BAC Information

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BAC

Clone NameB6Ng01-005F16
Chromosome6 (Build37)
Map Location 87,277,018 - 87,439,928
singlet/doubletdoublet
Overlap geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Upstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005F16.bB6Ng01-005F16.g
ACCDH842511DH842512
length921838
definitionDH842511|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F16, 5' end.DH842512|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,277,018 - 87,277,936)(87,439,095 - 87,439,928)
sequence
gaattctccctggagttcagttaggaagggtgtgttgccttggcttccat
ttgttctccagcaaggaggaaggccactgtccactgagctgagtgccagc
tgttcttgtctttctgctcagcctcacacttactgtgagagtgaaggact
cacaccacaatcatctccggagtgttccccagtgagcctggacccagggt
gggtgggacccagggccttagcacactcccttctcactggtccacttcct
cctgaccactgcttctcctgctcagatgaatcctttcatgctaggaatca
acaagcttttaaaaattatttaaattcattaattagtttggttgggggca
gggggtaggttttctgaatagctgtcttgtgccccctgtgtagtgcctgc
agaggccaggaaagagcaccagaattcttaggagtggggttacagacgac
tgtgagccaccatgtgggtgctgggagtcaaacccagctcctctgcaaga
gcgccaagtattcctaaccacgaggctctccagcctcaaaggcagcaagc
ttggtgtgtgttgctttgctttttcaacctttagcaaggattcttcacaa
agtggagcctctgcttggtggctcttgaaaatcagtgtagaggcaatcta
ttaatttttggttatcacaatgatcagggaagagaatctgaaattaacaa
ttaattaatgatatttaataccctcattccctcataatgaaagactatct
caccaaattgcatctccatcaagacacacgggtgggagccagacactcca
aagtcacgctctgaattggggacagaagagttccttctgtgtaggaactc
ttaacactgttgcctcagtgaaggactacttcactggctgtccatctggc
aaatccctttagattccatca
gaattccaagtgtttcccgtgtggtcaggtgccttgattgcagaagtggg
aaggtggtttgagaggcacctcttagcaattataagaaattgagcttctc
tgctagaaggacagaaagccactgggaaggtctaggtagagtggcatgat
acggctcatgtttaaaattcatgtgagttgagaataaaatgtaaattata
gggccaaggacagagcagggtaccagtgaagaagttcctgcagtgagaca
ccagaggcagtgacttaaggaagcatttcctaaggaccttcaggaactgg
taaaccaagaagatgtcttttgacagtgcatgtttgtagcaaagaggagc
accagagatttggcccaggaggacttccgcagggaggaagagagccttgc
ttggtgtttggctaggcctcattgggtagagtcctggcagttctggggtt
cagtcttagtaactcttaagtgggtaacagcacaacttctcaccccattt
caaaggtaccctgtggttactcaggtagcttttggttctctcctgagcat
cttttctttccaattctaccccctggagatacccacaggaaaggcttttt
ctggataagagacaatggcaagctgggtttagaatcagttcatctcaaac
ggtgagagacacttggcatgctgataccaagctaggtggaggtgaccaga
agcaaagggattggaaagctggtttcagcaggaaattccatggctgggcc
cctaagacagctggagtgggctttcttgtgatgagctggggttgtaggaa
gagcaggctttaatagcctcctaataattgagaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87277018_87277936
seq2: B6Ng01-005F16.b_48_968

seq1  GAATTCTCCCTGGAGTTCAGTTAGGAAGGGTGTGTTGCCTTGGCTTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGGAGTTCAGTTAGGAAGGGTGTGTTGCCTTGGCTTCCAT  50

seq1  TTGTTCTCCAGCAAGGAGGAAGGCCACTGTCCACTGAGCTGAGTGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCAGCAAGGAGGAAGGCCACTGTCCACTGAGCTGAGTGCCAGC  100

seq1  TGTTCTTGTCTTTCTGCTCAGCCTCACACTTACTGTGAGAGTGAAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTCTTTCTGCTCAGCCTCACACTTACTGTGAGAGTGAAGGACT  150

