BAC Information

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BAC

Clone NameB6Ng01-009A14
Chromosome6 (Build37)
Map Location 115,169,431 - 115,297,058
singlet/doubletdoublet
Overlap geneSyn2, Timp4
Upstream geneSlc6a11, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420
Downstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A14.bB6Ng01-009A14.g
ACCDH845092DH845093
length1,1371,090
definitionDH845092|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A14, 5' end.DH845093|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,295,887 - 115,297,058)(115,169,431 - 115,170,528)
sequence
gaattctttacacatatttaattggtatagggatatgattatatagcata
gtaaggttgtatgtgtagctcagggctagggtacatgaactacttggttt
gagtctcaaaccaaaaacttgaataatggaacctctacctgtttgcattt
ccctaaactccttttacttaagtaactatcaagacacaccttcaatagtc
ctaaggacacagagcaggatgagcgcacagctcaatgctcagaatgcacc
atgcacagaaatacaagaccctgggctccatgcccagcaatggaagaaaa
taagtaaataaattactttggtcatttaagaacagtgcacacagttatag
tcttaggtcaagggacataaagatgaatttttaacatgtagaaaaattca
acatctaaagcggtttcctttagcagcactgtgccagcacacaactcata
catttatttgccaatttgcttaattaccatgaatactttttcaattataa
ttttaaaatccttattatcattttgatttaaaaacaaaataacaaaaaca
aaacaaaacaaaaaaacaggaaaaacatgagggagaccgggctcagtggg
gaagctacaacagcttgcaaggagttttttgttgttgttgtttttgtttg
ttttcgagacagggtttctctgtatagccctggctgtcctggaactcact
ttgtagaccagggtggcctcgaactcagaaatccgcctgcctctgcctcc
tgagtgctgggattaaaggtgtgtaccaccaccaccactgcctggtgcaa
ggagtttttgattctgttttttctttttttttcttttttcaatgacttct
cttacataagagccatataatttctccatagggagaaaataccgcagggc
cacattatgcctttaatttttcctccagatatgtttacagtgaacaccga
gggagaagcgactcatgcttaaagccgacgtcagcgcccacagcattaga
catggtaattttacatcaatgagagttatttaggagaaactactgaattg
cagaagttaccttgtccaacagctgtcatgaacaccattagcctacaaca
ttaaaatatctctggtgacttagacctggaacggttc
gaattcacttatatatagttcagaggtttggtccattatcatggcgggaa
gcatggtggcacacaggcagacatggtgctggagagatagctgagagttt
tacatccagatcagcaggaagagagagaaaaactgagcctggcttgaata
cttgaaacctcaaagtccactcccagtgacacacttcttccaataaggcc
acacctcctaatagtgacactccctgagcttatgggggggtgagcatttc
atccaaaacacagtggcagtattattaatcagatcaacctagatattcat
cagtggataaagaaaatgtggtatatatactcaatggggttttatttgac
cagaaagaagaacatgagtgtgtaatttgcaggaaactagatggcacaaa
aattctattggacaagataagccagacttagaaaaacaaatattctatga
gagagagaccattgagaaaaggaagggggtccagtatgagctgaaaatgg
agacatgggacagtaatggatgggggggagatatgatcaaagtacattat
atacaagcatgaaaatgcaatagtgaacccaccactttgttcagttaatg
tacactaatgaaaacttaaagtttgggatgtttttcttttgtaagccact
gtgagaaaaaaaaaagaaaattaacagttataaaagttgcctgttagtca
gaaaagtatcagattgtacataaaggagttggctgtctctactagcatgc
ataagtaagctttttaaagcgatgggctcttttagaagtcatgtttactt
ggaaatgtgtgttcaaatattaatgggcattgttaatgatcaattattta
aagtatcaaataaatggaaaactagctaaatatcttagaaagtgaatatc
ttaaaaaattactagtaagtttctgagacttctaggggatgcccattaaa
ggtccatttgtgataatattgttgaattggttgtttattgagactcagtt
tcactacaagaccatgctaaccttgaaccaaaagatttgttcaagatggt
aaatgcccatgggcctggctaagggttggtttttggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115295887_115297058
seq2: B6Ng01-009A14.b_47_1183 (reverse)

seq1  GAACCGTGCCAGGTGCTAAAAGTCACCAGAGATAATTTTAATTGTTGTAG  50
      ||||||| |||||| ||  |||||||||||||| ||||||| ||||||||
seq2  GAACCGTTCCAGGT-CT--AAGTCACCAGAGAT-ATTTTAA-TGTTGTAG  45

seq1  GCATAATGGTGTTCAATGACAGCTGTTTTGGAACAAAAAGGTTACTTCCT  100
      || ||||||||||| ||||||||||  ||||    | ||||| |||| ||
seq2  GC-TAATGGTGTTC-ATGACAGCTG--TTGG----ACAAGGTAACTT-CT  86

