BAC Information

Click to search

BAC

Clone NameB6Ng01-004F19
Chromosome6 (Build37)
Map Location 37,699,401 - 37,799,439
singlet/doubletdoublet
Overlap geneLOC100039636
Upstream genePtn, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
Downstream geneLOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F19.bB6Ng01-004F19.g
ACCDH841792DH841793
length472447
definitionDH841792|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F19, 5' end.DH841793|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,699,401 - 37,699,878)(37,798,987 - 37,799,439)
sequence
agatccaaggctagtccccatatgcccatcccatcagggacttaaagcca
ggacctcccaggcaaatgtcacaccactaatctgtagctccatatctttt
tgactctgttgttgttgttgttgttgttgttgttgttattattattatta
ttatttactattatcagactctcattaagtaacacaatctggccatgagc
tcactttgtagcccaggcaatccttaaaattgaaatcctacagtctctgc
tgtaccatcaggccaggccaaaacaaggctctacagcgtagggtagagtt
ctgctatgtggtcagcacttggcctgggatttaaagtagtaagcaaacct
aaatgtgtgggctcaggtctttcatcctagcactgggaaggaggaggggt
atctccacaagtttaagggttggtgaagctggtgtgtttataaaaagata
gagagagaggaggggtatgttt
tatggtctgatcttaaaacttagggattggtgggatttcccgctcaagga
ttggtgttttgttttttgggttttggatttttttttttttttttttttta
aagatttattttatttattatatgtaagtacactgtagctgtcttcagac
actccagaagagggcgccagatctcgttacggatggttgtgagccaccat
gtggttgctgggatttgaactccagaccttcggaagagcagtcgggtgct
cttacccactgagccatctcaccagctttttttttttttttaagccattg
tcttggggtcaagtcaggatcagggtgggttttttgtttgtttggttttg
tttttttgctggtttttttttttttttctgagttattttaatctacaccc
tcatgcatcctaatggaagaaattgttttgaggagtccaccatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37699401_37699878
seq2: B6Ng01-004F19.b_45_522

seq1  GAATTCAGATCCAAGGCTAGTCCCCATATGCCCATCCCATCAGGGACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCAAGGCTAGTCCCCATATGCCCATCCCATCAGGGACTTA  50

seq1  AAGCCAGGACCTCCCAGGCAAATGTCACACCACTAATCTGTAGCTCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGACCTCCCAGGCAAATGTCACACCACTAATCTGTAGCTCCATA  100

seq1  TCTTTTTGACTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGACTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTATTA  150

seq1  TTATTATTATTTACTATTATCAGACTCTCATTAAGTAACACAATCTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTTACTATTATCAGACTCTCATTAAGTAACACAATCTGGCC  200

seq1  ATGAGCTCACTTTGTAGCCCAGGCAATCCTTAAAATTGAAATCCTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCACTTTGTAGCCCAGGCAATCCTTAAAATTGAAATCCTACAGT  250

seq1  CTCTGCTGTACCATCAGGCCAGGCCAAAACAAGGCTCTACAGCGTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGTACCATCAGGCCAGGCCAAAACAAGGCTCTACAGCGTAGGGT  300

seq1  AGAGTTCTGCTATGTGGTCAGCACTTGGCCTGGGATTTAAAGTAGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTGCTATGTGGTCAGCACTTGGCCTGGGATTTAAAGTAGTAAGC  350

seq1  AAACCTAAATGTGTGGGCTCAGGTCTTTCATCCTAGCACTGGGAAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAATGTGTGGGCTCAGGTCTTTCATCCTAGCACTGGGAAGGAGG  400

seq1  AGGGGTATCTCCACAAGTTTAAGGGTTGGTGAAGCTGGTGTGTTTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTATCTCCACAAGTTTAAGGGTTGGTGAAGCTGGTGTGTTTATAAA  450

seq1  AAGATAGAGAGAGAGGAGGGGTATGTTT  478
      ||||||||||||||||||||||||||||
seq2  AAGATAGAGAGAGAGGAGGGGTATGTTT  478

seq1: chr6_37798987_37799439
seq2: B6Ng01-004F19.g_64_516 (reverse)

seq1  ATCTCTGGTGGACTCCTCATAACAATTTCTTACAATAGGATGCATGAGGG  50
      |||| |||||||||||||| ||||||||||| || |||||||||||||||
seq2  ATCTATGGTGGACTCCTCAAAACAATTTCTTCCATTAGGATGCATGAGGG  50

seq1  TGTAGATTAAAATAACTCAGAAAAAAAAAAAAAAACCAGCAAAAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTAAAATAACTCAGAAAAAAAAAAAAAAACCAGCAAAAAAACAA  100

seq1  AACCAAACAAACAAAAAACCCACCCTGATCCTGACTTGACCCCAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAAACAAAAAACCCACCCTGATCCTGACTTGACCCCAAGACAA  150

seq1  TGGCTTAAAAAAAAAAAAAAAGCTGGTGAGATGGCTCAGTGGGTAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAAAAAAAAAAAAAAGCTGGTGAGATGGCTCAGTGGGTAAGAGC  200

seq1  ACCCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATG  250

seq1  GTGGCTCACAACCATCCGTAACGAGATCTGGCGCCCTCTTCTGGAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCATCCGTAACGAGATCTGGCGCCCTCTTCTGGAGTGTC  300

seq1  TGAAGACAGCTACAGTGTACTTACATATAATAAATAAAATAAATCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTACAGTGTACTTACATATAATAAATAAAATAAATCTTTAA  350

seq1  AAAAAAAAAAAAAAAAAAAATCCAAAACCCAAAAAACAAAACACCAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAATCCAAAACCCAAAAAACAAAACACCAATCC  400

seq1  TTGAGCGGGAAATCCCACCAATCCCTAAGTTTTAAGATCAGACCATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCGGGAAATCCCACCAATCCCTAAGTTTTAAGATCAGACCATAGAA  450

seq1  TTC  453
      |||
seq2  TTC  453