BAC Information

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BAC

Clone NameB6Ng01-016G10
Chromosome6 (Build37)
Map Location 52,568,054 - 52,725,751
singlet/doubletdoublet
Overlap geneHibadh, Tax1bp1, Jazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841
Downstream geneLOC666259, LOC666516, D430007I03, Creb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016G10.bB6Ng01-016G10.g
ACCDH850372DH850373
length1,1231,055
definitionDH850372|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G10, 5' end.DH850373|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,568,054 - 52,569,176)(52,724,684 - 52,725,751)
sequence
gaattcacctgatgacagaaggaatggaccaactccacaaagtcatcctc
tgacctacacacgtcatacacacatactaataataaattttaatttttaa
ggtaactaaataccactacaaatctttatactgtaatcttacataactaa
ttcagtgtaacaagaagggctaataattaattattctttcacctacattc
aaaaatgacatgaagctgaacatgataatggatgtctgcaattctagttt
gggaggtagagacaggggaatcaaggccaccctggttaatacataagact
ctatcacaagtaaacaaaatagcaacaacaacaacatcaataacaaatag
tagtaagtttggaagataatttttatatcaaaaccaattataaaaaataa
aatctgaattaaattatattttacttttcatcttttaaaagttcaaactt
atatttaatataattggaataaaatcgctattgttgcctactgctacaaa
tgcatacttatgtttacatatatataagcagaaatacacacaagaacact
tctgcaattttggaaatgacagaaaatcacacccacaatcctaccaaacc
agcaatcctgctatccccacataccaaccatcccacacacccatttttgc
tattatctgatacaaaattaaattttaaaaatttcattagtgagtctttg
acgtctcacaaaatgtatcatgtaactttcgccatgttacatggtaaatt
agatttgcagattttccaacattaagccatctatacataaaggcaacaca
gaacttgcaatgttttattttctcttattatggttggatttgatctatga
attatgttctttaaaggttgaacttttatactcctgactgaaatccacct
agcattctcctgctgatttgatctgctttataagagagttgaaagatctt
tcatgggaatcaattgcaaagtccttccttattttctactgtctggaaac
attcacatgaaatctggaatctttgttttatgttttaataacagtcactt
gtaaagccacttgagcctcccgtaaatctggaaggccggatgggtttgtt
ttgtcctgtttgttgttgtttgt
gaattcactcaccttcactgtgcataggcccctgacatggtggataacct
cagaaccaagaaaagggtagtacctagagaagggggtaccaggctctctg
caccccagacaccctggcctgtcatggcaggatgttttgttggcggtggc
agctgtgtgggcagtggctttggtggtgtctgtccaaatccctcctgtgt
gcttcctgcctccctgacgcctccctcccctctgggcagcttccactctt
ctgctttggagggagctcaagagcagagccccaccccctaccccagctca
ctgcagcctcttccatggaaaactttccatggaaaaaaagcaagtctaag
tgctcagtgttcccctgtgatgagtcgctcttcacaggtgtctctgctga
gaccacagcagacagacagaccagcatgggctccactccactccacttct
tggggtattcccacaagaggcggggggctcccagatggatccagtttcct
ttgaagccctcatggagtgacaggaggtctgcagttaactcaggagcctt
cagtgtgctccttcaacccgtgttccacttgaaatgtgtcctgggcttag
atggtggctctttgcctggccttgcctagtgtgtgcagtgggcctgggtg
ctgtccggagctccacaagaactctttcctaacgtctcttaaaacctagg
aaatactaagctctaagagtaggggaacagagtcaaatcctgccaacaga
ctcttactctttagaaatatttgacactgaggaaatctcataaagtatct
ttgtgtatgaaaaggagacgtgtttgatactcatacattcaagtacagtg
ccttctctgatgtgagtagcgagcccgtcccacacagtccctcggtacct
tccacagaacggtgtgacacaagcacgtgacccatggcggagtggtgtgc
tctgactgcctggctcttagtgtgtgcgcttgtgaagcaggagcacacac
ctccagatgctctcctgtacggcgttctcctcttcttcctcacaactcct
cagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52568054_52569176
seq2: B6Ng01-016G10.b_32_1154

seq1  GAATTCACCTGATGACAGAAGGAATGGACCAACTCCACAAAGTCATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGATGACAGAAGGAATGGACCAACTCCACAAAGTCATCCTC  50

seq1  TGACCTACACACGTCATACACACATACTAATAATAAATTTTAATTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACACACGTCATACACACATACTAATAATAAATTTTAATTTTTAA  100

seq1  GGTAACTAAATACCACTACAAATCTTTATACTGTAATCTTACATAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTAAATACCACTACAAATCTTTATACTGTAATCTTACATAACTAA  150