seq1  GCAAATTTCAGTAGGTTTTCTCCTAAAATAAACTCTCATTGATTGTTAAA  150
      ||||  ||||||||  |||||||||||   |||||||||||| |||  ||
seq2  GCAA--TTCAGTAG--TTTCTCCTAAA--TAACTCTCATTGA-TGT--AA  127

seq1  AATTACCAATTGTCCTTAATGGCTGTGGGCGCTGACGTCGGCTTTAAGCA  200
      ||||||||  ||||  |||| |||||||||||||||||||||||||||||
seq2  AATTACCA--TGTC--TAAT-GCTGTGGGCGCTGACGTCGGCTTTAAGCA  172

seq1  TGGAGTCGCTTCTCCCTCGGTGTTCACTTGTAAACATTATCTGGAGGAAA  250
      | ||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  T-GAGTCGCTTCTCCCTCGGTGTTCAC-TGTAAACA-TATCTGGAGGAAA  219

seq1  AATTAAAGGCATAATGTGGCCCTGCGGTA-TTTCTCCCTATGGAGAAATT  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTAAAGGCATAATGTGGCCCTGCGGTATTTTCTCCCTATGGAGAAATT  269

seq1  ATATGGCTCTTATGTAAGAGAAGTCATTGAAAAAAGAAAAAAAAAAAAAA  349
      ||||||||||||||||||||||||||||||||||||     |||||||||
seq2  ATATGGCTCTTATGTAAGAGAAGTCATTGAAAAAAG-----AAAAAAAAA  314

seq1  AAAAAAACAGAATCAAAAACTCCTTGCACCAGGCAGTGGTGGTGGTGGTA  399
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAGAATCAAAAACTCCTTGCACCAGGCAGTGGTGGTGGTGGTA  364

seq1  CACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAG  414

seq1  TTCGAGGCCACCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCACCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAT  464

seq1  ACAGAGAAACCCTGTCTCGAAAACAAACAAAAACAACAACAACAAAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAAACAAACAAAAACAACAACAACAAAAAAC  514

seq1  TCCTTGCAAGCTGTTGTAGCTTCCCCACTGAGCCCGGTCTCCCTCATGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAAGCTGTTGTAGCTTCCCCACTGAGCCCGGTCTCCCTCATGTT  564

seq1  TTTCCTGTTTTTTTGTTTTGTTTTGTTTTTGTTATTTTGTTTTTAAATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTTTTTGTTTTGTTTTGTTTTTGTTATTTTGTTTTTAAATCA  614

seq1  AAATGATAATAAGGATTTTAAAATTATAATTGAAAAAGTATTCATGGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAATAAGGATTTTAAAATTATAATTGAAAAAGTATTCATGGTAA  664

seq1  TTAAGCAAATTGGCAAATAAATGTATGAGTTGTGTGCTGGCACAGTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAATTGGCAAATAAATGTATGAGTTGTGTGCTGGCACAGTGCTG  714

seq1  CTAAAGGAAACCGCTTTAGATGTTGAATTTTTCTACATGTTAAAAATTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAAACCGCTTTAGATGTTGAATTTTTCTACATGTTAAAAATTCA  764

seq1  TCTTTATGTCCCTTGACCTAAGACTATAACTGTGTGCACTGTTCTTAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTCCCTTGACCTAAGACTATAACTGTGTGCACTGTTCTTAAAT  814

seq1  GACCAAAGTAATTTATTTACTTATTTTCTTCCATTGCTGGGCATGGAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGTAATTTATTTACTTATTTTCTTCCATTGCTGGGCATGGAGCC  864

seq1  CAGGGTCTTGTATTTCTGTGCATGGTGCATTCTGAGCATTGAGCTGTGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTGTATTTCTGTGCATGGTGCATTCTGAGCATTGAGCTGTGCG  914

seq1  CTCATCCTGCTCTGTGTCCTTAGGACTATTGAAGGTGTGTCTTGATAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTGCTCTGTGTCCTTAGGACTATTGAAGGTGTGTCTTGATAGTT  964

seq1  ACTTAAGTAAAAGGAGTTTAGGGAAATGCAAACAGGTAGAGGTTCCATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTAAAAGGAGTTTAGGGAAATGCAAACAGGTAGAGGTTCCATTA  1014

seq1  TTCAAGTTTTTGGTTTGAGACTCAAACCAAGTAGTTCATGTACCCTAGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTTGGTTTGAGACTCAAACCAAGTAGTTCATGTACCCTAGCC  1064

seq1  CTGAGCTACACATACAACCTTACTATGCTATATAATCATATCCCTATACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTACACATACAACCTTACTATGCTATATAATCATATCCCTATACC  1114

seq1  AATTAAATATGTGTAAAGAATTC  1172
      |||||||||||||||||||||||
seq2  AATTAAATATGTGTAAAGAATTC  1137

seq1: chr6_115169431_115170528
seq2: B6Ng01-009A14.g_66_1155

seq1  GAATTCACTTATATATAGTTCAGAGGTTTGGTCCATTATCATGGCGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATATATAGTTCAGAGGTTTGGTCCATTATCATGGCGGGAA  50

