGGCA  736

seq1  AGATGACCAGACTCACCACAGCGGTAGCAGATGTCAGGGAGAGACGAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCAGACTCACCACAGCGGTAGCAGATGTCAGGGAGAGACGAGGA  786

seq1  AACAAACTGGAACCCTATTTTGAGTAGAAACAAAAAGAATTGGGATAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTGGAACCCTATTTTGAGTAGAAACAAAAAGAATTGGGATAATC  836

seq1  AGGCCAGTCTTGGTATTAATGAATGCTGGAGTACTTCAAAATTTTTTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTCTTGGTATTAATGAATGCTGGAGTACTTCAAAATTTTTTATT  886

seq1  CGACAAAAATACCTCTATCCGAGGTAAAACCACCTCTGCCGCGGCTTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAAAATACCTCTATCCGAGGTAAAACCACCTCTGCCGCGGCTTCTC  936

seq1  ATTCCACGACCCCGACCTCCACCAGTAGGGCACTCCCTGGCCCAGTGGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACGACCCCGACCTCCACCAGTAGGGCACTCCCTGGCCCAGTGGCC  986

seq1  AGATCGTCCACACTTGAAGCATTCGTTGCTGCTCATAGCTGCAGTTAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTCCACACTTGAAGCATTCGTTGCTGCTCATAGCTGCAGTTAGAG  1036

seq1  CTTTGGAATATCAAAAAATATCATTAAACACTTAGAATTC  1088
      |||||||| |||||||||||||||||||||||||||||||
seq2  CTTTGGAAAATCAAAAAATATCATTAAACACTTAGAATTC  1076

seq1: chr6_87699807_87700937
seq2: B6Ng01-003N16.g_67_1180

seq1  GAATTCTGAGTGTCAGGTCAGTCAGCACAAACTGCTCAGGAAAGTATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGTCAGGTCAGTCAGCACAAACTGCTCAGGAAAGTATGGG  50

seq1  CTCGCATAACTTGAGTCCATAGATTTGGGGCCACCCCCAATAACTACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCATAACTTGAGTCCATAGATTTGGGGCCACCCCCAATAACTACTGG  100

seq1  CCTATTCCCCCAACCCTGAGATCAATCACTGTCAGCAGACATACCTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCCCCAACCCTGAGATCAATCACTGTCAGCAGACATACCTCCCT  150

seq1  GGCTCCAGCCCATATCTTGGCCTCCAAGCCCAGAGCAGGAAGATCAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGCCCATATCTTGGCCTCCAAGCCCAGAGCAGGAAGATCAGCCC  200

seq1  CCATCTGAGTTCATTTTGGCTATATCCTTCACTGACTTGCATGGTGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGAGTTCATTTTGGCTATATCCTTCACTGACTTGCATGGTGTCCC  250

seq1  AGCTCTTCCAGAACCTCCACTGAGACTGGAGAGAGCTGTCTCTGGTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCCAGAACCTCCACTGAGACTGGAGAGAGCTGTCTCTGGTTGAC  300

seq1  ACAGCCTGACAGATACCCAGAGCCGGAATGCAAAAGGGTCAGGGTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGACAGATACCCAGAGCCGGAATGCAAAAGGGTCAGGGTCTCTT  350

seq1  GGAGTCTCTGATCTGCAAATAGGGACAAGGACTTTGGCTGGGCAATAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCTGATCTGCAAATAGGGACAAGGACTTTGGCTGGGCAATAGGA  400

seq1  CAGGGCAGCTGCCATCACCTACGCCAGTCAGGATGGTGTTCACCAAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCTGCCATCACCTACGCCAGTCAGGATGGTGTTCACCAAAGCT  450

seq1  CAGCAGTTAGGGGGACCACAGGCCACATATTGGACACCTTTTCTCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTAGGGGGACCACAGGCCACATATTGGACACCTTTTCTCCCACA  500

seq1  ACCCCCCAAAACTGAGAACTGAAAGTCCTGAGTGACATATACCAGCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCAAAACTGAGAACTGAAAGTCCTGAGTGACATATACCAGCACCC  550

seq1  CACAAAGCTCTATCCAGTTCCCCAATCTAAGTCATTACATGTCCTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCTCTATCCAGTTCCCCAATCTAAGTCATTACATGTCCTGAAGT  600

seq1  AGATCTGATGCTGGGCCATGACACCAGAGATGCCTCCTCATGTGCCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGATGCTGGGCCATGACACCAGAGATGCCTCCTCATGTGCCACCT  650

seq1  AAGGAGACAGGGACTGTATCTCAGGGGCTCCCGTGCAGTTCCCCAGGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAGGGACTGTATCTCAGGGGCTCCCGTGCAGTTCCCCAGGGGC  700

seq1  TGAGCCAGTGTCATGGTGTCACCAGTGCCTCACTTCACACATGTTCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGTGTCATGGTGTCACCAGTGCCTCACTTCACACATGTTCCCAA  750

seq1  GGAGGGCTGTTTGGTCCTCATGCCGGGTCACCAGTCCCTGGATGTCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTGTTTGGTCCTCATGCCGGGTCACCAGTCCCTGGATGTCATAT  800

seq1  TTCCCCAGCAGAGGATGAGCAGCTGTTCCGCTCCGTGGAAGGCCAGGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGCAGAGGATGAGCAGCTGTTCCGCTCCGTGGAAGGCCAGGCCG  850

seq1  CCTCTGAGGAGGAAGAGGAAGAAAGGTGGCAGGAAAAGCCAGGGCGCCCA  900
      |||||||||||||||||||||||| |||||||| ||||||||||||| ||
seq2  CCTCTGAGGAGGAAGAGGAAGAAA-GTGGCAGG-AAAGCCAGGGCGCTCA  898

seq1  CAGGCCCATGGTGAGGTACCCCTGGTGCAACCCTCAGGCTGTGTGAGTAG  950
      || ||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  CA-GCCCATGGTGAGGTA-CCCTGGTGCAACCCTCA-GCTGTGTGAGTAG  945

seq1  GTAAGTGCCTGGATAGCCCCAGGCTGCCAAAAAGCACAGAGCAGCACAAA  1000
      |||||||||||||||||||   |||||| |||||||||||||||||||||
seq2  GTAAGTGCCTGGATAGCCC--AGCTGCC-AAAAGCACAGAGCAGCACAAA  992

seq1  AGTAGATTCTCCTTGCAGAGCCTTCACACGGCTTCATTAGGGGAAGCCAA  1050
      |||||| ||| ||||||||||||||||||||||||| ||||||||| |||
seq2  AGTAGA-TCT-CTTGCAGAGCCTTCACACGGCTTCA-TAGGGGAAG-CAA  1038

seq1  CAGTTCTAGTGCACAGCCACACTTAGCCCCTGACAGCCCTTCCTGGTAGA  1100
      |||||||||||||||||||||| ||| |||||||||||||  ||||||||
seq2  CAGTTCTAGTGCACAGCCACAC-TAG-CCCTGACAGCCCT--CTGGTAGA  1084

seq1  CATAGCTC-AGAGGTGGGTACACATCCCTCCA  1131
      |||||||| |||||| ||||||||| ||||||
seq2  CATAGCTCAAGAGGT-GGTACACAT-CCTCCA  1114