BAC Information

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BAC

Clone NameB6Ng01-019C22
Chromosome6 (Build37)
Map Location 48,893,747 - 49,035,613
singlet/doubletdoublet
Overlap geneLOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
Upstream geneA230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik
Downstream geneLOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019C22.bB6Ng01-019C22.g
ACCDH852351DH852352
length1,1141,101
definitionDH852351|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C22, 5' end.DH852352|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,034,502 - 49,035,613)(48,893,747 - 48,894,852)
sequence
gaattcatctagcattttcatatggtggatttaaactgcttaaaaaagaa
aatgtgaccggctctcctgcttgggtctcaggggagatatgcttaaggcc
agagctcttcctcagtatttgatttttccagtgtttgttttttaaaaaac
tgacaggtgctacatttctatctgttggtttcaattctgccatatttcat
gtctagcctttagagtggccaatcatgttttactttcatttaagcactgg
tagtctggagtacctggtactgagtaactctataattgtgttttgtgttc
accatatacagatcatttctcatctgtagtgtgccccaaatgcagcttca
ctttccaggtaccctgatgcagaataaagttttcatcataaaccacagct
tctgtagtatgttttcagatgagtgagtgttcttgagttattttctatga
taatcttacagtaaacagtaacctaccagcacgttattttttcaggccct
gattcaagaatgtgaaccttggttgtcctatttaacacaaactaagatct
acagatttacatgactttccataatgttctaaatataaatattgtacttg
tgccacgtatttatagaaatgctatccttataccctagcacccagccact
tactattgccctcagacatatttggaaaaaaactggggaagggaggcagg
ctgatagtctaaatagagaacttgagtcagtcacggggtcagtgctacct
gaggcatcatgctagaatttcaagaataaagataggatgctgaaaaacag
ggactgaattactggttcttggtctgtgagctaccagcaagagtgttcac
gaggtagacaggaacttgtagtgaccaagcagatggctcagtcatatcaa
agggaagaatggcattaactttgtttatttacatttgaactccactggag
tcagggatgaagtgtcatcttccagtccaagaatgaagtcttcagtaacg
tcctcagctgcttatctgagctaactggtcatcaaaagaacggtagagtc
ataagtttctctaattcataggttctcctgggtttctggagcatcaatgg
aataaccatactcc
gaattcactcggacaaccggattcttctacggcaaagctttattgcttca
tctgaaggaagaccccgaacaaggaaaatggtgctgcttatatacccttc
cgtgtgacgtgccagctcctgattagctgctcactcattacccgactact
acgcccaggatgggcagtgacttggcctgaatttactcttacacctgcgc
acattacttgtttaccagttaggcacagcagaggctcatgatggtgattg
ctcacggatctccacaagctcaggggcctccaggccttggatgccgatga
gcatccagcacacttctaggagataatcacagtttattcacggcagcacc
aacttccccatcctcagccctgagggtgtctcctgagagtgctcgggcac
cctggtttcttctctgcctacaggttcttcccagtggtgactaagtatca
tgagtctgagttgaccaatattcaacttaaacaaccagaaccttccctgg
gatcctgctgtgctctttgagaaccctgagaatgacaacaatggagatga
ggtactgacctagcctccctctccacctttggctttgtcactagcctctt
tctggacctgttcgtggactggagggtaaagggaaacttctggggtcatg
agagatgggcctaccccttttaattggaacagagggcatcttggagagtt
tgtagaaatacataaaaatgacccaagccagagtatcttgggggtctgta
ctcagcactgccctgctcactgattttctgtcttgcccacaggatttggt
agccctgagtgacaatgaatttcttgtataagcaccactctgagagtgtc
cacaacttagccacatctgggactctatggcataccataatacccacata
caatggtcacaactatgttggtcaatgatccctgaggacagggtctgcct
gaggtcttcctttaaatacatggagcatacatcctatgtgagagtctgac
ccagctttctgtctaggaaccccatacccactaggacaaacataaacccc
ttctctttcacccaagtatgcactctctttgcaccaaagaagggagtggg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49034502_49035613
seq2: B6Ng01-019C22.b_44_1157 (reverse)

seq1  GGAGTATGGTGATCCATTTGATGCTTCCAGAAA-CCAGAGAAACCTATGA  49
      |||||||||| || |  ||||||| |||||||| ||||   |||||||||
seq2  GGAGTATGGTTATTCCATTGATGC-TCCAGAAACCCAGGAGAACCTATGA  49

seq1  ATTAGAGAAACTATGGACTCTA-CGTTCTTTTGATGACCAGTTAGCTCAG  98
      ||||||||||||   ||||||| |||||||||||||||||||||||||||
seq2  ATTAGAGAAACTTATGACTCTACCGTTCTTTTGATGACCAGTTAGCTCAG  99

seq1  AT-AGCAGCTGA-GACGTTACCTGAAGACTTCATTCTTGGACTGGAAGAT  146
      || ||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  ATAAGCAGCTGAGGACGTTA-CTGAAGACTTCATTCTTGGACTGGAAGAT  148

seq1  GACACTTCATCCCTGACTCCAGTGGAGTTCAAATGTAAATAAACAAAGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCATCCCTGACTCCAGTGGAGTTCAAATGTAAATAAACAAAGTT  198

seq1  AATGCCATTCTTCCCTTTGATATGACTGAGCCATCTGCTTGGTCACTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATTCTTCCCTTTGATATGACTGAGCCATCTGCTTGGTCACTACA  248

