BAC Information

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BAC

Clone NameB6Ng01-011C24
Chromosome5 (Build37)6 (Build37)
Map Location 56,781,240 - 56,781,45676,457,245 - 76,458,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011C24.bB6Ng01-011C24.g
ACCDH846638DH846639
length1,0061,136
definitionDH846638|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C24, 5' end.DH846639|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,781,240 - 56,781,456)(76,457,245 - 76,458,372)
sequence
gaattcccctatactagggcatagactctttgcaagaccaaaggcctctc
ctcctattgatgacttactaggccgtcctctgctacatatgcagctagag
acacaagtcccatcatgtgttttctttgattgttggtttagtcccaggga
gctctgggggtagtgattagttcatattgttgttcctcctatatggccgc
agatcccttcagctccttgggtactttatctagctccttcattggggacc
ctgtgtttcatccaataaattactgtgagcacccacttctgtatgtgcca
ggcattggcctagcctcacagaagacagctttatcagggtcctgtcagct
aaatcttgttggcatatgcagtagtgtctgggtttgatggtagtttatgg
gatggatcccaggtggggcagtctctaggtatgcactcactgataactgg
atattagcccagaaacttagaatacccaagatacaatttgtaaaacacat
gaaactcgagaagagtttcatgaagacagaagtttctggaagacagaaac
gtggatacttcgatccttcttagaaggaagaacaaaatggaaggagttac
ggagacaaagactctgtccttttgctgctatcaacttttaatttagctct
ttatattggcttattgaggacttgtggctggacttgactttgaacacacg
ttaacactctcaaggtctgtagtgtttcaactgttttctagtattaatct
atgtaagcaaagttactgtcagagagcaggcatttcttttttctcctttc
aattttccttctgtgaatattccctggcatccttttcttattgtttattc
tactctgtacccaccctgccagcctggggcttcttgggtttgccccgtgt
ttcctttttctttctttcttctgttctgtagatgctaagcaccagcacca
tacttcatttcatttaataattttctctggattctgaaaacaaatctggc
aaactt
gaattcttgctggcatatgttcccattgagaaccacatgttcattgtcat
tattcccacgatggatggtggcaagaagtttgtcgtttgccactctggtg
tcagcagcaaaggaacactgtctgttgtacaatatccaggtgtatgtgga
ataaagccaaaattagccactcaagtgtaggttaattagagacatttaga
aggtaacactttatgtggaacatgaatcaaagttatattaaagttacaca
gacttcttcaaatatttctacattattctttatatatatatatatatata
tatatatcctaaacaattgccatttgatttttgaaataaaaagagggaaa
tttgttttggttctttcttctttgcatccatccagaacaagctagtgtcg
taaaacaggaagttgaagtattgttagatatgctgaggcatttaggcata
agagtcattctttcacccatttcttccatcatatatgtcaatgtaactct
tgtaaccatacttggtaaataatcactaggatatgatttcaatatttttc
cagaatcatagaattatgctaagtcataaagcaaatcccagggatggctt
gtttcctgattagctagtgatgtctatggatggtcattgaaagaataaag
gctctaaatcagttgagaaacattgagttaggaaatagtttaaactgttt
tgagtgtacatgtcctcagtcctcagaaccttaactacaatccacctttg
aagtcctacaaaacagttaatgacaagtaaatgctgtttatcaatgacca
cctgagtacaaattaacaattttgtagttcattttgaagtttgaagcata
ttgtgctttctgttgaagttttaagaatttacattcatttgtatgtgtgt
gggagttctgtggaggtcctaagttagtttctggtatctacactgatagc
ctcttcccaatatattttgaggggagttctctcaatgacccatgggattt
ggctgactgtttgctcagcaggccctaggatccacttctctggtgactct
atttctacctctggaggttctggcatgagcctcccagccgtaagactaag
atggggggcattgaagatctgctacttaagttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56781240_56781456
seq2: B6Ng01-011C24.b_156_646 (reverse)

