BAC Information

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BAC

Clone NameB6Ng01-018D12
Chromosome6 (Build37)1 (Build37)
Map Location 104,741,266 - 104,741,78842,730,368 - 42,730,723
singlet/doubletsingletsinglet
Overlap geneCntn6
Upstream geneLOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018D12.bB6Ng01-018D12.g
ACCDH851683DH851684
length1,022356
definitionDH851683|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D12, 5' end.DH851684|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,741,266 - 104,741,788)(42,730,368 - 42,730,723)
sequence
gaattcaccttgtgccatgcacaaaaaactagctgagaatgaattgaaga
cataaagataagacttgaaactataaaactcttaaaacaaaccctagacg
tagacatcacaatgtccgggtttggcaataacttcatagctctaagccca
aagggaaagataactaactgggactaaacaaagcttgaaaacctttgtat
aactaggggaaaattatccaaataaaggacaaccttcaggataagagaaa
atattttcaaggcatatgtttcaaagtggggtggccaggacataacaaag
aactcccagggatcaacagcataagaccaaaaagtctatttttaaaatgg
agtagttatctgaataaagatttctccaaagaagatatacaaatggcaat
aatcactcaaaaaggaaccatcgttaattatgaccatcaaaaccataatg
agctatcacctgctacctgtacagaaggatattacaaaaacaacaagaaa
tgaagatctggccctagtggcatatgcttgagattccagatatttgggaa
actgaggtgggaagattataaattcatgaacttcctcatctacagagtga
gcttaagactaatctgggcaatgtacagtgatcctatctcaaagtaaaat
tcagaattagaaagatagtttactggtagaacacttacctagcatataca
cacacatacacacacacacacacacacacacacagagagagagagagaga
gagagagagagagagagagagagagagagaaacagagaagctgaaacacg
tgtccatggtttctatgaatctaatatcgcagtcataagtaacagggtgg
tgatagaattaaaacaaattaccacatgaccctgtgtcttagttaccttt
caattgaagtgacaagatgtgaaacaacttgtagaagagtatatggggct
tgaattacagttccagaggattagaatccatgacatttaacagggagcag
gacagcaggtaatcaggcatgg
tttctgacctctgaggttgaaataccatgtggaatctttcggaatctatc
aaaagcctggcatccgtgcacagccccagagcctctgaattcaaaacagg
accatttcctggctcagaactccagctccaaattccttaggctcagaact
gatgggaaaacagatcctctgagttcttctgatttggaaatcattcagac
tgacaacagataggaaattgacaaggagatttgaaatcttccacttacat
cgtccttatttgttctatgtggtagagaacatcacacccttaaccttgat
tttctcacttcttccagctgaaaacaaaacccacaatgtgagttacagtg
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104741266_104741788
seq2: B6Ng01-018D12.b_744_938

seq1  CACACATACACACACATACAGAGAGAGGGAATAGAGAGAGAAAACAGTCA  50
      |||||||||||||||| |||                            ||
seq2  CACACATACACACACACACA----------------------------CA  22

seq1  CACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  72

seq1  GAGAGAGACCCTACACAGTGGTTCTATTTGTTCTTTTGGTTTTTGTTTTG  150
      ||||||||    ||| ||  | |  |                       |
seq2  GAGAGAGA---AACAGAGAAGCTGAA-------------------ACACG  100

seq1  TTTTATTTGTTTGTTTGTTTAAGCTTAAATAGC-----TTAGCACCAAAT  195
      | |   | |||| | ||   || || | || ||     | || | | |  
seq2  TGTCCATGGTTTCTATG---AATCTAATATCGCAGTCATAAGTAAC-AGG  146

seq1  GTGGCAAATGCATTTTCGCATTTTTTTTCTCTTTGATGTGAACTGCTAGT  245
      ||||  |  | |||    ||                    || | | |  
seq2  GTGGTGATAGAATTAAAACA--------------------AATTACCA--  174

seq1  GAGAGTCAAGATCTTTTTTTTTAATTAGGTATTTATTTCATTTACATTTG  295
            || || | | | | ||| |||                       
seq2  ------CATGACCCTGTGTCTTAGTTA-----------------------  195

seq1  TTAAGTGTATAAAATATAGGTTATGTAAATGAAATTGTACTATTTCATAT  345
                                                        
seq2  --------------------------------------------------  195

seq1  CTATTTGGGCAGCATACACTTGGAGGCAAGAGTCAGAGAAACACAAGAGT  395
                                                        
seq2  --------------------------------------------------  195

seq1  CACTCCTCAGAAGATATATACACTTTATATATTTTTGGGTACATGATTTC  445
                                                        
seq2  --------------------------------------------------  195

seq1  TTAGTGGGGTGTGTGACCCAATGTGCTCACTATTTTTGCCAGAGAACCCC  495
                                                        
seq2  --------------------------------------------------  195

seq1  ATGGACCCTTCTGCCTGTGTCTTAGTTA  523
                                  
seq2  ----------------------------  195

seq1: chr1_42730368_42730723
seq2: B6Ng01-018D12.g_74_429

seq1  TTTCTGACCTCTGAGGTTGAAATACCATGTGGAATCTTTCGGAATCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACCTCTGAGGTTGAAATACCATGTGGAATCTTTCGGAATCTATC  50

seq1  AAAAGCCTGGCATCCGTGCACAGCCCCAGAGCCTCTGAATTCAAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTGGCATCCGTGCACAGCCCCAGAGCCTCTGAATTCAAAACAGG  100

seq1  ACCATTTCCTGGCTCAGAACTCCAGCTCCAAATTCCTTAGGCTCAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCTGGCTCAGAACTCCAGCTCCAAATTCCTTAGGCTCAGAACT  150

seq1  GATGGGAAAACAGATCCTCTGAGTTCTTCTGATTTGGAAATCATTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAAACAGATCCTCTGAGTTCTTCTGATTTGGAAATCATTCAGAC  200

seq1  TGACAACAGATAGGAAATTGACAAGGAGATTTGAAATCTTCCACTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAGATAGGAAATTGACAAGGAGATTTGAAATCTTCCACTTACAT  250

seq1  CGTCCTTATTTGTTCTATGTGGTAGAGAACATCACACCCTTAACCTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTATTTGTTCTATGTGGTAGAGAACATCACACCCTTAACCTTGAT  300

seq1  TTTCTCACTTCTTCCAGCTGAAAACAAAACCCACAATGTGAGTTACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACTTCTTCCAGCTGAAAACAAAACCCACAATGTGAGTTACAGTG  350

seq1  TGTGTG  356
      ||||||
seq2  TGTGTG  356