BAC Information

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BAC

Clone NameB6Ng01-007B05
Chromosome6 (Build37)
Map Location 57,980,755 - 58,122,681
singlet/doubletdoublet
Overlap geneLOC626649, LOC626659, LOC626672, LOC666893
Upstream geneV1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683
Downstream geneLOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007B05.bB6Ng01-007B05.g
ACCDH843756DH843757
length1,142759
definitionDH843756|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B05, 5' end.DH843757|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,980,755 - 57,981,905)(58,122,120 - 58,122,681)
sequence
gaattcctaggtatatacaaacttaacagaccagaaaattacatatatac
agtaaatttatatttgtttggtatatttagcttttggtaacgataaataa
ataaatacagctagttaatgagaaaatgcaaaatgcaatttaatatgatg
caaatgtattcgtattatagatgtactcctgcacaccaataaatgtcagg
tctttgtttttcacactctaagatatctcaggtgtcttgttacaaggatg
gaaaagtaacacaattgccaatacctaggtggaacttgagcttactatta
ttacagcatacactcagaaaaatgctatgtcagacgtgctcctaaaatat
gatatctgcaactactttttacacatatacaaatgttcactcatttcatg
acttgttcactcgatacataatacacattgatagtcttcactctattagc
ttttctttctctctacccatactacttctaggcacctgtcctctttgcaa
taactctttctactgttacatataatcagatatcacattaagagaaatct
atgttctttcctaagtcattacacttatatcttttatgtctacaagcttc
tgatgtatgcttattaaacagtaccactaaaaatcattactcatcagaag
ttctctatccttgttttacagaaaatcctgtttccttccaccacctactt
acagctttcactgtaatgaagagaaaaagaaacactcaccaagcttatcc
tttgataaacatccttgtagaatgatatccctaaaagtagaaataaagga
agaaatatcatcagctcatctgcctctagaaccacagttatcatgtcatg
taggcatgtcatgtaggcaattctgacctttaggtgattacaaagtggta
tcatgaaatggaaaagttaacttctctaattccaggagaatcgtgagtag
aacagctgagttcttggtttcccatgtgtgagccatgcctcttccaggct
atatctgtctgtatggattgattgatcccagtacctgtggacaaaacaat
agaaaaataaatattgtctcatttaaatggagtaagaaaacttttgaccc
agtatcatctgcttcaacagacatgggtaactcatccttact
gaattcctaaaaagcagctgtatttgcagaaacggagtgactagaatttc
atcactgtggaaagactggaatgtggtaggtccagaaactaattaccttg
tctttggcaagtattagtcttgccatggtgtcagaactaacatcctgtga
ctaatggataaaaatttattaatttaccagattgcaagcttctaccaacc
tcaaaactaagcagagtattaaatagtatcttgggcctataaaaaagatt
tctcaatttctatgtacctacttctctgctgtaactccaaggtattttaa
acttgctttgatttatgactttttgttctataaagctataatacttcatg
aaactgtttctacatttgaacatgaatttgtggtaaagtctgtgttccta
ggccatggtcacccaaaatgacttctgaaaaactatcttgtattccctta
aggttagagatgtggttttgagtcagcacttttgacccaagaaagaggaa
catttctccagtttccctatgaggccactgatcatcatgaggtattgaag
aaacctgggcctaaagaaagaagtgatatgtgcctgggcctattccaaaa
cattgaagatcccagagcaaaagcaaggagtgatgtgggcctgggcctat
tcctgaaatttgaaggggcctgggtggaattcaagacaagaagaggacct
gggcctatgcctgacccttgaagaagcccgggccaaaaacaagaagtgat
gtgggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57980755_57981905
seq2: B6Ng01-007B05.b_44_1185

seq1  GAATTCCTAGGTATATACAAACTTAACAGACCAGAAAATTACATATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTATATACAAACTTAACAGACCAGAAAATTACATATATAC  50

seq1  AGTAAATTTATATTTGTTTGGTATATTTAGCTTTTGGTAACGATAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTATATTTGTTTGGTATATTTAGCTTTTGGTAACGATAAATAA  100

seq1  ATAAATACAGCTAGTTAATGAGAAAATGCAAAATGCAATTTAATATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACAGCTAGTTAATGAGAAAATGCAAAATGCAATTTAATATGATG  150

seq1  CAAATGTATTCGTATTATAGATGTACTCCTGCACACCAATAAATGTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTATTCGTATTATAGATGTACTCCTGCACACCAATAAATGTCAGG  200

seq1  TCTTTGTTTTTCACACTCTAAGATATCTCAGGTGTCTTGTTACAAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTTCACACTCTAAGATATCTCAGGTGTCTTGTTACAAGGATG  250

seq1  GAAAAGTAACACAATTGCCAATACCTAGGTGGAACTTGAGCTTACTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAACACAATTGCCAATACCTAGGTGGAACTTGAGCTTACTATTA  300

seq1  TTACAGCATACACTCAGAAAAATGCTATGTCAGACGTGCTCCTAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCATACACTCAGAAAAATGCTATGTCAGACGTGCTCCTAAAATAT  350

seq1  GATATCTGCAACTACTTTTTACACATATACAAATGTTCACTCATTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGCAACTACTTTTTACACATATACAAATGTTCACTCATTTCATG  400

seq1  ACTTGTTCACTCGATACATAATACACATTGATAGTCTTCACTCTATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCACTCGATACATAATACACATTGATAGTCTTCACTCTATTAGC  450

seq1  TTTTCTTTCTCTCTACCCATACTACTTCTAGGCACCTGTCCTCTTTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTCTCTACCCATACTACTTCTAGGCACCTGTCCTCTTTGCAA  500