seq1  CTTTGTCTCTGTAACTCCTTCCACGGGTGTTTTATTCCCAATTCTAAGAA  50
      ||||||||| |||||||||||||      |||| |||    |||||||||
seq2  CTTTGTCTCCGTAACTCCTTCCA------TTTTGTTCTTCCTTCTAAGAA  44

seq1  GGGACAAAGTGTCCAC-----------------ACTTTGGTCTTCGT---  80
      ||  | |||| |||||                 ||||  |||||| |   
seq2  GGATCGAAGTATCCACGTTTCTGTCTTCCAGAAACTTCTGTCTTCATGAA  94

seq1  --TCTTCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTGTATCTTGGGT  128
        |||||| |||||||||||||||| ||||       |||||||||||||
seq2  ACTCTTCTCGAGTTTCATGTGTTTTACAAA-------TTGTATCTTGGGT  137

seq1  ATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATCATGT  178
      |||||||||||||||||||||||||| |||||||||||| |||| |  | 
seq2  ATTCTAAGTTTCTGGGCTAATATCCAGTTATCAGTGAGTGCATACCTAGA  187

seq1  AAGTTCCATAGAGAACATGGGCACAACAATCAAAGAAAA-----------  217
       | | ||       || ||||   | | |||  | |||            
seq2  GACTGCC-----CCACCTGGG---ATCCATCCCATAAACTACCATCAAAC  229

seq1  --------------------------------------------------  217
                                                        
seq2  CCAGACACTACTGCATATGCCAACAAGATTTAGCTGACAGGACCCTGATA  279

seq1  --------------------------------------------------  217
                                                        
seq2  AAGCTGTCTTCTGTGAGGCTAGGCCAATGCCTGGCACATACAGAAGTGGG  329

seq1  --------------------------------------------------  217
                                                        
seq2  TGCTCACAGTAATTTATTGGATGAAACACAGGGTCCCCAATGAAGGAGCT  379

seq1  --------------------------------------------------  217
                                                        
seq2  AGATAAAGTACCCAAGGAGCTGAAGGGATCTGCGGCCATATAGGAGGAAC  429

seq1  --------------------------------------------------  217
                                                        
seq2  AACAATATGAACTAATCACTACCCCCAGAGCTCCCTGGGACTAAACCAAC  479

seq1  ------------  217
                  
seq2  AATCAAAGAAAA  491

seq1: chr6_76457245_76458372
seq2: B6Ng01-011C24.g_67_1202

seq1  GAATTCTTGCTGGCATATGTTCCCATTGAGAACCACATGTTCATTGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGGCATATGTTCCCATTGAGAACCACATGTTCATTGTCAT  50

seq1  TATTCCCACGATGGATGGTGGCAAGAAGTTTGTCGTTTGCCACTCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCACGATGGATGGTGGCAAGAAGTTTGTCGTTTGCCACTCTGGTG  100

seq1  TCAGCAGCAAAGGAACACTGTCTGTTGTACAATATCCAGGTGTATGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAAAGGAACACTGTCTGTTGTACAATATCCAGGTGTATGTGGA  150

seq1  ATAAAGCCAAAATTAGCCACTCAAGTGTAGGTTAATTAGAGACATTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCAAAATTAGCCACTCAAGTGTAGGTTAATTAGAGACATTTAGA  200

seq1  AGGTAACACTTTATGTGGAACATGAATCAAAGTTATATTAAAGTTACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACACTTTATGTGGAACATGAATCAAAGTTATATTAAAGTTACACA  250

seq1  GACTTCTTCAAATATTTCTACATTATTCTTTATATATATATATATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTCAAATATTTCTACATTATTCTTTATATATATATATATATATA  300

seq1  TATATATCCTAAACAATTGCCATTTGATTTTTGAAATAAAAAGAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCCTAAACAATTGCCATTTGATTTTTGAAATAAAAAGAGGGAAA  350

