BAC Information

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BAC

Clone NameB6Ng01-013D23
Chromosome6 (Build37)
Map Location 111,552,886 - 111,688,158
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013D23.bB6Ng01-013D23.g
ACCDH848116DH848117
length965944
definitionDH848116|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D23, 5' end.DH848117|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,552,886 - 111,553,847)(111,687,215 - 111,688,158)
sequence
gaattccacgttgcagaagaaaaggcaagacattaagaagagaacattct
agaagagaaacattaatttgttctagtctttattctttttgcttccaaca
taatatttttaccaattgtttgagaaatttacatcatgggccccaatcac
atttacttcccaatccttccaggttttcctcccacccttgtgacctctcc
caaaaataaatgataaagaaacaaacaaacccaaacccataagtctaatt
tgtattgcccatatactcaaactaccagtggtcagctgcttatagaaaac
tgagtccttctcaacccacaacttggccagaaacccatcaattgaggaga
gctatacttcagcatcttgatcaccatcctgagcaaggccaatctcatct
gatctcagaagctaagtagaattgggcctggttagtacttggatgagagt
aaggacccttaaaagatgtaatagagatatttacccttgaacaggtaaca
ctttcctgcaaggagttagaaaaacttcctgaaagagaggaaatgtattg
gaggcactgtggtggaaagggttgaattatgaggaaacccgggggtgtac
tttcagagagatgtggcaactcttcttcagtgtcagcttgcaagctacag
tgttcatctaggaacgcatctataaacatgtctgtggagatatctccaga
aggtttaattgaggagggaagatctgaatgtgggtggcataatcctatgg
actgggatccttgacagaagaaaatgggaagaggaaaatgtaagctgagc
agcgctttcatttctctcgggccctctattactgatgcaactaaaggtat
ttgccgcagagtttgactgtcatggttttcaaccataatggactgtgctc
taattgtgagccaatataaatccctttctcctttacattgttttataagg
tccctccctattcta
gaattcctactatgtcccagctcttaaaggttctactgcctcaaaatagt
tcttacctggagaacacttacctaaaccatgatatgtcatatagggttgg
caatacctaacatattggttcacagggaggcaagactgacctggaatatg
tctcctcatcactacccaagtctttactaaacaatattatttaccatatg
tgtctagcctgaaataagcattacatggtcatgaagtatgtttctccttt
tattagggaagtgccatttttctgattgttcatgagaggtgtggtgactt
atattcccacattggtctttcctggatgtgaaagaaatggccttctttag
gaagttggggatgaattgaaatgaaatttctgttagtactggattctgtt
gtagacataatctcagaagaaataccacttaagtgagcagccacaatgcc
aattggcatgtgattgtcattgttccaagtttcctgatatattattgcca
attaactgaccttataatgtcctgctgttctcggaatcaaaccattgttg
tcttcatgatatcagttgtgtctatttaggagtagatgtcaaaatcaggc
catgaactgtaattattccctccccaaaagagggtctggggaggatagtt
ggccccctcaactgagaaactcccactcctctaagtcatttgtataaaac
cctgtcctaatgccatgtgaccttagggtctcaggtgaagaagatcatgc
tgagtgaagtcttcccatgtgtctgattttgtgtcaaattcatttctact
agtcattcttttacctatactctgtaagaaaggtcaacaaacctattggt
tttcccagggtgagtggttggtggaatgttcattagttcattgtgggact
ggatgaagaggaagtgtcttcacttcggtcttccctaggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111552886_111553847
seq2: B6Ng01-013D23.b_46_1007

seq1  GAATTCCACGTTGCAGAAGAAAAGGCAAGACATTAAGAAGAGAACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTTGCAGAAGAAAAGGCAAGACATTAAGAAGAGAACATTCT  50

seq1  AGAAGAGAAACATTAATTTGTTCTAGTCTTTATTCTTTTTGCTTCCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAACATTAATTTGTTCTAGTCTTTATTCTTTTTGCTTCCAACA  100

seq1  TAATATTTTTACCAATTGTTTGAGAAATTTACATCATGGGCCCCAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTTACCAATTGTTTGAGAAATTTACATCATGGGCCCCAATCAC  150

