BAC Information

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BAC

Clone NameB6Ng01-018N09
Chromosome6 (Build37)
Map Location 131,080,786 - 131,081,939
singlet/doubletsinglet
Overlap geneLOC667830
Upstream geneLOC100038894, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
Downstream geneEG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N09.bB6Ng01-018N09.g
ACCDH852120DH852121
length1,1411,162
definitionDH852120|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N09, 5' end.DH852121|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcatagcaacacactattggcttattcaaacattaacagaaaa
attatatgtatgtgcagggtgtcagagttctgtgagttgttgactcagtt
tagatagccctgttgtgtcttcacattcctctttatctttaatgttaagc
tgtacccaggaatgttttaactacgaggcatacccaggtttgtttttctc
ttttctcagccccaggtagcctctaggctcacaaacaaccagcaatttct
gagtactttatatgacttacaggtcttgaaatttcatctttctttcactg
acagcaccaaacgccaaagagtcactcatttgtaaaacttgtgccgcaaa
tggattctgcaaaccgttaacctcagcaagtcttgccagtaactgaagat
gttcagttgttcccaagtcaactccagtcctttgtagttcatcagtgtcc
ccaaaatgaactagcactagaagcatcagttcattgagtaacatgaccaa
ctttcagtggtctctcagctaactcaaaccattaagctgttccgaagcct
tttgggcacattcttagtcagaaaatgcaacaaatccataccccttagat
caactggtttcattattcattaggaactgaatactttcaatccttccaaa
aggttcaaagattcccccccaaagcatctcttcagttatgttaaaatgta
gtacagcctcataggtcctttttgtaaactgtttaccattgcagcagctc
tgtctttttctgcctgtaatgcctggactataattggcactcctaaaact
cattggccatttaatccaattgctagaggcactgaactgacatcaacaca
ttccacataggaaattcctttggattgtcttgaatttctatcagaaatca
tcctcacatctcgaacatttcctactgtagagaacaattcttccaaatct
cttggtggacttcttgctgccaatgcacacacaaaactgccctcgcatcc
ctttcctcatagtgagattatcaatagttccctcatagggctcttgtttt
cctggatggacttttccttcgaacatttttctgtttaaaccaatctttcc
tcggatggcactttaaacattttttttaatttttcattttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcgtcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctatgcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagaaga
aaggatggaccatgtaaagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggattgatcacagggctccta
tggagagctagagaaagaacccagaagctaaatggattctgcaacctata
ggtggaacaaattatggactaccaggacccgagcttcttgactcctagct
gctatttacaatgaatggtctatccgcatcctgggaggaggcctatggac
acgctactttattgcccagtcagggtacgcctgggcagagggggagtgtg
gtgttagggacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131080786_131081939
seq2: B6Ng01-018N09.b_44_1184 (reverse)

seq1  AAAAATGAAAAAAAATGTAAAAAAAAAATGTTTAACAGTGCCATCCGAGG  50
      ||||||||||||        ||||||||||||||| ||||||||||||||
seq2  AAAAATGAAAAA------TTAAAAAAAATGTTTAA-AGTGCCATCCGAGG  43

seq1  AAAGATTGTGTTAAACAG-AAGATGTTCGAAAAGGAAAAAGTCCATTCAG  99
      ||||||||  |||||||| || |||||||||   | |||||||||| |||
seq2  AAAGATTGGTTTAAACAGAAAAATGTTCGAA---GGAAAAGTCCATCCAG  90

seq1  GAAAAACAAGAGCCCTATGAGGGAACCTATTGATAATCTCACTATTGAGG  149
      | ||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  G-AAAACAAGAGCCCTATGAGGGAA-CTATTGATAATCTCACTA-TGAGG  137

seq1  AAAGGGATGCGAGGGCAGTTTTGTGTGTGCAATTGGCAGCAAGAAGTCCA  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGGATGCGAGGGCAGTTTTGTGTGTGC-ATTGGCAGCAAGAAGTCCA  186

