BAC Information

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BAC

Clone NameB6Ng01-016M04
Chromosome6 (Build37)
Map Location 147,980,944 - 148,159,091
singlet/doubletdoublet
Overlap geneMlstd1, Ergic2
Upstream gene2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
Downstream geneTmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016M04.bB6Ng01-016M04.g
ACCDH850632DH850633
length1,178881
definitionDH850632|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M04, 5' end.DH850633|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,980,944 - 147,982,129)(148,158,211 - 148,159,091)
sequence
gaattccctttctcaatcacataggttctaatagaaatcttatccattta
ggttgtagtaaaaatggtttatcctgaaagtagatcttgctaagagcaga
ttggtttccttttactcccctgctggaagcacatctccacagggaaaacc
tgacagtgcccctagaaggaagccagagaaatgctgaatccccctgacag
gggtcctagagttcactctgcttcttcattattgagctccagcaattgac
cacctatatatagctcaggtttttctactctaacacttaatgatggagct
ttctgctctgtttgtgtgagtctccatgtttgtctatccagttttgaagg
ccataggctgtcttgtgatctcctccgctgacagatataaactaagaagt
attgttagttttcccatttgtacagctatatacttactgctcaaatggag
ttgtaaaagtttatgaatgaagtttctcattgagagatatgtgacctttt
atcttcctctctgtctgtcttctctggtgtctccctttctcacttcctat
atgtgtgcattagtttatgaacctggataatgagcaagtgatccagtatg
cattcttttatgtgcctctctatgttttgtagacttttttatctatttac
atacaataatccaagttatttgtcagaaatttaatagaaaggacttaata
ttacatgtgttttctacatactgtttcctaccaaattaaagttcttagac
cttagagcaatcaactgatataacttcattcattttaatgcatgtaatag
ttaatagataagatataactttagttaattaagatgtaaccacattgtag
cctcaatgtagatgttctaaatgttatcaatactaatcttgaaatatgct
gggtccctgccttagttacttttctattgtgaccaagcaacttatagagg
aaatagattattgggaacttataagtttctcagaggggtagagtccatga
ccatcatggagagacatgacattagcagcagaaagcatggttttggagta
gtagctgagaagaattgtatcctgatccaaatcattggactggacagtct
agtaagaatcttgttcttttaacccaggtaatgttaccgtggagtgtttt
gtttatcccaggggtgtgaataagagac
gaattctgagaagttgaagaccctcagatttgtcataacagctagtaaga
agtccccagcaagagagtttgctgattggtttgtgtttttccggtcacaa
agcttgtacagtatattacttgctgtcccaggaacttttttttttttaaa
tcattaagaaagttataagattagaccatttactgtaaactgggaggctt
aaaatagtggaagggccctgttttctcagaaggcctgggacatggtgctt
ctttggtgttctggcttctgagcaacccaggacaacaggtcactctactc
tctctgtatagcatctcccttgtatattgggtcttcacacagacttgaaa
ggacatccatcagtctttaatttgggatcgtcctaatccactatgatttc
aactaagtacgttttcaaagactttttttaaaaatatattttataaatag
aaggtgactcaaaacatttgtaatagaagataaattgttgttctctaaca
tctacatgagtgcaatggtacaggtgccccctccccaataaatttcatta
aataagtttcatttcaaaataaatcctttttgtttgtttgtttgcagaag
taatcaaactcaattttgaaaagcaggtgtgtgtggtgtcctcagttctg
tatcctgttttcttacgtatcttaaagcagttgttctaagtattgtctta
gctgctatcaccatatccttgaggttttacttttgtttaaatatacagga
cagttatgggagatagcaacaaccagatgtagtattggaaatcactgtgg
tgtaaactcagtgtctggcctgtagacagagcatcatgcagaaactccca
gtctgggttttatggaacaatgtggaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147980944_147982129
seq2: B6Ng01-016M04.b_45_1222

seq1  GAATTCCCTTTCTCAATCACATAGGTTCTAATAGAAATCTTATCCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCTCAATCACATAGGTTCTAATAGAAATCTTATCCATTTA  50

seq1  GGTTGTAGTAAAAATGGTTTATCCTGAAAGTAGATCTTGCTAAGAGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAGTAAAAATGGTTTATCCTGAAAGTAGATCTTGCTAAGAGCAGA  100

seq1  TTGGTTTCCTTTTACTCCCCTGCTGGAAGCACATCTCCACAGGGAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCTTTTACTCCCCTGCTGGAAGCACATCTCCACAGGGAAAACC  150