seq1  TAACTCTTTCTACTGTTACATATAATCAGATATCACATTAAGAGAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCTACTGTTACATATAATCAGATATCACATTAAGAGAAATCT  550

seq1  ATGTTCTTTCCTAAGTCATTACACTTATATCTTTTATGTCTACAAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTCCTAAGTCATTACACTTATATCTTTTATGTCTACAAGCTTC  600

seq1  TGATGTATGCTTATTAAACAGTACCACTAAAAATCATTACTCATCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATGCTTATTAAACAGTACCACTAAAAATCATTACTCATCAGAAG  650

seq1  TTCTCTATCCTTGTTTTACAGAAAATCCTGTTTCCTTCCACCACCTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATCCTTGTTTTACAGAAAATCCTGTTTCCTTCCACCACCTACTT  700

seq1  ACAGCTTTCACTGTAATGAAGAGAAAAAGAAACACTCACCAAGCTTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTCACTGTAATGAAGAGAAAAAGAAACACTCACCAAGCTTATCC  750

seq1  TTTGATAAACATCCTTGTAGAATGATATCCCTAAAAGTAGAAAT-AAGGA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGATAAACATCCTTGTAGAATGATATCCCTAAAAGTAGAAATAAAGGA  800

seq1  AGAAATATCATCAGCTCATCTGCCTCTAGAACCACAGTTATCATGTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCATCAGCTCATCTGCCTCTAGAACCACAGTTATCATGTCATG  850

seq1  TAGGCATGTCATGTAGGCAATTCTGACCTTTAGGTGATTACAAAGTGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGTCATGTAGGCAATTCTGACCTTTAGGTGATTACAAAGTGGTA  900

seq1  TCATGAAATGGAAAAGTTAACTTCTCTAATTCCAGGAGAATCGTGAAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATGAAATGGAAAAGTTAACTTCTCTAATTCCAGGAGAATCGTG-AGTA  949

seq1  GGAACAGCTGAGTTCTTGGTTTCCCATGTGTGAGCCATGCCTC-TCCAGG  998
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -GAACAGCTGAGTTCTTGGTTTCCCATGTGTGAGCCATGCCTCTTCCAGG  998

seq1  CTATATCTGTCTGTATGGATTGATTGATCCCAGTACCTGTGGACAAAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTGTCTGTATGGATTGATTGATCCCAGTACCTGTGGACAAAACA  1048

seq1  ATAGGAAAAATAATAGTGTCTCATTTAAAATGAGTAAGAAAACTTTTTGA  1098
      |||| ||||  |||| |||||||||||||  |||||||||||| ||||||
seq2  ATAGAAAAATAAATATTGTCTCATTTAAATGGAGTAAGAAAAC-TTTTGA  1097

seq1  CCCAAGGTATCCATCCTGCTTCCAAAACAGTCATGGTGTACTCCATCCTT  1148
      ||||  |||| ||| |||||||   ||||| ||||| |||   |||||||
seq2  CCCA--GTAT-CAT-CTGCTTC---AACAGACATGG-GTAACTCATCCTT  1139

seq1  ACT  1151
      |||
seq2  ACT  1142

seq1: chr6_58122120_58122681
seq2: B6Ng01-007B05.g_268_829 (reverse)

seq1  CAGGCCCACATCACTTCTTGTTTTTGGCCCGGGCTTCTTCAAGGGTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCACATCACTTCTTGTTTTTGGCCCGGGCTTCTTCAAGGGTCAGG  50

seq1  CATAGGCCCAGGTCCTCTTCTTGTCTTGAATTCCACCCAGGCCCCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCCAGGTCCTCTTCTTGTCTTGAATTCCACCCAGGCCCCTTCAA  100

seq1  ATTTCAGGAATAGGCCCAGGCCCACATCACTCCTTGCTTTTGCTCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGAATAGGCCCAGGCCCACATCACTCCTTGCTTTTGCTCTGGGA  150

seq1  TCTTCAATGTTTTGGAATAGGCCCAGGCACATATCACTTCTTTCTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATGTTTTGGAATAGGCCCAGGCACATATCACTTCTTTCTTTAGG  200

seq1  CCCAGGTTTCTTCAATACCTCATGATGATCAGTGGCCTCATAGGGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTTCTTCAATACCTCATGATGATCAGTGGCCTCATAGGGAAACT  250

seq1  GGAGAAATGTTCCTCTTTCTTGGGTCAAAAGTGCTGACTCAAAACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGTTCCTCTTTCTTGGGTCAAAAGTGCTGACTCAAAACCACAT  300

seq1  CTCTAACCTTAAGGGAATACAAGATAGTTTTTCAGAAGTCATTTTGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCTTAAGGGAATACAAGATAGTTTTTCAGAAGTCATTTTGGGTG  350

seq1  ACCATGGCCTAGGAACACAGACTTTACCACAAATTCATGTTCAAATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCCTAGGAACACAGACTTTACCACAAATTCATGTTCAAATGTAG  400

seq1  AAACAGTTTCATGAAGTATTATAGCTTTATAGAACAAAAAGTCATAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTCATGAAGTATTATAGCTTTATAGAACAAAAAGTCATAAATC  450

seq1  AAAGCAAGTTTAAAATACCTTGGAGTTACAGCAGAGAAGTAGGTACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGTTTAAAATACCTTGGAGTTACAGCAGAGAAGTAGGTACATAG  500

seq1  AAATTGAGAAATCTTTTTTATAGGCCCAAGATACTATTTAATACTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGAAATCTTTTTTATAGGCCCAAGATACTATTTAATACTCTGCT  550

seq1  TAGTTTTGAGGT  562
      ||||||||||||
seq2  TAGTTTTGAGGT  562