seq1  CCAAGAGATTTGGAAGAATTGTTCTCTACAGTAGGAAATGTTCGAGATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGATTTGGAAGAATTGTTCTCTACAGTAGGAAATGTTCGAGATGT  236

seq1  GAGGATGATTTCTGATAGAAATTCAAGACAATCCAAAGGAATTTCCTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGATTTCTGATAGAAATTCAAGACAATCCAAAGGAATTTCCTATG  286

seq1  TGGAATGTGTTGATGTCAGTTCAGTGCCTCTAGCAATTGGATTAAATGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTGTTGATGTCAGTTCAGTGCCTCTAGCAATTGGATTAAATGGC  336

seq1  CAATGAGTTTTAGGAGTGCCAATTATAGTCCAGGCATTACAGGCAGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTTTTAGGAGTGCCAATTATAGTCCAGGCATTACAGGCAGAAAA  386

seq1  AGACAGAGCTGCTGCAATGGTAAACAGTTTACAAAAAGGACCTATGAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCTGCTGCAATGGTAAACAGTTTACAAAAAGGACCTATGAGGC  436

seq1  TGTACTACATTTTAACATAACTGAAGAGATGCTTTGGGGGGGAATCTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACATTTTAACATAACTGAAGAGATGCTTTGGGGGGGAATCTTTG  486

seq1  AACCTTTTGGAAGGATTGAAAGTATTCAGTTCCTAATGAATAATGAAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTGGAAGGATTGAAAGTATTCAGTTCCTAATGAATAATGAAACC  536

seq1  AGTTGATCTAAGGGGTATGGATTTGTTGCATTTTCTGACTAAGAATGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATCTAAGGGGTATGGATTTGTTGCATTTTCTGACTAAGAATGTGC  586

seq1  CCAAAAGGCTTCGGAACAGCTTAATGGTTTGAGTTAGCTGAGAGACCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGCTTCGGAACAGCTTAATGGTTTGAGTTAGCTGAGAGACCACT  636

seq1  GAAAGTTGGTCATGTTACTCAATGAACTGATGCTTCTAGTGCTAGTTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGGTCATGTTACTCAATGAACTGATGCTTCTAGTGCTAGTTCAT  686

seq1  TTTGGGGACACTGATGAACTACAAAGGACTGGAGTTGACTTGGGAACAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGACACTGATGAACTACAAAGGACTGGAGTTGACTTGGGAACAAC  736

seq1  TGAACATCTTCAGTTACTGGCAAGACTTGCTGAGGTTAACGGTTTGCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCTTCAGTTACTGGCAAGACTTGCTGAGGTTAACGGTTTGCAGA  786

seq1  ATCCATTTGCGGCACAAGTTTTACAAATGAGTGACTCTTTGGCGTTTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGCGGCACAAGTTTTACAAATGAGTGACTCTTTGGCGTTTGGT  836

seq1  GCTGTCAGTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAG  886

seq1  TACTCAGAAATTGCTGGTTGTTTGTGAGCCTAGAGGCTACCTGGGGCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAAATTGCTGGTTGTTTGTGAGCCTAGAGGCTACCTGGGGCTGA  936

seq1  GAAAAGAGAAAAACAAACCTGGGTATGCCTCGTAGTTAAAACATTCCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAAAAACAAACCTGGGTATGCCTCGTAGTTAAAACATTCCTGG  986

seq1  GTACAGCTTAACATTAAAGATAAAGAGGAATGTGAAGACACAACAGGGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTTAACATTAAAGATAAAGAGGAATGTGAAGACACAACAGGGCT  1036

seq1  ATCTAAACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACATACAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACATACAT  1086

seq1  ATAATTTTTCTGTTAATGTTTGAATAAGCCAATAGTGTGTTGCTATGCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTCTGTTAATGTTTGAATAAGCCAATAGTGTGTTGCTATGCTG  1136

seq1  AATTC  1154
      |||||
seq2  AATTC  1141