BAC Information

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BAC

Clone NameB6Ng01-014N07
Chromosome6 (Build37)
Map Location 20,804,092 - 20,922,488
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014N07.bB6Ng01-014N07.g
ACCDH849263DH849264
length3901,137
definitionDH849263|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N07, 5' end.DH849264|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,804,092 - 20,804,486)(20,921,330 - 20,922,488)
sequence
tttaaacaaattgttgatatgaatccgcacaagttgtttgactctcatgt
catgttttctctttgtcaggaagcagtcctacttctttagtaacattgca
tttaaattcctagtaccaacagtaaatatagattccctcaaatatattag
tacccaattgggactatatgaggatatttaagaattcctatcttcctaaa
atattatttaatcttattatatttttatatttataaatatatgttaaaat
tttaaattacctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgcatgtgcatgatggtgttaatgtgtacaggcatgagatttg
ctatattgtattttttcagttctccttcaacattttacta
gaattcttctgttggaagaatataaacaatttgtgatggagtttgcatat
ttgctataatccatggttcacagtggagaattaagattaaagaaatacta
ttcaagatatgaaagtgctggcttcttcatttatatttatgaaccaattg
tacttttcaaaatattaaagtgacttgtctattctttctccttaaaatgc
ttttcagtcttcttagacctactgatatttaaatgaaatgtccataattt
aactagatggtgatttagatctgtgatgttggaatgataatctttcattg
atgatggctgacttaatgaataagaggtaaccatagaaatatatgcttaa
tagtaaatgtagcattcaccagcaaacgtctaagggatgccatacaaaaa
taatgtgttagaaatgacacttccctagggcattgcataacaatatactg
aaaagttcacagtattcattgcagcaattaccataatgattgtgccttta
aatgtgtctccacttgtaaatctttgggcaattagctttaataatgccag
catattttcacctattaaacatctccagatttttttttctaaactcataa
aattcacatgccttacagtgaaaagaaatcaacacattaaactacaaagg
ctagtaacaaagacaatccaagagagatgtaaattaccgagagaataaaa
ctatttctataactttattttattttatacttatttatcatagcgtacct
tacgctatgttgatattctgtgatatgaataaaaatcatgttgaaaggta
tttcaaaagacaaagaaaaatatcacttaggcctattctttaactgcttc
tatatattgttctatctttcatctcttgtttaaaataatataatttattg
ccttttatttagcttagaaaggacttatgtgaagggagctctggttatga
tggagacaggccaaaggaacctgtactgaacatcagtcacccacatgttc
tctcttcatagtatccgtctatggagctgtctaagagaaaacagattttg
cacttcgaacctagtactaattaatgatgtatccaatactcgagagacct
gtgatggcgacatgccatctattctggttatgagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20804092_20804486
seq2: B6Ng01-014N07.b_46_440

seq1  GAATTCTTTAAACAAATTGTTGATATGAATCCGCACAAGTTGTTTGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAACAAATTGTTGATATGAATCCGCACAAGTTGTTTGACTC  50

seq1  TCATGTCATGTTTTCTCTTTGTCAGGAAGCAGTCCTACTTCTTTAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCATGTTTTCTCTTTGTCAGGAAGCAGTCCTACTTCTTTAGTAAC  100

seq1  ATTGCATTTAAATTCCTAGTACCAACAGTAAATATAGATTCCCTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTTAAATTCCTAGTACCAACAGTAAATATAGATTCCCTCAAATA  150

seq1  TATTAGTACCCAATTGGGACTATATGAGGATATTTAAGAATTCCTATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTACCCAATTGGGACTATATGAGGATATTTAAGAATTCCTATCTT  200

seq1  CCTAAAATATTATTTAATCTTATTATATTTTTATATTTATAAATATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATATTATTTAATCTTATTATATTTTTATATTTATAAATATATGT  250

seq1  TAAAATTTTAAATTACCTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTAAATTACCTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGCATGTGCATGTTGTTGTTCATGTGTACAGGCATGT  350
      ||||||||||||||||||||||||| || |||| ||||||||||||||| 
seq2  GTGTGTGTGTGTGTGCATGTGCATGATGGTGTTAATGTGTACAGGCATGA  350

seq1  GATTTGCTATATTGTATTTTTTCAGTTCTCCTTCAACATTTTACT  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTATATTGTATTTTTTCAGTTCTCCTTCAACATTTTACT  395

seq1: chr6_20921330_20922488
seq2: B6Ng01-014N07.g_68_1204 (reverse)

seq1  CATCT--TAACACAGAATAGATGGCATGCTGGCATATCACAAGTGTTTCT  48
      |||||  |||| ||||||||||||||||  | |  |||||| || | || 
seq2  CATCTCATAAC-CAGAATAGATGGCATGTCGCC--ATCACAGGTCTCTC-  46

seq1  TCTGAGTATATG-TGAATCATTAATATATTTAGTACTAGTTCTGAAGTGG  97
         ||||||  | |  ||||||||     |||||||||| |  |||||| 
seq2  ---GAGTATTGGATACATCATTAA-----TTAGTACTAGGTTCGAAGTG-  87