seq1  CACACCACAATCATCTCCGGAGTGTTCCCCAGTGAGCCTGGACCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACAATCATCTCCGGAGTGTTCCCCAGTGAGCCTGGACCCAGGGT  200

seq1  GGGTGGGACCCAGGGCCTTAGCACACTCCCTTCTCACTGGTCCACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGACCCAGGGCCTTAGCACACTCCCTTCTCACTGGTCCACTTCCT  250

seq1  CCTGACCACTGCTTCTCCTGCTCAGATGAATCCTTTCATGCTAGGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCACTGCTTCTCCTGCTCAGATGAATCCTTTCATGCTAGGAATCA  300

seq1  ACAAGCTTTTAAAAATTATTTAAATTCATTAATTAGTTTGGTTGGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTTAAAAATTATTTAAATTCATTAATTAGTTTGGTTGGGGGCA  350

seq1  GGGGGTAGGTTTTCTGAATAGCTGTCTTGTGCCCCCTGTGTAGTGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGGTTTTCTGAATAGCTGTCTTGTGCCCCCTGTGTAGTGCCTGC  400

seq1  AGAGGCCAGGAAAGAGCACCAGAATTCTTAGGAGTGGGGTTACAGACGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGGAAAGAGCACCAGAATTCTTAGGAGTGGGGTTACAGACGAC  450

seq1  TGTGAGCCACCATGTGGGTGCTGGGAGTCAAACCCAGCTCCTCTGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGGTGCTGGGAGTCAAACCCAGCTCCTCTGCAAGA  500

seq1  GCGCCAAGTATTCCTAACCACGAGGCTCTCCAGCCTCAAAGGCAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAAGTATTCCTAACCACGAGGCTCTCCAGCCTCAAAGGCAGCAAGC  550

seq1  TTGGTGTGTGTTGCTTTGC-TTTTCAACCTTTAGCAAGGATTCTTCACAA  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGGTGTGTGTTGCTTTGCTTTTTCAACCTTTAGCAAGGATTCTTCACAA  600

seq1  AGTGGAGCCTCTGCTTGGTGGCTCTTGAAAATCAGTGTAGAGGCAATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCCTCTGCTTGGTGGCTCTTGAAAATCAGTGTAGAGGCAATCTA  650

seq1  TTAATTTTTGGTTATCACAATGATCA-GGAAGAGAATCATGAAATTAACA  698
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TTAATTTTTGGTTATCACAATGATCAGGGAAGAGAATC-TGAAATTAACA  699

seq1  ATTAATTAATGATATTTAATACCCTCATTCCTTCATAATGAAAGACTATC  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTAATTAATGATATTTAATACCCTCATTCCCTCATAATGAAAGACTATC  749

seq1  TCACCAAATTGCATCTCCATCAAGACACACGGGTGGGAGCCAGACACTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAATTGCATCTCCATCAAGACACACGGGTGGGAGCCAGACACTCC  799

seq1  AAAGTCACGCTCTGAATT-GGGACAGAAGAGTTCC-TCTGTGTAGGAACT  846
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AAAGTCACGCTCTGAATTGGGGACAGAAGAGTTCCTTCTGTGTAGGAACT  849

seq1  CTTAACACTGTTGCCTCAGTGGAGGACGACTTCACTGGCTGTCCATCCTG  896
      ||||||||||||||||||||| ||||| |||||||||||||||||| |||
seq2  CTTAACACTGTTGCCTCAGTGAAGGACTACTTCACTGGCTGTCCAT-CTG  898

seq1  TCAAATCCCCTTAGATTCCACCA  919
       |||||||| |||||||||| ||
seq2  GCAAATCCCTTTAGATTCCATCA  921

seq1: chr6_87439095_87439928
seq2: B6Ng01-005F16.g_69_906 (reverse)

