BAC Information

Click to search

BAC

Clone NameB6Ng01-018H19
Chromosome6 (Build37)
Map Location 83,173,035 - 83,362,618
singlet/doubletdoublet
Overlap geneC330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik
Upstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1
Downstream geneDguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H19.bB6Ng01-018H19.g
ACCDH851878DH851879
length8011,029
definitionDH851878|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H19, 5' end.DH851879|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,173,035 - 83,173,831)(83,361,590 - 83,362,618)
sequence
gaattcactgtggtgaccaggctagactcaaacacagagatctaccagcc
tctgctcctgagacctggaaggaaaggggtgtgccaccatgcccggctct
tgtcactccctttctattgcacaaaagtttttaaacatggcgggtgtggt
ggtaagcacaccaggtgttgtggtgactacctttaatctcagcacccaag
aggcaaggatgggagtatctgtgagttagagattagcttggtctacatag
tgaatgtcaggccagctagtgctacataatgagaccctgtatcaaaacaa
caacaaacaaacaaaaataagccttttgtaccagcagttcgtagttgatc
aattcaggtattcaaaacatttttaatgtcaagtttgatatttctattat
tttttaatggtagaactgtagttttagaaatcctaaggctaagaactctg
cgtagttcccaacacagacaatctgggtttgaatttctctttctctattt
tggcagtaattaaaattcttggtgcctcagttcggtatctgtataatggg
actagtatggttggaggtgaggttcagtggttgaatacttgtgtattaag
ataggcaaggctctgggttgcatcctcagcgaaagtaaattaatactaat
accaattactaatattaagtcataaatgggaagcattcaaaatgctacct
atttaatgacagccatttttcatctgtatttttattttttaaatttaaca
ttctattttattttgtgtatgtgtgttcaggtgaacatgaccaggtatgt
t
gaattcaccccatagagtccaccgcggagagatgggcatctgtagaggtt
gatggggcttgctcattctggctgccggcatcttggcaggtttctgctaa
tgtggtgtgtagctgacaagcagcaggccagccctgtagcttgttcctct
tgtaagtcagccttcagccaaggctgagaaaggatgaacagtagcgcttc
gctcccctcgtaccgctcgctcttctgaagcaagtccctttgcttcccat
tcggtacagtattgcagagctggtgtgtacttgattgctaacctggaaaa
acttaggaagctgggattgcgtccgaagctgtctctggtggtggtgactc
acttatctggagaatccacctgttcccagccttgcctcaaaaccagggct
tctggactcccttcgttagggtggcgggctgctgctgttgaacccctgta
gctgtctgggagacagtggcagagattagagagccccagaagggagttca
ctgtagagggtgaggcagtggggcaggatgcaaaatgacttcccaacaga
ggctcctgtggctctggggggacatagtggcacaaaggggagctctgagc
ttctggctctctcagctcctcagaaggagacaaaacttaggacattttct
gtatcttcctgttgtttacgacaagtctctgctgctcccgacaggggaca
caccctaacctgggtaagacctaacgggatccagagttgttgacattaca
ggttcaaagaagagacccaacaggagtgggagggcccaggagagctgggt
ggggcttgtacccagaaagggtggcaccaggaccttttgcatcctgttgt
agcagagacctcagaggttcctttgggggaggataagatagatgccattc
agccagccagctgtgctggagacagaggtacaggttcaagaggtagagta
cagagctttatcctttagcgctcaggtcacattcggctatgcatcccatg
gaaacaggctgtcctggtaataaaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83173035_83173831
seq2: B6Ng01-018H19.b_47_847

seq1  GAATTCACTGTGGTGACCAGGCTAGACTCAAACACAGAGATCTACCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGGTGACCAGGCTAGACTCAAACACAGAGATCTACCAGCC  50

seq1  TCTGCTCCTGAGACCTGGAAGGAAAGGGGTGTGCCACCATGCCCGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTGAGACCTGGAAGGAAAGGGGTGTGCCACCATGCCCGGCTCT  100

seq1  TGTCACTCCCTTTCTATTGCACAAAAGTTTTTAAACATGGCGGGTGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCCCTTTCTATTGCACAAAAGTTTTTAAACATGGCGGGTGTGGT  150