seq1  TGACAGTGCCCCTAGAAGGAAGCCAGAGAAATGCTGAATCCCCCTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGCCCCTAGAAGGAAGCCAGAGAAATGCTGAATCCCCCTGACAG  200

seq1  GGGTCCTAGAGTTCACTCTGCTTCTTCATTATTGAGCTCCAGCAATTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTAGAGTTCACTCTGCTTCTTCATTATTGAGCTCCAGCAATTGAC  250

seq1  CACCTATATATAGCTCAGGTTTTTCTACTCTAACACTTAATGATGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATATATAGCTCAGGTTTTTCTACTCTAACACTTAATGATGGAGCT  300

seq1  TTCTGCTCTGTTTGTGTGAGTCTCCATGTTTGTCTATCCAGTTTTGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTGTTTGTGTGAGTCTCCATGTTTGTCTATCCAGTTTTGAAGG  350

seq1  CCATAGGCTGTCTTGTGATCTCCTCCGCTGACAGATATAAACTAAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGCTGTCTTGTGATCTCCTCCGCTGACAGATATAAACTAAGAAGT  400

seq1  ATTGTTAGTTTTCCCATTTGTACAGCTATATACTTACTGCTCAAATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGTTTTCCCATTTGTACAGCTATATACTTACTGCTCAAATGGAG  450

seq1  TTGTAAAAGTTTATGAATGAAGTTTCTCATTGAGAGATATGTGACCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAGTTTATGAATGAAGTTTCTCATTGAGAGATATGTGACCTTTT  500

seq1  ATCTTCCTCTCTGTCTGTCTTCTCTGGTGTCTCCCTTTCTCACTTCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTCTGTCTGTCTTCTCTGGTGTCTCCCTTTCTCACTTCCTAT  550

seq1  ATGTGTGCATTAGTTTATGAACCTGGATAATGAGCAAGTGATCCAGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCATTAGTTTATGAACCTGGATAATGAGCAAGTGATCCAGTATG  600

seq1  CATTCTTTTATGTGCCTCTCTATGTTTTGTAGACTTTTTTATCTATTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTATGTGCCTCTCTATGTTTTGTAGACTTTTTTATCTATTTAC  650

seq1  ATACAATAATCCAAGTTATTTGTCAGAAATTTAATAGAAAGGACTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAATCCAAGTTATTTGTCAGAAATTTAATAGAAAGGACTTAATA  700

seq1  TTACATGTGTTTTCTACATACTGTTTCCTACCAAATTAAAGTTCTTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTGTTTTCTACATACTGTTTCCTACCAAATTAAAGTTCTTAGAC  750

seq1  CTTAGAGCAATCAACTGATATAACTTCATTCATTTTAATGCATGTAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCAATCAACTGATATAACTTCATTCATTTTAATGCATGTAATAG  800

seq1  TTAATAGATAAGATATAACTTTAGTTAATTAAGATGTAACCACATTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGATAAGATATAACTTTAGTTAATTAAGATGTAACCACATTGTAG  850

seq1  CCTCAATGTAGATGTTCTAAATGTTATCAATACTAATCTTGAAATATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATGTAGATGTTCTAAATGTTATCAATACTAATCTTGAAATATGCT  900

seq1  GGGTCCCTGCCTTAGTTACTTTTCTATTGTGACCAAGGCAACTTATAGAG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGTCCCTGCCTTAGTTACTTTTCTATTGTGACCAA-GCAACTTATAGAG  949

seq1  GAAATAGATTATTGGGAACTTATAAGTTTCTCAGAGGGGTAGAGTCCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGATTATTGGGAACTTATAAGTTTCTCAGAGGGGTAGAGTCCATG  999

seq1  ACCATCATGGAGGAGAACATGACAATAGGCAGGCAGAAAGGCATGGTTTT  1050
      ||||||||||| ||| |||||||| || ||| ||||||| ||||||||||
seq2  ACCATCATGGA-GAG-ACATGACATTA-GCA-GCAGAAA-GCATGGTTTT  1044

seq1  GGAGTAGTAGCTGAGA--GATTGTATCCTGATCCACAATCATTGGACTGG  1098
      ||||||||||||||||   |||||||||||||||| ||||||||||||||
seq2  GGAGTAGTAGCTGAGAAGAATTGTATCCTGATCCA-AATCATTGGACTGG  1093

seq1  ACAGTCTAGTAAGAATCTTGGTTTCTTTTAAAACCCA-GTTATGTTA-CG  1146
      ||||||||||||||||||||  |||||||  |||||| || |||||| ||
seq2  ACAGTCTAGTAAGAATCTTG--TTCTTTT--AACCCAGGTAATGTTACCG  1139