seq1  ATTTACTTCCCAATCCTTCCAGGTTTTCCTCCCACCCTTGTGACCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTCCCAATCCTTCCAGGTTTTCCTCCCACCCTTGTGACCTCTCC  200

seq1  CAAAAATAAATGATAAAGAAACAAACAAACCCAAACCCATAAGTCTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAATGATAAAGAAACAAACAAACCCAAACCCATAAGTCTAATT  250

seq1  TGTATTGCCCATATACTCAAACTACCAGTGGTCAGCTGCTTATAGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCCCATATACTCAAACTACCAGTGGTCAGCTGCTTATAGAAAAC  300

seq1  TGAGTCCTTCTCAACCCACAACTTGGCCAGAAACCCATCAATTGAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTTCTCAACCCACAACTTGGCCAGAAACCCATCAATTGAGGAGA  350

seq1  GCTATACTTCAGCATCTTGATCACCATCCTGAGCAAGGCCAATCTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTTCAGCATCTTGATCACCATCCTGAGCAAGGCCAATCTCATCT  400

seq1  GATCTCAGAAGCTAAGTAGAATTGGGCCTGGTTAGTACTTGGATGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGAAGCTAAGTAGAATTGGGCCTGGTTAGTACTTGGATGAGAGT  450

seq1  AAGGACCCTTAAAAGATGTAATAGAGATATTTACCCTTGAACAGGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCTTAAAAGATGTAATAGAGATATTTACCCTTGAACAGGTAACA  500

seq1  CTTTCCTGCAAGGAGTTAGAAAAACTTCCTGAAAGAGAGGAAATGTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCAAGGAGTTAGAAAAACTTCCTGAAAGAGAGGAAATGTATTG  550

seq1  GAGGCACTGTGGTGGAAAGGGTTGAATTATGAGGAAACCCGGGGGTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTGTGGTGGAAAGGGTTGAATTATGAGGAAACCCGGGGGTGTAC  600

seq1  TTTCAGAGAGATGTGGCAACTCTTCTTCAGTGTCAGCTTGCAAGCTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGAGATGTGGCAACTCTTCTTCAGTGTCAGCTTGCAAGCTACAG  650

seq1  TGTTCATCTAGGAACGCATCTATAAACATGTCTGTGGAGATATCTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCTAGGAACGCATCTATAAACATGTCTGTGGAGATATCTCCAGA  700

seq1  AGGTTTAATTGAGGAGGGAAGATCTGAATGTGGGTGGCATAATCCTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAATTGAGGAGGGAAGATCTGAATGTGGGTGGCATAATCCTATGG  750

seq1  ACTGGGATCCTTGACAGAAGAAAATGGGAAGAGGAAAATGTAAGCTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATCCTTGACAGAAGAAAATGGGAAGAGGAAAATGTAAGCTGAGC  800

seq1  AGCGCTTTCATTTCTCTC-GGCCCTCTAATTACTGATGCAACTAAA-GTA  848
      |||||||||||||||||| |||||||| |||||||||||||||||| |||
seq2  AGCGCTTTCATTTCTCTCGGGCCCTCT-ATTACTGATGCAACTAAAGGTA  849

seq1  TTTGCCGCAGAGTTTGACTGTCATGGTTTTTCAACCATAATGGACTGTGC  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGCCGCAGAGTTTGACTGTCATGG-TTTTCAACCATAATGGACTGTGC  898

seq1  TCTAAATTGTGAGCC-ATATAAAT-CCTTTCTCTTTTACATTGTTTTATT  946
      ||| ||||||||||| |||||||| |||||||| |||||||||||||| |
seq2  TCT-AATTGTGAGCCAATATAAATCCCTTTCTCCTTTACATTGTTTTA-T  946

seq1  AAGGTCCCTCCCTATT  962
      ||||||||||||||||
seq2  AAGGTCCCTCCCTATT  962

seq1: chr6_111687215_111688158
seq2: B6Ng01-013D23.g_63_1006 (reverse)

seq1  TCCTTCCTGGGGAAGACCTGAGTGATGACTACTTCCTCTTCATCCAGTCC  50
      |||||||| |||||||||  ||||| ||| |||||||||||||||||| |
seq2  TCCTTCCTAGGGAAGACCGAAGTGAAGAC-ACTTCCTCTTCATCCAGT-C  48

