BAC Information

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BAC

Clone NameB6Ng01-011K12
Chromosome6 (Build37)
Map Location 76,132,363 - 76,251,358
singlet/doubletdoublet
Overlap geneLOC100042952
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145, EG546907
Downstream geneLOC668153, EG668155, LOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011K12.bB6Ng01-011K12.g
ACCDH846978DH846979
length1,142879
definitionDH846978|Mus musculus domesticus DNA, BAC clone: B6Ng01-011K12, 5' end.DH846979|Mus musculus domesticus DNA, BAC clone: B6Ng01-011K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,250,204 - 76,251,358)(76,132,363 - 76,133,241)
sequence
gaattcagatcttcagaacacatataattgctaggaatcaatattgaccc
atctataatccaggctcagaaagcagatacaagaggtaaaaacatgacag
atgactaagaaaagagataaaagggtactgagaaaccagctggaagtaaa
gaaaaaatctggggattgtcttcttgtagtatctatcttctttaaacatt
tttatagcaactttgaactctagaccattggactagtatcaggaagaaat
acatttttaattttatttccgaccagtacatttcctgcttatgcataaat
tgtacttctcacatgaatattccattcttgtttataatgcctgcatgttt
gctatttccttgatcatactcactttatcactttaaaatgcgaagataag
ctaaagggaaagcagcaccaagcgtttctcctaagtgatagtaatctagt
ctagtaataagcatgatgacacaaagaatgatgtggaaaatatcatatga
tatggaaggaagggtagaagatgaataaaaccgtgagtttaaaagcagtt
ttgcagaaagattttcaaacaaaatcctaacaaaaagttagatgaatttt
taagatttatttttatttttattttggtatatacatgtgtatatacatgt
atatacatctataggtggatgattgaagaggtcaaaatagtgctttctat
cccctgaaactgaagttgccagccattgtgagcttatttggtcacctacc
ctggatatctcctggtggactgtgtaaaatacacatgggaaactttgtat
tatctgatctccacaatctgttctcttccaatcctcactttttgagtaat
gtgcaataactaatccagagaagagtaagcccaagttgaaatgagcctgg
tgaaaatctcacaacttggggaaaataatcatcaactttcttaagacatt
tcaaaagttctaaaagaggcttctgaatccccaaaaagcacccatatgcc
cctgacatctgtgagtagaagatgcatcacattaaaatggttaatgacat
aaaatcacagaagttgcacagaagtaagtcatttaagcacatctgatctt
ttgctgaacgactaacgattgctatgaatgcaccagaaagag
gaattctgggaatatggtggctgttgtcttggcaacaggtgtgtaagtca
cactgttcctatgtgatgtcacaggcttcagaagtcctgatgccaacagg
tttggtcttttcatcgtgtcccaaatttactggaagtttttggttaggaa
gttttggtacttggcattttctttaaccgatgtatcagtatcttctgtgg
tgtcttctataccagagattctctcttccatcacttgtactctgttattg
attcttttgtctgtggttgctgttttctaggtgttacatctgcggggttg
gctccatttgtgatctttttaattgtttctatttctatttatgggtcttg
ggctgttttgtccaattccttcacctgtttgattatattttcctatattt
ctttatgggctttattggtttcctctgcaatgtctccttcctgtttgctt
ttgtttttctgtattttgttaagggaattatatcctctgtaaaggcctct
atcatcttcatgagatgggatataaggtcagaatcttcgtctccatatgt
ctttggatatccagagctttctatagtatggtatctggtttctggtggtt
gcattggtttctgttgattatgttcttacacttgcctttttccatctggt
tttcacaaatgtcaactcatctaagtgtttttggattgaggcagacttcc
taggagtcaagtgaagctgtgtgtcctgggttagagaagatgtcctgtta
ggtaatgatgtctcttgttaaagcagggctcctgagtcactcattagagc
aattctgttggacaacagtcagggatgtggtgtggggggaaaggcatgct
aatgagatcctggtgcaggtgggtggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76250204_76251358
seq2: B6Ng01-011K12.b_46_1187 (reverse)

seq1  CTCTCTTCTGGGTGCATGTCATAAGCAATCCGTTAGTCTGTCAGCAAAAA  50
      |||| |||| ||||||| |||| |||||| ||||||||  ||||| ||||
seq2  CTCT-TTCT-GGTGCAT-TCAT-AGCAAT-CGTTAGTCGTTCAGC-AAAA  44

