BAC Information

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BAC

Clone NameB6Ng01-005D17
Chromosome6 (Build37)
Map Location 106,415,055 - 106,416,250
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D17.bB6Ng01-005D17.g
ACCDH842423DH842424
length1,1901,202
definitionDH842423|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D17, 5' end.DH842424|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggaaagtaaaatgtagcattctgtagagacagatgaagattat
tagagaattaaaaaaaatacatatgcagccattgcttgcactagaaaata
tttcttttatgtggatgaaaagagaatctaattatttttctacattagtg
gcaaaacaatacaaacctgatgttcttaactgtgtgttagtaaagatatt
tttttccaccttcgattcctagctctttatctgtcactttaaattggctg
tttgacagatgttcaataattgacacagcttatctttgcctctcaggcgt
ctttcctacacaattgccagcattttctgttaccatagcaactgtaaaca
ttaatgattattccaacatgccatggggatttaaacacattcttaaaagt
tccctcaggaaagaaaaaaaaaatctatctatctctggcaagatggaaac
tattatatgatttaaattctcaagttattatacttattatggataaatac
ataaatctacttctgtagttttgcataagtaataattttctttcccttat
gatgaaccaaatatgtttataagaagtcagaaatttgttttttccattgt
aaagtggaacaattcctatagatatatgataaataagaaaaagggagggt
atttattctgaatggaaccatgtcagcattatttcacaaaatctggaggc
aagctcaagtcccttcaatcttaaaggctcaaatgtcccaagagtatttg
tgaggacacctgtcccaatcatgcatataaacttcagctctaataagcaa
agcatagattcagttactactgggcactactttgaaagtaaatattcatg
tccatataagactgaaaatagacagagtatacagagcttttcgagagaaa
tttctagaaaaatcaccattcttctgtttcctaatgcaactatataaatt
taaagaaggaattgttaacacgaaatgtagagacctgctaggcatggtgg
tgcacaccttttatgctagcacttggcatccagcaacccagcagatcttc
tgtgaatttggtgacaggctgcttaatagtgagttctagggtacataaga
ggtcctaaccacaaaacaacagtaacgaacaaacctatgtaaatatccca
cacctcagccttcatgtaggaaggtaaccaggcagtactg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactccctgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaacatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaattgctgacaccattgcatacactagcaagattattgctgaa
aggaccctgatatagctgtctcttgtcagagtattgcctggggcctagca
aacattagaagtgggatgcctcacagtcggctattggatggattacatgg
ccccctattgaaggagcttaaagaaagtaccatagaagctaaagggatct
tgcaactcttattagtggaacaacatttatgaactaaccagtaccccgga
gcctcttgacccttacttgcatattgcattcaaagtggcctattcgtcat
tacttggtaagaagaggccatttgtacatcgctaactttatttgctcagt
catggtaaccgccatgtccaataaaggaacgtgttggctacggcggaatg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106415055_106416250
seq2: B6Ng01-005D17.b_46_1235 (reverse)

seq1  CAGTACTGCCTGGGTTACTGTCTTACATAGAAGCTGTAGGTGTGGGATAT  50
      ||||||||||| ||||||  || |||||  | |||| |||||||||||||
seq2  CAGTACTGCCT-GGTTACCTTCCTACATGAAGGCTG-AGGTGTGGGATAT  48

seq1  TTACATGAGGTTTGTTCTGTTTACTGTTG-TTTGTGG-TAGGACCTCCTT  98
      |||||| ||||||||||   ||||||||| ||||||| |||||||| |||
seq2  TTACAT-AGGTTTGTTC--GTTACTGTTGTTTTGTGGTTAGGACCT-CTT  94

seq1  ATGTACCCCTAGAACTCACTATTTAAGCAGCCTGTCACCAAACTCACAG-  147
      ||||| ||||||||||||||| |||||||||||||||||||| |||||| 
seq2  ATGTA-CCCTAGAACTCACTA-TTAAGCAGCCTGTCACCAAATTCACAGA  142

seq1  AGATCTTGCTGGGTTGCTGGGATGGCCAAGTGCTAGCATAAAAGGTGTGC  197
      ||||| |||||||||||| |||| ||||||||||||||||||||||||||
seq2  AGATC-TGCTGGGTTGCT-GGAT-GCCAAGTGCTAGCATAAAAGGTGTGC  189

seq1  ACCACCATGCCTAGCAGGTCTCTACATTTTCGTGTTAACAATTCCTTCTT  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCACCATGCCTAGCAGGTCTCTACA-TTTCGTGTTAACAATTCCTTCTT  238