seq1  AATCCTCTCAGTTA-TAGGAGGCTATTGAAGCCTGCTCTTCCTACAACCC  49
      |||||||||| ||| |||||||||||| ||||||||||||||||||||||
seq2  AATCCTCTCAATTATTAGGAGGCTATTAAAGCCTGCTCTTCCTACAACCC  50

seq1  CAGCTCATCACAAGAAAGCCCACTCCAGCTGTCCTAGGGGCCCAGCCATG  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCTCATCACAAGAAAGCCCACTCCAGCTGTCTTAGGGGCCCAGCCATG  100

seq1  GAATTTCCTGCTGAAACCAGCTTTCCAATCCCTTTGCTTCTGGTCACCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTGCTGAAACCAGCTTTCCAATCCCTTTGCTTCTGGTCACCTC  150

seq1  CACCTAGCTTGGTATCAGCATGCCAAGTGTCTCTCACCGTTTGAGATGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCTTGGTATCAGCATGCCAAGTGTCTCTCACCGTTTGAGATGAA  200

seq1  CTGATTCT-AACCCAGCTTGCCATTGTCTCTTATCCAG-AAAAGCCTTTC  247
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CTGATTCTAAACCCAGCTTGCCATTGTCTCTTATCCAGAAAAAGCCTTTC  250

seq1  CTGTGGGTATCTCCAGGGGGTAGAATTGGAAAGAAAAGATGCTCAGGAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTATCTCCAGGGGGTAGAATTGGAAAGAAAAGATGCTCAGGAGA  300

seq1  GAACCAAAAGCTACCTGAGTAACCACAGGGTACCTTTGAAATGGGGTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAAGCTACCTGAGTAACCACAGGGTACCTTTGAAATGGGGTGAG  350

seq1  AAGTTGTGCTGTTACCCACTTAAGAGTTACTAAGACTGAACCCCAGAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGCTGTTACCCACTTAAGAGTTACTAAGACTGAACCCCAGAACT  400

seq1  GCCAGGACTCTACCCAATGAGGCCTAGCCAAACACCAAGCAAGGCTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGACTCTACCCAATGAGGCCTAGCCAAACACCAAGCAAGGCTCTCT  450

seq1  TCCTCCCTGCGGAAGTCCTCCTGGGCCAAATCTCTGGTGCTCCTCTTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGCGGAAGTCCTCCTGGGCCAAATCTCTGGTGCTCCTCTTTGC  500

seq1  TACAAACATGCACTGTCAAAAGACATCTTCTTGGTTTACCAGTTCCTGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACATGCACTGTCAAAAGACATCTTCTTGGTTTACCAGTTCCTGAA  550

seq1  GGTCCTTAGGAAATGCTTCCTTAAGTCACTGCCTCTGGTGTCTCACTGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTAGGAAATGCTTCCTTAAGTCACTGCCTCTGGTGTCTCACTGCA  600

seq1  GGAACTTCTTCACTGGTACCCTGCTCTGTCCTTGGCCCTATAATTTACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCTTCACTGGTACCCTGCTCTGTCCTTGGCCCTATAATTTACAT  650

seq1  TTTATTCTCAACTCACATGAATTTTAAACATGAGCCGTATCATGCCACTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCAACTCACATGAATTTTAAACATGAGCCGTATCATGCCACTC  700

seq1  TACCTAGACCTTCCCAGTGGCTTTCTGTCCTTCTAGCAGAGAAGCTCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGACCTTCCCAGTGGCTTTCTGTCCTTCTAGCAGAGAAGCTCAAT  750

seq1  TTCTTATAATTGCTAAGAGGTGCCTCTCAAACCACCTTCCCACTTCTGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAATTGCTAAGAGGTGCCTCTCAAACCACCTTCCCACTTCTGCA  800

seq1  ATCAAGGCACCTGACCACACGGG-TCCACTTGGAATTC  834
      |||||||||||||||||||||||   ||||||||||||
seq2  ATCAAGGCACCTGACCACACGGGAAACACTTGGAATTC  838