seq1  GATCAAGATGTGCTTAAAATGACTTAC-TCTGTGCAAACTCTGTTGATTT  99
      |||| |||||||||| ||||||||||| |||||||||  |||| ||| ||
seq2  GATC-AGATGTGCTT-AAATGACTTACTTCTGTGCAACTTCTG-TGA-TT  90

seq1  TTATGTCAATTAAACCATTTTTAATGTGATGCATCTTCTACTCACAGATG  149
      ||||||||  | ||||| ||||||||||||||||||||||||||||||||
seq2  TTATGTCA--TTAACCA-TTTTAATGTGATGCATCTTCTACTCACAGATG  137

seq1  TCAGGGGGCATATGGGTGCTTTTTGGGGATTCAGAAGCCTCTTTTTAGAA  199
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCA-GGGGCATATGGGTGCTTTTTGGGGATTCAGAAGCCTC-TTTTAGAA  185

seq1  CTTTTGAAATGTCTTAAGAAAGTTGATGATTATTTT-CCCAAGTTGTGAG  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTTGAAATGTCTTAAGAAAGTTGATGATTATTTTCCCCAAGTTGTGAG  235

seq1  ATTTTCACCAGGCTCATTTCAACTTGGGCTTACTCTTCTCTGGATTAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACCAGGCTCATTTCAACTTGGGCTTACTCTTCTCTGGATTAGTT  285

seq1  ATTGCACATTACTCAAAAAGTGAGGATTGGAAGAGAACAGATTGTGGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACATTACTCAAAAAGTGAGGATTGGAAGAGAACAGATTGTGGAGA  335

seq1  TCAGATAATACAAAGTTTCCCATGTGTATTTTACACAGTCCACCAGGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAATACAAAGTTTCCCATGTGTATTTTACACAGTCCACCAGGAGA  385

seq1  TATCCAGGGTAGGTGACCAAATAAGCTCACAATGGCTGGCAACTTCAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGGTAGGTGACCAAATAAGCTCACAATGGCTGGCAACTTCAGTT  435

seq1  TCAGGGGATAGAAAGCACTATTTTGACCTCTTCAATCATCCACCTATAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGATAGAAAGCACTATTTTGACCTCTTCAATCATCCACCTATAGA  485

seq1  TGTATATACATGTATATACACATGTATATACCAAAATAAAAATAAAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACATGTATATACACATGTATATACCAAAATAAAAATAAAAATA  535

seq1  AATCTTAAAAATTCATCTAACTTTTTGTTAGGATTTTGTTTGAAAATCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAAATTCATCTAACTTTTTGTTAGGATTTTGTTTGAAAATCTT  585

seq1  TCTGCAAAACTGCTTTTAAACTCACGGTTTTATTCATCTTCTACCCTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAACTGCTTTTAAACTCACGGTTTTATTCATCTTCTACCCTTCC  635

seq1  TTCCATATCATATGATATTTTCCACATCATTCTTTGTGTCATCATGCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATCATATGATATTTTCCACATCATTCTTTGTGTCATCATGCTTA  685

seq1  TTACTAGACTAGATTACTATCACTTAGGAGAAACGCTTGGTGCTGCTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGACTAGATTACTATCACTTAGGAGAAACGCTTGGTGCTGCTTTC  735

seq1  CCTTTAGCTTATCTTCGCATTTTAAAGTGATAAAGTGAGTATGATCAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTTATCTTCGCATTTTAAAGTGATAAAGTGAGTATGATCAAGG  785

seq1  AAATAGCAAACATGCAGGCATTATAAACAAGAATGGAATATTCATGTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAAACATGCAGGCATTATAAACAAGAATGGAATATTCATGTGAG  835

seq1  AAGTACAATTTATGCATAAGCAGGAAATGTACTGGTCGGAAATAAAATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATTTATGCATAAGCAGGAAATGTACTGGTCGGAAATAAAATTA  885

seq1  AAAATGTATTTCTTCCTGATACTAGTCCAATGGTCTAGAGTTCAAAGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATTTCTTCCTGATACTAGTCCAATGGTCTAGAGTTCAAAGTTG  935

seq1  CTATAAAAATGTTTAAAGAAGATAGATACTACAAGAAGACAATCCCCAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAATGTTTAAAGAAGATAGATACTACAAGAAGACAATCCCCAGA  985

seq1  TTTTTTCTTTACTTCCAGCTGGTTTCTCAGTACCCTTTTATCTCTTTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTACTTCCAGCTGGTTTCTCAGTACCCTTTTATCTCTTTTCT  1035