seq1  CAAAAATCTGTTTTCTCTTTAGACAGCTCAATAGGACGGATACTAATGAA  147
        ||||||||||||||| ||||||||||| ||| |||||||||| |||||
seq2  -CAAAATCTGTTTTCTC-TTAGACAGCTCCATA-GACGGATACT-ATGAA  133

seq1  GAGAGAACATGTGGGTTGACTTGATGTTCAGTACAGGTTCCTTTTGGCCT  197
      ||||||||||||||| |||| |||||||||||||||||||| ||||||| 
seq2  GAGAGAACATGTGGG-TGAC-TGATGTTCAGTACAGGTTCC-TTTGGCC-  179

seq1  TGTCTCCAATCATTAACCAGAGCTCCCTTCACATAAGTCCTTTCTAAGCT  247
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCTCC-ATCA-TAACCAGAGCTCCCTTCACATAAGTCCTTTCTAAGCT  227

seq1  AAAATAAAAGGCAATAAATTATATTATTTTTAAACAAGAGATGAAAGATA  297
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -AAATAAAAGGCAATAAATTATATTA-TTTTAAACAAGAGATGAAAGATA  275

seq1  GAACAATATATAGAAGCAGTTAAAGAATAGGCCTAAGTGATATTTTTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATATATAGAAGCAGTTAAAGAATAGGCCTAAGTGATATTTTTCTT  325

seq1  TGTCTTTTGAAATACCTTTCAACATGATTTTTATTCATATCACAGAATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGAAATACCTTTCAACATGATTTTTATTCATATCACAGAATAT  375

seq1  CAACATAGCGTAAGGTACGCTATGATAAATAAGTATAAAATAAAATAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAGCGTAAGGTACGCTATGATAAATAAGTATAAAATAAAATAAAG  425

seq1  TTATAGAAATAGTTTTATTCTCTCGGTAATTTACATCTCTCTTGGATTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAATAGTTTTATTCTCTCGGTAATTTACATCTCTCTTGGATTGT  475

seq1  CTTTGTTACTAGCCTTTGTAGTTTAATGTGTTGATTTCTTTTCACTGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTACTAGCCTTTGTAGTTTAATGTGTTGATTTCTTTTCACTGTAA  525

seq1  GGCATGTGAATTTTATGAGTTTAGAAAAAAAAATCTGGAGATGTTTAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGAATTTTATGAGTTTAGAAAAAAAAATCTGGAGATGTTTAATA  575

seq1  GGTGAAAATATGCTGGCATTATTAAAGCTAATTGCCCAAAGATTTACAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAATATGCTGGCATTATTAAAGCTAATTGCCCAAAGATTTACAAG  625

seq1  TGGAGACACATTTAAAGGCACAATCATTATGGTAATTGCTGCAATGAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACACATTTAAAGGCACAATCATTATGGTAATTGCTGCAATGAATA  675

seq1  CTGTGAACTTTTCAGTATATTGTTATGCAATGCCCTAGGGAAGTGTCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACTTTTCAGTATATTGTTATGCAATGCCCTAGGGAAGTGTCATT  725

seq1  TCTAACACATTATTTTTGTATGGCATCCCTTAGACGTTTGCTGGTGAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACATTATTTTTGTATGGCATCCCTTAGACGTTTGCTGGTGAATG  775

seq1  CTACATTTACTATTAAGCATATATTTCTATGGTTACCTCTTATTCATTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTACTATTAAGCATATATTTCTATGGTTACCTCTTATTCATTAA  825

seq1  GTCAGCCATCATCAATGAAAGATTATCATTCCAACATCACAGATCTAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCATCATCAATGAAAGATTATCATTCCAACATCACAGATCTAAAT  875

seq1  CACCATCTAGTTAAATTATGGACATTTCATTTAAATATCAGTAGGTCTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTAGTTAAATTATGGACATTTCATTTAAATATCAGTAGGTCTAA  925

seq1  GAAGACTGAAAAGCATTTTAAGGAGAAAGAATAGACAAGTCACTTTAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGAAAAGCATTTTAAGGAGAAAGAATAGACAAGTCACTTTAATA  975

seq1  TTTTGAAAAGTACAATTGGTTCATAAATATAAATGAAGAAGCCAGCACTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAGTACAATTGGTTCATAAATATAAATGAAGAAGCCAGCACTT  1025

seq1  TCATATCTTGAATAGTATTTCTTTAATCTTAATTCTCCACTGTGAACCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTGAATAGTATTTCTTTAATCTTAATTCTCCACTGTGAACCAT  1075

seq1  GGATTATAGCAAATATGCAAACTCCATCACAAATTGTTTATATTCTTCCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATAGCAAATATGCAAACTCCATCACAAATTGTTTATATTCTTCCA  1125

seq1  ACAGAAGAATTC  1159
      ||||||||||||
seq2  ACAGAAGAATTC  1137