seq1  TTCAGTGTAACAAGAAGGGCTAATAATTAATTATTCTTTCACCTACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTAACAAGAAGGGCTAATAATTAATTATTCTTTCACCTACATTC  200

seq1  AAAAATGACATGAAGCTGAACATGATAATGGATGTCTGCAATTCTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACATGAAGCTGAACATGATAATGGATGTCTGCAATTCTAGTTT  250

seq1  GGGAGGTAGAGACAGGGGAATCAAGGCCACCCTGGTTAATACATAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTAGAGACAGGGGAATCAAGGCCACCCTGGTTAATACATAAGACT  300

seq1  CTATCACAAGTAAACAAAATAGCAACAACAACAACATCAATAACAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAAGTAAACAAAATAGCAACAACAACAACATCAATAACAAATAG  350

seq1  TAGTAAGTTTGGAAGATAATTTTTATATCAAAACCAATTATAAAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTTGGAAGATAATTTTTATATCAAAACCAATTATAAAAAATAA  400

seq1  AATCTGAATTAAATTATATTTTACTTTTCATCTTTTAAAAGTTCAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAATTAAATTATATTTTACTTTTCATCTTTTAAAAGTTCAAACTT  450

seq1  ATATTTAATATAATTGGAATAAAATCGCTATTGTTGCCTACTGCTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATATAATTGGAATAAAATCGCTATTGTTGCCTACTGCTACAAA  500

seq1  TGCATACTTATGTTTACATATATATAAGCAGAAATACACACAAGAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTTATGTTTACATATATATAAGCAGAAATACACACAAGAACACT  550

seq1  TCTGCAATTTTGGAAATGACAGAAAATCACACCCACAATCCTACCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATTTTGGAAATGACAGAAAATCACACCCACAATCCTACCAAACC  600

seq1  AGCAATCCTGCTATCCCCACATACCAACCATCCCACACACCCATTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTGCTATCCCCACATACCAACCATCCCACACACCCATTTTTGC  650

seq1  TATTATCTGATACAAAATTAAATTTTAAAAATTTCATTAGTGAGTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTGATACAAAATTAAATTTTAAAAATTTCATTAGTGAGTCTTTG  700

seq1  ACGTCTCACAAAATGTATCATGTAACTTTCGCCATGTTACATGGTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCACAAAATGTATCATGTAACTTTCGCCATGTTACATGGTAAATT  750

seq1  AGATTTGCAGATTTTCCAACATTAAGCCATCTATACATAAAGGCAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCAGATTTTCCAACATTAAGCCATCTATACATAAAGGCAACACA  800

seq1  GAACTTGCAATGTTTTA-TTTCTCTTATTTATGGTTGGATTTGATCTATG  849
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  GAACTTGCAATGTTTTATTTTCTCTTA-TTATGGTTGGATTTGATCTATG  849

seq1  AATTATG-TCTTTAAAGGTTGAACTTTTATACTCCTGACTGAAATCCACC  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTCTTTAAAGGTTGAACTTTTATACTCCTGACTGAAATCCACC  899

seq1  TAGCATTCTCCCTGCTGATTTGATCTGCTTTAATAAGAGAGTTGAAAGAT  948
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TAGCATTCT-CCTGCTGATTTGATCTGCTTT-ATAAGAGAGTTGAAAGAT  947

seq1  CTTTCATGGGAATCAATTGCAAAGTCCTTCCTTATTTTCTACTGTCTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGGGAATCAATTGCAAAGTCCTTCCTTATTTTCTACTGTCTGGA  997

seq1  AACATTCACATGAAATCTGAAATCTTTGTTTTATGTTTTAATAACAGTCA  1048
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACATTCACATGAAATCTGGAATCTTTGTTTTATGTTTTAATAACAGTCA  1047

seq1  CTTGTAAAGCCACTTGAGCCTCGCGTATATCTTGAGAGGTCGGATGGGTT  1098
      |||||||||||||||||||||| |||| |||| || ||| ||||||||||
seq2  CTTGTAAAGCCACTTGAGCCTCCCGTAAATCTGGA-AGGCCGGATGGGTT  1096

seq1  TGTTTTGTCCTGTTTGT--TTGTTTGT  1123
      |||||||||||||||||  ||||||||
seq2  TGTTTTGTCCTGTTTGTTGTTGTTTGT  1123

seq1: chr6_52724684_52725751
seq2: B6Ng01-016G10.g_68_1122 (reverse)

seq1  TTCTGGGGGAGTTTGGTGAGGAAGGAGAGGAGAGCCGCGGTTACAGGGAG  50
      |||| | ||||||  ||||||||| |||||||| |  ||  |||| ||||
seq2  TTCT-GAGGAGTT--GTGAGGAAGAAGAGGAGAACGCCG--TACA-GGAG  44