seq1  TTTGTTTTGGTTCTTTCTTCTTTGCATCCATCCAGAACAAGCTAGTGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGGTTCTTTCTTCTTTGCATCCATCCAGAACAAGCTAGTGTCG  400

seq1  TAAAACAGGAAGTTGAAGTATTGTTAGATATGCTGAGGCATTTAGGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGGAAGTTGAAGTATTGTTAGATATGCTGAGGCATTTAGGCATA  450

seq1  AGAGTCATTCTTTCACCCATTTCTTCCATCATATATGTCAATGTAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATTCTTTCACCCATTTCTTCCATCATATATGTCAATGTAACTCT  500

seq1  TGTAACCATACTTGGTAAATAATCACTAGGATATGATTTCAATATTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATACTTGGTAAATAATCACTAGGATATGATTTCAATATTTTTC  550

seq1  CAGAATCATAGAATTATGCTAAGTCATAAAGCAAATCCCAGGGATGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATAGAATTATGCTAAGTCATAAAGCAAATCCCAGGGATGGCTT  600

seq1  GTTTCCTGATTAGCTAGTGATGTCTATGGATGGTCATTGAAAGAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGATTAGCTAGTGATGTCTATGGATGGTCATTGAAAGAATAAAG  650

seq1  GCTCTAAATCAGTTGAGAAACATTGAGTTAGGAAATAGTTTAAACTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAATCAGTTGAGAAACATTGAGTTAGGAAATAGTTTAAACTGTTT  700

seq1  TGAGTGTACATGTCCTCAGTCCTCAGAACCTTAACTACAATCCACC-TTG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGTGTACATGTCCTCAGTCCTCAGAACCTTAACTACAATCCACCTTTG  750

seq1  AAGTCCTACAAAACAGTTAATGACAAGTAAATGCTGTTTATCAATGACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTACAAAACAGTTAATGACAAGTAAATGCTGTTTATCAATGACCA  800

seq1  CCTGAGTACAAATTAACAATTTTGTAGTTCATTTTGAAGTTTTGAAGCAA  849
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  CCTGAGTACAAATTAACAATTTTGTAGTTCATTTTGAAG-TTTGAAGC-A  848

seq1  TATTGTGCTTTCTGTTGAAGTTTTAAGAATTTACATTCATTTGTATGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCTTTCTGTTGAAGTTTTAAGAATTTACATTCATTTGTATGTGT  898

seq1  GTGGAAG-TCTGTGGAGGTCCTAAGTTAGTTTCTGGTATCTACACTGATA  948
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTTCTGTGGAGGTCCTAAGTTAGTTTCTGGTATCTACACTGATA  948

seq1  G-CTCTTCACAATATATTTTGA-GAGAGTTCTCTCAATGAACACAT-GGA  995
      | |||||| ||||||||||||| | |||||||||||||| || ||| |||
seq2  GCCTCTTCCCAATATATTTTGAGGGGAGTTCTCTCAATG-ACCCATGGGA  997

seq1  TTTGGCTAGACTGGTTTGC-CAGCAAGGCCCTAGGATCCACTTCTCT-GT  1043
      ||||||| |||| |||||| |||| |||||||||||||||||||||| ||
seq2  TTTGGCT-GACT-GTTTGCTCAGC-AGGCCCTAGGATCCACTTCTCTGGT  1044

seq1  GACTCTA-TCCTACCTCTGAGGCTACAGGCATGAGCCT-CCAGCCGTAGG  1091
      ||||||| | |||||||||  | | | ||||||||||| ||||||||| |
seq2  GACTCTATTTCTACCTCTGGAGGTTCTGGCATGAGCCTCCCAGCCGTAAG  1094

seq1  ACTAAGATGGGTG---CTGAAGATCTGC-AC-TCAGTTCTTC  1128
      ||||||||||| |    ||||||||||| || | ||||||||
seq2  ACTAAGATGGGGGGCATTGAAGATCTGCTACTTAAGTTCTTC  1136