seq1  GGTAAGCACACCAGGTGTTGTGGTGACTACCTTTAATCTCAGCACCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCACACCAGGTGTTGTGGTGACTACCTTTAATCTCAGCACCCAAG  200

seq1  AGGCAAGGATGGGAGTATCTGTGAGTTAGAGATTAGCTTGGTCTACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGATGGGAGTATCTGTGAGTTAGAGATTAGCTTGGTCTACATAG  250

seq1  TGAATGTCAGGCCAGCTAGTGCTACATAATGAGACCCTGTATCAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCAGGCCAGCTAGTGCTACATAATGAGACCCTGTATCAAAACAA  300

seq1  CAACAAACAAACAAAAATAAGCCTTTTGTACCAGCAGTTCGTAGTTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAACAAAAATAAGCCTTTTGTACCAGCAGTTCGTAGTTGATC  350

seq1  AATTCAGGTATTCAAAACATTTTTAATGTCAAGTTTGATATTTCTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGTATTCAAAACATTTTTAATGTCAAGTTTGATATTTCTATTAT  400

seq1  TTTTTAATGGTAGAACTGTAGTTTTAGAAATCCTAAGGCTAAGAACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGGTAGAACTGTAGTTTTAGAAATCCTAAGGCTAAGAACTCTG  450

seq1  CGTAGTTCCCAACACAGACAATCTGGGTTTGAATTTCTCTTTCTCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTTCCCAACACAGACAATCTGGGTTTGAATTTCTCTTTCTCTATTT  500

seq1  TGGCAGTAATTAAAATTCTTGGTGCCTCAGTTCGGTATCTGTATAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTAATTAAAATTCTTGGTGCCTCAGTTCGGTATCTGTATAATGGG  550

seq1  ACTAGTATGGTTGGAGGTGAGGTTCAGTGGTTGAATACTTGTGTATTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTATGGTTGGAGGTGAGGTTCAGTGGTTGAATACTTGTGTATTAAG  600

seq1  ATAGGCAAGGCTCTGGGTTGCATCCTCAGCG-AAGTAAATTAATACTAAT  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAGGCAAGGCTCTGGGTTGCATCCTCAGCGAAAGTAAATTAATACTAAT  650

seq1  ACCAA-TACTAATATTAAGTCATAAATGGGAAGCATTCAAAATGCTACCT  698
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTACTAATATTAAGTCATAAATGGGAAGCATTCAAAATGCTACCT  700

seq1  A-TTAATGACAGCCA-TTTTCATCTGTA-TTTTATTTTTTAAATTTACAA  745
      | ||||||||||||| |||||||||||| ||||||||||||||||||  |
seq2  ATTTAATGACAGCCATTTTTCATCTGTATTTTTATTTTTTAAATTTAACA  750

seq1  TTCTATTTTATTTTGTGTATGTGTGTTCAGGTGAACATGACACAGGTATG  795
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCTATTTTATTTTGTGTATGTGTGTTCAGGTGAACATGAC-CAGGTATG  799

seq1  TT  797
      ||
seq2  TT  801

seq1: chr6_83361590_83362618
seq2: B6Ng01-018H19.g_68_1096 (reverse)

seq1  AGAGTTTTA-TACCATGTGCAGCCTGTTCCACTGGGATGCATAGCCGACT  49
      ||||||||| ||||| |  ||||||||| |  |||||||||||||||| |
seq2  AGAGTTTTATTACCA-GGACAGCCTGTTTCCATGGGATGCATAGCCGAAT  49

seq1  GTGCCCTGAGCCGCTAAGGGATAAAGCTCTGGTACCTCTACCTCTGGAAC  99
      ||| |||||| |||||| |||||||||||| ||| |||||||||| ||||
seq2  GTGACCTGAG-CGCTAAAGGATAAAGCTCT-GTA-CTCTACCTCTTGAAC  96

seq1  CTGTACCTCTGTCTCCAGCACAGCTGGCTGGCTGAATGGCATCTATCTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTCTGTCTCCAGCACAGCTGGCTGGCTGAATGGCATCTATCTTA  146