seq1  TAAATTTATATAGTTGCA-TAGGAAACAGAAG-ATGGTGA-TTTTCTAGA  294
      |||||||||||||||||| ||||||||||||| ||||||| |||||||||
seq2  TAAATTTATATAGTTGCATTAGGAAACAGAAGAATGGTGATTTTTCTAGA  288

seq1  AATTTCTCTCGAAAATGCTCTGTATACTCTGTCTATTTTCAGTCTTATAT  344
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTCGAAAA-GCTCTGTATACTCTGTCTATTTTCAGTCTTATAT  337

seq1  GGACATGAATATTTACTTTCAAAGTAGTG-CCAGTAGTAACTGAATCTAT  393
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGACATGAATATTTACTTTCAAAGTAGTGCCCAGTAGTAACTGAATCTAT  387

seq1  GCTTTGCTTATTAGAGCTGAAGTTTATATGCATGATTGGGACAGGTGTCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTATTAGAGCTGAAGTTTATATGCATGATTGGGACAGGTGTCC  437

seq1  TCACAAATACTCTTGGGACATTTGAGCCTTTAAGATTGAAGGGACTTGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATACTCTTGGGACATTTGAGCCTTTAAGATTGAAGGGACTTGAG  487

seq1  CTTGCCTCCAGATTTTGTGAAATAATGCTGACATGGTTCCATTCAGAATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCCAGATTTTGTGAAATAATGCTGACATGGTTCCATTCAGAATA  537

seq1  AATACCCTCCCTTTTTCTTATTTATCATATATCTATAGGAATTGTTCCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTCCCTTTTTCTTATTTATCATATATCTATAGGAATTGTTCCAC  587

seq1  TTTACAATGGAAAAAACAAATTTCTGACTTCTTATAAACATATTTGGTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGGAAAAAACAAATTTCTGACTTCTTATAAACATATTTGGTTC  637

seq1  ATCATAAGGGAAAGAAAATTATTACTTATGCAAAACTACAGAAGTAGATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGGGAAAGAAAATTATTACTTATGCAAAACTACAGAAGTAGATT  687

seq1  TATGTATTTATCCATAATAAGTATAATAACTTGAGAATTTAAATCATATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTATCCATAATAAGTATAATAACTTGAGAATTTAAATCATATA  737

seq1  ATAGTTTCCATCTTGCCAGAGATAGATAGATTTTTTTTTTCTTTCCTGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCATCTTGCCAGAGATAGATAGATTTTTTTTTTCTTTCCTGAG  787

seq1  GGAACTTTTAAGAATGTGTTTAAATCCCCATGGCATGTTGGAATAATCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTTAAGAATGTGTTTAAATCCCCATGGCATGTTGGAATAATCAT  837

seq1  TAATGTTTACAGTTGCTATGGTAACAGAAAATGCTGGCAATTGTGTAGGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTACAGTTGCTATGGTAACAGAAAATGCTGGCAATTGTGTAGGA  887

seq1  AAGACGCCTGAGAGGCAAAGATAAGCTGTGTCAATTATTGAACATCTGTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCCTGAGAGGCAAAGATAAGCTGTGTCAATTATTGAACATCTGTC  937

seq1  AAACAGCCAATTTAAAGTGACAGATAAAGAGCTAGGAATCGAAGGTGGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCAATTTAAAGTGACAGATAAAGAGCTAGGAATCGAAGGTGGAA  987

seq1  AAAAATATCTTTACTAACACACAGTTAAGAACATCAGGTTTGTATTGTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCTTTACTAACACACAGTTAAGAACATCAGGTTTGTATTGTTT  1037

seq1  TGCCACTAATGTAGAAAAATAATTAGATTCTCTTTTCATCCACATAAAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTAATGTAGAAAAATAATTAGATTCTCTTTTCATCCACATAAAAG  1087

seq1  AAATATTTTCTAGTGCAAGCAATGGCTGCATATGTATTTTTTTTAATTCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCTAGTGCAAGCAATGGCTGCATATGTATTTTTTTTAATTCT  1137

seq1  CTAATAATCTTCATCTGTCTCTACAGAATGCTACATTTTACTTTCCTGAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATCTTCATCTGTCTCTACAGAATGCTACATTTTACTTTCCTGAA  1187

seq1  TTC  1196
      |||
seq2  TTC  1190