seq1  AGCATCTGGAGGTGTGTGCCTCCTGCCTCCACAGCGCCAACACACTAAGA  100
      |||||||||||||||||| ||||||| ||   |||||  |||||||||||
seq2  AGCATCTGGAGGTGTGTG-CTCCTGCTTCACAAGCGC--ACACACTAAGA  91

seq1  GCCAGGCAGTCAGAAGCACACCACTCCGCCATGGGTCACGTGCTTGGTGT  150
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GCCAGGCAGTCAG-AGCACACCACTCCGCCATGGGTCACGTGCTT-GTGT  139

seq1  CCACACCGTTCTGTGGAAGGTACCGAGGGACTGTGGTGGGACGGGCTCGC  200
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -CACACCGTTCTGTGGAAGGTACCGAGGGACTGT-GTGGGACGGGCTCGC  187

seq1  TACTCACATCAGAGGAGGCACTGTACTTGAATGTATGAGTATCAAACACG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACTCACATCAGAGAAGGCACTGTACTTGAATGTATGAGTATCAAACACG  237

seq1  TCTCCTTTTCATACACAAAGATACTTTATGAGATTTCCTCAGTGTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTCATACACAAAGATACTTTATGAGATTTCCTCAGTGTCAAAT  287

seq1  ATTTCTAAAGAGTAAGAGTCTGTTGGCAGGATTTGACTCTGTTCCCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAAGAGTAAGAGTCTGTTGGCAGGATTTGACTCTGTTCCCCTAC  337

seq1  TCTTAGAGCTTAGTATTTCCTAGGTTTTAAGAGACGTTAGGAAAGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGCTTAGTATTTCCTAGGTTTTAAGAGACGTTAGGAAAGAGTTC  387

seq1  TTGTGGAGCTCCGGACAGCACCCAGGCCCACTGCACACACTAGGCAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGCTCCGGACAGCACCCAGGCCCACTGCACACACTAGGCAAGGC  437

seq1  CAGGCAAAGAGCCACCATCTAAGCCCAGGACACATTTCAAGTGGAACACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGAGCCACCATCTAAGCCCAGGACACATTTCAAGTGGAACACG  487

seq1  GGTTGAAGGAGCACACTGAAGGCTCCTGAGTTAACTGCAGACCTCCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGGAGCACACTGAAGGCTCCTGAGTTAACTGCAGACCTCCTGTC  537

seq1  ACTCCATGAGGGCTTCAAAGGAAACTGGATCCATCTGGGAGCCCCCCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGAGGGCTTCAAAGGAAACTGGATCCATCTGGGAGCCCCCCGCC  587

seq1  TCTTGTGGGAATACCCCAAGAAGTGGAGTGGAGTGGAGCCCATGCTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGGAATACCCCAAGAAGTGGAGTGGAGTGGAGCCCATGCTGGTC  637

seq1  TGTCTGTCTGCTGTGGTCTCAGCAGAGACACCTGTGAAGAGCGACTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGCTGTGGTCTCAGCAGAGACACCTGTGAAGAGCGACTCATC  687

seq1  ACAGGGGAACACTGAGCACTTAGACTTGCTTTTTTTCCATGGAAAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAACACTGAGCACTTAGACTTGCTTTTTTTCCATGGAAAGTTTT  737

seq1  CCATGGAAGAGGCTGCAGTGAGCTGGGGTAGGGGGTGGGGCTCTGCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGAGGCTGCAGTGAGCTGGGGTAGGGGGTGGGGCTCTGCTCTT  787

seq1  GAGCTCCCTCCAAAGCAGAAGAGTGGAAGCTGCCCAGAGGGGAGGGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCTCCAAAGCAGAAGAGTGGAAGCTGCCCAGAGGGGAGGGAGGC  837

seq1  GTCAGGGAGGCAGGAAGCACACAGGAGGGATTTGGACAGACACCACCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAGGCAGGAAGCACACAGGAGGGATTTGGACAGACACCACCAAA  887

seq1  GCCACTGCCCACACAGCTGCCACCGCCAACAAAACATCCTGCCATGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCCCACACAGCTGCCACCGCCAACAAAACATCCTGCCATGACAG  937

seq1  GCCAGGGTGTCTGGGGTGCAGAGAGCCTGGTACCCCCTTCTCTAGGTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGTGTCTGGGGTGCAGAGAGCCTGGTACCCCCTTCTCTAGGTACT  987

seq1  ACCCTTTTCTTGGTTCTGAGGTTATCCACCATGTCAGGGGCCTATGCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTCTTGGTTCTGAGGTTATCCACCATGTCAGGGGCCTATGCACA  1037

seq1  GTGAAGGTGAGTGAATTC  1068
      ||||||||||||||||||
seq2  GTGAAGGTGAGTGAATTC  1055