seq1  TCCTCCCCC-AAGGAACCTCTGAGGTCTCTGCTACAACAGGATGCAAAAG  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCAAAGGAACCTCTGAGGTCTCTGCTACAACAGGATGCAAAAG  196

seq1  GTCCTGGTGCCACCCTTTCTGGGTACAAGCCCCACCCAGCTCTCCTGGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGCCACCCTTTCTGGGTACAAGCCCCACCCAGCTCTCCTGGGC  246

seq1  CCTCCCACTCCTGTTGGGTCTCTTCTTTG-ACCTGTAATGTCAACAACTC  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTCCCACTCCTGTTGGGTCTCTTCTTTGAACCTGTAATGTCAACAACTC  296

seq1  TGGATCCCGTTAGGTCTTACCCAGGTTAGGGTGTGTCCCCTGTCGGGAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCGTTAGGTCTTACCCAGGTTAGGGTGTGTCCCCTGTCGGGAGC  346

seq1  AGCAGAGACTTGTCGTAAACAACAGGAAGATACAG-AAATGTCCTAAGTT  396
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCAGAGACTTGTCGTAAACAACAGGAAGATACAGAAAATGTCCTAAGTT  396

seq1  TTGTCTCCTTCTGAGGAGCTGAGAGAGCCAGAAGCTCAGAGCTCCCCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCTTCTGAGGAGCTGAGAGAGCCAGAAGCTCAGAGCTCCCCTTT  446

seq1  GTGCCACTATGTCCCCCCAGAGCCACAGGAGCCTCTGTTGGGAAGTCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTATGTCCCCCCAGAGCCACAGGAGCCTCTGTTGGGAAGTCATT  496

seq1  TTGCATCCTGCCCCACTGCCTCACCCTCTACAGTGAACTCCCTTCTGGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCTGCCCCACTGCCTCACCCTCTACAGTGAACTCCCTTCTGGGG  546

seq1  CTCTCTAATCTCTGCCACTGTCTCCCAGACAGCTACAGGGGTTCAACAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAATCTCTGCCACTGTCTCCCAGACAGCTACAGGGGTTCAACAGC  596

seq1  AGCAGCCCGCCACCCTAACGAAGGGAGTCCAGAAGCCCTGGTTTTGAGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCGCCACCCTAACGAAGGGAGTCCAGAAGCCCTGGTTTTGAGGC  646

seq1  AAGGCTGGGAACAGGTGGATTCTCCAGATAAGTGAGTCACCACCACCAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGAACAGGTGGATTCTCCAGATAAGTGAGTCACCACCACCAGA  696

seq1  GACAGCTTCGGACGCAATCCCAGCTTCCTAAGTTTTTCCAGGTTAGCAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTCGGACGCAATCCCAGCTTCCTAAGTTTTTCCAGGTTAGCAAT  746

seq1  CAAGTACACACCAGCTCTGCAATACTGTACCGAATGGGAAGCAAAGGGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACACACCAGCTCTGCAATACTGTACCGAATGGGAAGCAAAGGGAC  796

seq1  TTGCTTCAGAAGAGCGAGCGGTACGAGGGGAGCGAAGCGCTACTGTTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGAAGAGCGAGCGGTACGAGGGGAGCGAAGCGCTACTGTTCAT  846

seq1  CCTTTCTCAGCCTTGGCTGAAGGCTGACTTACAAGAGGAACAAGCTACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCAGCCTTGGCTGAAGGCTGACTTACAAGAGGAACAAGCTACAG  896

seq1  GGCTGGCCTGCTGCTTGTCAGCTACACACCACATTAGCAGAAACCTGCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTGCTGCTTGTCAGCTACACACCACATTAGCAGAAACCTGCCA  946

seq1  AGATGCCGGCAGCCAGAATGAGCAAGCCCCATCAACCTCTACAGATGCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCGGCAGCCAGAATGAGCAAGCCCCATCAACCTCTACAGATGCCC  996

seq1  ATCTCTCCGCGGTGGACTCTATGGGGTGAATTC  1029
      |||||||||||||||||||||||||||||||||
seq2  ATCTCTCCGCGGTGGACTCTATGGGGTGAATTC  1029