seq1  TGGATGTTTTTGTTTTAATCCCAGGTGT-TGAATAAGAGAC  1186
      ||||   ||||||||  |||||||| || ||||||||||||
seq2  TGGAGTGTTTTGTTT--ATCCCAGGGGTGTGAATAAGAGAC  1178

seq1: chr6_148158211_148159091
seq2: B6Ng01-016M04.g_66_946 (reverse)

seq1  ACATTTCCACATTGTTCCATAAAACCCAGACTTGGGAGTTTCTGCATGAT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATTTCCACATTGTTCCATAAAACCCAGAC-TGGGAGTTTCTGCATGAT  49

seq1  GCTTCTGTCTACTGG-CAGACACTGTGTTTACACCACAGTGATTTCCAAT  99
      || ||||||||| || ||||||||| ||||||||||||||||||||||||
seq2  GC-TCTGTCTACAGGCCAGACACTGAGTTTACACCACAGTGATTTCCAAT  98

seq1  ACTACATCTGGTTTGTTTGCTATCTCCCATAACTGTCCTGTATATTTAAA  149
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  ACTACATCTGGTT--GTTGCTATCTCCCATAACTGTCCTGTATATTTAAA  146

seq1  CAAAAGTAAAACCTCAAGGATATGGTGATAGCAGCTAAGACAATACTTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAAAACCTCAAGGATATGGTGATAGCAGCTAAGACAATACTTAG  196

seq1  AACAACTGC-TTAAGATACGTAAG-AAACAGGATACAGAACTGAGGACAC  247
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AACAACTGCTTTAAGATACGTAAGAAAACAGGATACAGAACTGAGGACAC  246

seq1  CACACACACCTGCTTTTC-AAATTGAGTTTGATTACTTCTGCAAACAAAC  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACACACACCTGCTTTTCAAAATTGAGTTTGATTACTTCTGCAAACAAAC  296

seq1  AAACAAAAAGGATTTATTTTGAAATGAAACTTATTTAATGAAATTTATTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGGATTTATTTTGAAATGAAACTTATTTAATGAAATTTATTG  346

seq1  GGGAGGGGGCACCTGTACCATTGCACTCATGTAGATGTTAGAGAACAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGCACCTGTACCATTGCACTCATGTAGATGTTAGAGAACAACA  396

seq1  ATTTATCTTCTATTACAAATGTTTTGAGTCACCTTCTATTTATAAAATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTCTATTACAAATGTTTTGAGTCACCTTCTATTTATAAAATAT  446

seq1  ATTTTTAAAAAAAGTCTTTGAAAACGTACTTAGTTGAAATCATAGTGGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAAAAGTCTTTGAAAACGTACTTAGTTGAAATCATAGTGGAT  496

seq1  TAGGACGATCCCAAATTAAAGACTGATGGATGTCCTTTCAAGTCTGTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGATCCCAAATTAAAGACTGATGGATGTCCTTTCAAGTCTGTGTG  546

seq1  AAGACCCAATATACAAGGGAGATGCTATACAGAGAGAGTAGAGTGACCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAATATACAAGGGAGATGCTATACAGAGAGAGTAGAGTGACCTG  596

seq1  TTGTCCTGGGTTGCTCAGAAGCCAGAACACCAAAGAAGCACCATGTCCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGGTTGCTCAGAAGCCAGAACACCAAAGAAGCACCATGTCCCA  646

seq1  GGCCTTCTGAGAAAACAGGGCCCTTCCACTATTTTAAGCCTCCCAGTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTGAGAAAACAGGGCCCTTCCACTATTTTAAGCCTCCCAGTTTA  696

seq1  CAGTAAATGGTCTAATCTTATAACTTTCTTAATGATTTAAAAAAAAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATGGTCTAATCTTATAACTTTCTTAATGATTTAAAAAAAAAAAA  746

seq1  GTTCCTGGGACAGCAAGTAATATACTGTACAAGCTTTGTGACCGGAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGACAGCAAGTAATATACTGTACAAGCTTTGTGACCGGAAAAA  796

seq1  CACAAACCAATCAGCAAACTCTCTTGCTGGGGACTTCTTACTAGCTGTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCAATCAGCAAACTCTCTTGCTGGGGACTTCTTACTAGCTGTTA  846

seq1  TGACAAATCTGAGGGTCTTCAACTTCTCAGAATTC  881
      |||||||||||||||||||||||||||||||||||
seq2  TGACAAATCTGAGGGTCTTCAACTTCTCAGAATTC  881