seq1  TAGTCATCTGTCATGTTTTTACCTCTTGTATCTGCTTTCTGAGCCTGGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTGTCATGTTTTTACCTCTTGTATCTGCTTTCTGAGCCTGGAT  1085

seq1  TATAGATGGGTCAATATTGATTCCTAGCAATTATATGTGTTCTGAAGATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGGGTCAATATTGATTCCTAGCAATTATATGTGTTCTGAAGATC  1135

seq1  TGAATTC  1155
      |||||||
seq2  TGAATTC  1142

seq1: chr6_76132363_76133241
seq2: B6Ng01-011K12.g_66_944

seq1  GAATTCTGGGAATATGGTGGCTGTTGTCTTGGCAACAGGTGTGTAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAATATGGTGGCTGTTGTCTTGGCAACAGGTGTGTAAGTCA  50

seq1  CACTGTTCCTATGTGATGTCACAGGCTTCAGAAGTCCTGATGCCAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCCTATGTGATGTCACAGGCTTCAGAAGTCCTGATGCCAACAGG  100

seq1  TTTGGTCTTTTCATCGTGTCCCAAATTTACTGGAAGTTTTTGGTTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTTTCATCGTGTCCCAAATTTACTGGAAGTTTTTGGTTAGGAA  150

seq1  GTTTTGGTACTTGGCATTTTCTTTAACCGATGTATCAGTATCTTCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTACTTGGCATTTTCTTTAACCGATGTATCAGTATCTTCTGTGG  200

seq1  TGTCTTCTATACCAGAGATTCTCTCTTCCATCACTTGTACTCTGTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTATACCAGAGATTCTCTCTTCCATCACTTGTACTCTGTTATTG  250

seq1  ATTCTTTTGTCTGTGGTTGCTGTTTTCTAGGTGTTACATCTGCGGGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGTCTGTGGTTGCTGTTTTCTAGGTGTTACATCTGCGGGGTTG  300

seq1  GCTCCATTTGTGATCTTTTTAATTGTTTCTATTTCTATTTATGGGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTTGTGATCTTTTTAATTGTTTCTATTTCTATTTATGGGTCTTG  350

seq1  GGCTGTTTTGTCCAATTCCTTCACCTGTTTGATTATATTTTCCTATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTGTCCAATTCCTTCACCTGTTTGATTATATTTTCCTATATTT  400

seq1  CTTTATGGGCTTTATTGGTTTCCTCTGCAATGTCTCCTTCCTGTTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGGCTTTATTGGTTTCCTCTGCAATGTCTCCTTCCTGTTTGCTT  450

seq1  TTGTTTTTCTGTATTTTGTTAAGGGAATTATATCCTCTGTAAAGGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTGTATTTTGTTAAGGGAATTATATCCTCTGTAAAGGCCTCT  500

seq1  ATCATCTTCATGAGATGGGATATAAGGTCAGAATCTTCGTCTCCATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTCATGAGATGGGATATAAGGTCAGAATCTTCGTCTCCATATGT  550

seq1  CTTTGGATATCCAGAGCTTTCTATAGTATGGTATCTGGTTTCTGGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATATCCAGAGCTTTCTATAGTATGGTATCTGGTTTCTGGTGGTT  600

seq1  GCATTGGTTTCTGTTGATTATGTTCTTACACTTGCCTTTTTCCATCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTTTCTGTTGATTATGTTCTTACACTTGCCTTTTTCCATCTGGT  650

seq1  TTTCACAAATGTCAACTCATCTAAGTGTTTTTGGATTGAGGCAGACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAATGTCAACTCATCTAAGTGTTTTTGGATTGAGGCAGACTTCC  700

seq1  TAGGAGTCAAGTGAAGCTGTGTGTCCTGGGTTAGAGAAGATGTCCTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCAAGTGAAGCTGTGTGTCCTGGGTTAGAGAAGATGTCCTGTTA  750

seq1  GGTAATGATGTCTCTTGTTAAAGCAGGGCTCCTGAGTCACTCATTAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGATGTCTCTTGTTAAAGCAGGGCTCCTGAGTCACTCATTAGAGC  800

seq1  AATTCTGTTGGACAACAGTCAGGGATGTGGTGTGGGGGGAAAGGCATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTGGACAACAGTCAGGGATGTGGTGTGGGGGGAAAGGCATGCT  850

seq1  AATGAGATACTGGTGCAGGTGGGTGGAGA  879
      |||||||| ||||||||||||||||||||
seq2  AATGAGATCCTGGTGCAGGTGGGTGGAGA  879