seq1  CCACAGTGAACTAATGAACATTTCCACC-ACCACTCACCCTGGG-AAACC  98
      ||||| |||||||||||||| ||||||| ||||||||||||||| |||||
seq2  CCACAATGAACTAATGAACA-TTCCACCAACCACTCACCCTGGGAAAACC  97

seq1  AATAGGTTTGTTGACCTTTCTTACAGAGTATAGGT-AAAGAATGACTAGT  147
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATAGGTTTGTTGACCTTTCTTACAGAGTATAGGTAAAAGAATGACTAGT  147

seq1  AGGAATGAATTTGACACAAAATCAGACACATGGGAAGACTTCACTCAGCA  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAATTTGACACAAAATCAGACACATGGGAAGACTTCACTCAGCA  197

seq1  TGATCTTCTTCACCTGAGACCCTAAGGTCACATGGCATTAGGACAGGGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCTTCACCTGAGACCCTAAGGTCACATGGCATTAGGACAGGGTT  247

seq1  TTATACAAATGACTTAGAGGAGTGGGAGTTTCTCAGTTGAGGGGGCCAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAATGACTTAGAGGAGTGGGAGTTTCTCAGTTGAGGGGGCCAAC  297

seq1  TATCCTCCCCAGACCCTCTTTTGGGGAGGGAATAATTACAGTTCATGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCCCCAGACCCTCTTTTGGGGAGGGAATAATTACAGTTCATGGCC  347

seq1  TGATTTTGACATCTACTCCTAAATAGACACAACTGATATCATGAAGACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGACATCTACTCCTAAATAGACACAACTGATATCATGAAGACAA  397

seq1  CAATGGTTTGATTCCGAGAACAGCAGGACATTATAAGGTCAGTTAATTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTTGATTCCGAGAACAGCAGGACATTATAAGGTCAGTTAATTGG  447

seq1  CAATAATATATCAGGAAACTTGGAACAATGACAATCACATGCCAATTGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATATCAGGAAACTTGGAACAATGACAATCACATGCCAATTGGC  497

seq1  ATTGTGGCTGCTCACTTAAGTGGTATTTCTTCTGAGATTATGTCTACAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCTGCTCACTTAAGTGGTATTTCTTCTGAGATTATGTCTACAAC  547

seq1  AGAATCCAGTACTAACAGAAATTTCATTTCAATTCATCCCCAACTTCCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAGTACTAACAGAAATTTCATTTCAATTCATCCCCAACTTCCTA  597

seq1  AAGAAGGCCATTTCTTTCACATCCAGGAAAGACCAATGTGGGAATATAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCCATTTCTTTCACATCCAGGAAAGACCAATGTGGGAATATAAG  647

seq1  TCACCACACCTCTCATGAACAATCAGAAAAATGGCACTTCCCTAATAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACACCTCTCATGAACAATCAGAAAAATGGCACTTCCCTAATAAAA  697

seq1  GGAGAAACATACTTCATGACCATGTAATGCTTATTTCAGGCTAGACACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACATACTTCATGACCATGTAATGCTTATTTCAGGCTAGACACAT  747

seq1  ATGGTAAATAATATTGTTTAGTAAAGACTTGGGTAGTGATGAGGAGACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAATAATATTGTTTAGTAAAGACTTGGGTAGTGATGAGGAGACAT  797

seq1  ATTCCAGGTCAGTCTTGCCTCCCTGTGAACCAATATGTTAGGTATTGCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGTCAGTCTTGCCTCCCTGTGAACCAATATGTTAGGTATTGCCA  847

seq1  ACCCTATATGACATATCATGGTTTAGGTAAGTGTTCTCCAGGTAAGAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATATGACATATCATGGTTTAGGTAAGTGTTCTCCAGGTAAGAACT  897

seq1  ATTTTGAGGCAGTAGAACCTTTAAGAGCTGGGACATAGTAGGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGGCAGTAGAACCTTTAAGAGCTGGGACATAGTAGGAATTC  944