seq1  GCATGGTGGCACACAGGCAGACATGGTGCTGGAGAGATAGCTGAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGCACACAGGCAGACATGGTGCTGGAGAGATAGCTGAGAGTTT  100

seq1  TACATCCAGATCAGCAGGAAGAGAGAGAAAAACTGAGCCTGGCTTGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGATCAGCAGGAAGAGAGAGAAAAACTGAGCCTGGCTTGAATA  150

seq1  CTTGAAACCTCAAAGTCCACTCCCAGTGACACACTTCTTCCAATAAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACCTCAAAGTCCACTCCCAGTGACACACTTCTTCCAATAAGGCC  200

seq1  ACACCTCCTAATAGTGACACTCCCTGAGCTTATGGGGGGGTGAGCATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTAATAGTGACACTCCCTGAGCTTATGGGGGGGTGAGCATTTC  250

seq1  ATCCAAAACACAGTGGCAGTATTATTAATCAGATCAACCTAGATATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACACAGTGGCAGTATTATTAATCAGATCAACCTAGATATTCAT  300

seq1  CAGTGGATAAAGAAAATGTGGTATATATACTCAATGGGGTTTTATTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATAAAGAAAATGTGGTATATATACTCAATGGGGTTTTATTTGAC  350

seq1  CAGAAAGAAGAACATGAGTGTGTAATTTGCAGGAAACTAGATGGCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGAACATGAGTGTGTAATTTGCAGGAAACTAGATGGCACAAA  400

seq1  AATTCTATTGGACAAGATAAGCCAGACTTAGAAAAACAAATATTCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTGGACAAGATAAGCCAGACTTAGAAAAACAAATATTCTATGA  450

seq1  GAGAGAGACCATTGAGAAAAGGAAGGGGGTCCAGTATGAGCTGAAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACCATTGAGAAAAGGAAGGGGGTCCAGTATGAGCTGAAAATGG  500

seq1  AGACATGGGACAGTAATGGATGGGGGGGAGATATGATCAAAGTACATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGGACAGTAATGGATGGGGGGGAGATATGATCAAAGTACATTAT  550

seq1  ATACAAGCATGAAAATGCAATAGTGAACCCACCACTTTGTTCAGTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCATGAAAATGCAATAGTGAACCCACCACTTTGTTCAGTTAATG  600

seq1  TACACTAATGAAAACTTAAAGTTTGGGATGTTTTTCTTTTGTAAGCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAATGAAAACTTAAAGTTTGGGATGTTTTTCTTTTGTAAGCCACT  650

seq1  GTGAGAAAAAAAAAAGAAAATTAACAGTTATAAAAGTTGCCTGTTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAAAAAAAAGAAAATTAACAGTTATAAAAGTTGCCTGTTAGTCA  700

seq1  GAAAAGTATCAGATTGTACATAAAGGAGTTGGCTGTCTCTACTAGCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTATCAGATTGTACATAAAGGAGTTGGCTGTCTCTACTAGCATGC  750

seq1  ATAAGTAAGCTTTTTAAAGCGATGGGCTCTTTTAGAAGTCATGTTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAGCTTTTTAAAGCGATGGGCTCTTTTAGAAGTCATGTTTACTT  800

seq1  GGAAATGTGTGTTCAAATATTAATGGGCATTGTT-ATGATCAATTATTTA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAAATGTGTGTTCAAATATTAATGGGCATTGTTAATGATCAATTATTTA  850

seq1  AAGTATCAAATAAATGGAAAACTAGCATAAATATCTTAGAAAGTGAATAT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGTATCAAATAAATGGAAAACTAGC-TAAATATCTTAGAAAGTGAATAT  899

seq1  CTTAGAAAATTACTAGTAAG-TTCTGAGACTTTCTAGTGGATGCCCATTA  948
      |||| ||||||||||||||| ||||||||| |||||| ||||||||||| 
seq2  CTTAAAAAATTACTAGTAAGTTTCTGAGAC-TTCTAGGGGATGCCCATT-  947

seq1  AAAGTTCCATTTGTTGATATTATTGTTGAATTTGTTTGTTTATTTGAGAC  998
      |||| |||||||| ||||| |||||||||| ||| ||||||| |||||||
seq2  AAAGGTCCATTTG-TGATAATATTGTTGAA-TTGGTTGTTTA-TTGAGAC  994

seq1  ACAGTTTCACTACATAGACCAGGCTAACCTTGAACCAAAAGAGTTTGTTC  1048
       ||||||||||||| |||||| |||||||||||||||||||| |||||||
seq2  TCAGTTTCACTACA-AGACCATGCTAACCTTGAACCAAAAGA-TTTGTTC  1042

seq1  AGAGATGGTGAATGCCACTAGGCCTGGCTAAAGGTTTGGTTTTTGTTTTT  1098
      | ||||||| ||||||  | ||||||||| |||| |||||||||| ||||
seq2  A-AGATGGTAAATGCCCATGGGCCTGGCT-AAGGGTTGGTTTTTGGTTTT  1090