seq1  AGTTCCTGTCTACCTCGTGAACACTCTTGCTGGTAGCTCACAGACCAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGTCTACCTCGTGAACACTCTTGCTGGTAGCTCACAGACCAAGA  298

seq1  ACCAGTAATTCAGTCCCTGTTTTTCAGCATCCTATCTTTATTCTTGAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAATTCAGTCCCTGTTTTTCAGCATCCTATCTTTATTCTTGAAAT  348

seq1  TCTAGCATGATGCCTCAGGTAGCACTGACCCCGTGACTGACTCAAGTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATGATGCCTCAGGTAGCACTGACCCCGTGACTGACTCAAGTTCT  398

seq1  CTATTTAGACTATCAGCCTGCCTCCCTTCCCCAGTTTTTTTCCAAATATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGACTATCAGCCTGCCTCCCTTCCCCAGTTTTTTTCCAAATATG  448

seq1  TCTGAGGGCAATAGTAAGTGGCTGGGTGCTAGGGTATAAGGATAGCATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGCAATAGTAAGTGGCTGGGTGCTAGGGTATAAGGATAGCATTT  498

seq1  CTATAAATACGTGGCACAAGTACAATATTTATATTTAGAACATTATGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATACGTGGCACAAGTACAATATTTATATTTAGAACATTATGGAA  548

seq1  AGTCATGTAAATCTGTAGATCTTAGTTTGTGTTAAATAGGACAACCAAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTAAATCTGTAGATCTTAGTTTGTGTTAAATAGGACAACCAAGG  598

seq1  TTCACATTCTTGAATCAGGGCCTGAAAAAATAACGTGCTGGTAGGTTACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTCTTGAATCAGGGCCTGAAAAAATAACGTGCTGGTAGGTTACT  648

seq1  GTTTACTGTAAGATTATCATAGAAAATAACTCAAGAACACTCACTCATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGTAAGATTATCATAGAAAATAACTCAAGAACACTCACTCATCT  698

seq1  GAAAACATACTACAGAAGCTGTGGTTTATGATGAAAACTTTATTCTGCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATACTACAGAAGCTGTGGTTTATGATGAAAACTTTATTCTGCAT  748

seq1  CAGGGTACCTGGAAAGTGAAGCTGCATTTGGGGCACACTACAGATGAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACCTGGAAAGTGAAGCTGCATTTGGGGCACACTACAGATGAGAA  798

seq1  ATGATCTGTATATGGTGAACACAAAACACAATTATAGAGTTACTCAGTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTATATGGTGAACACAAAACACAATTATAGAGTTACTCAGTAC  848

seq1  CAGGTACTCCAGACTACCAGTGCTTAAATGAAAGTAAAACATGATTGGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTCCAGACTACCAGTGCTTAAATGAAAGTAAAACATGATTGGCC  898

seq1  ACTCTAAAGGCTAGACATGAAATATGGCAGAATTGAAACCAACAGATAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAGGCTAGACATGAAATATGGCAGAATTGAAACCAACAGATAGA  948

seq1  AATGTAGCACCTGTCAGTTTTTTAAAAAACAAACACTGGAAAAATCAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCACCTGTCAGTTTTTTAAAAAACAAACACTGGAAAAATCAAAT  998

seq1  ACTGAGGAAGAGCTCTGGCCTTAAGCATATCTCCCCTGAGACCCAAGCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAAGAGCTCTGGCCTTAAGCATATCTCCCCTGAGACCCAAGCAG  1048

seq1  GAGAGCCGGTCACATTTTCTTTTTTAAGCAGTTTAAATCCACCATATGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCGGTCACATTTTCTTTTTTAAGCAGTTTAAATCCACCATATGAA  1098

seq1  AATGCTAGATGAATTC  1112
      ||||||||||||||||
seq2  AATGCTAGATGAATTC  1114

seq1: chr6_48893747_48894852
seq2: B6Ng01-019C22.g_69_1169

seq1  GAATTCACTCGGACAACCGGATTCTTCTACGGCAAAGCTTTATTGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGACAACCGGATTCTTCTACGGCAAAGCTTTATTGCTTCA  50

seq1  TCTGAAGGAAGACCCCGAACAAGGAAAATGGTGCTGCTTATATACCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAAGACCCCGAACAAGGAAAATGGTGCTGCTTATATACCCTTC  100

seq1  CGTGTGACGTGCCAGCTCCTGATTAGCTGCTCACTCATTACCCGACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGACGTGCCAGCTCCTGATTAGCTGCTCACTCATTACCCGACTACT  150

seq1  ACGCCCAGGATGGGCAGTGACTTGGCCTGAATTTACTCTTACACCTGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCAGGATGGGCAGTGACTTGGCCTGAATTTACTCTTACACCTGCGC  200

seq1  ACATTACTTGTTTACCAGTTAGGCACAGCAGAGGCTCATGATGGTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTTGTTTACCAGTTAGGCACAGCAGAGGCTCATGATGGTGATTG  250

seq1  CTCACGGATCTCCACAAGCTCAGGGGCCTCCAGGCCTTGGATGCCGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGATCTCCACAAGCTCAGGGGCCTCCAGGCCTTGGATGCCGATGA  300

seq1  GCATCCAGCACACTTCTAGGAGATAATCACAGTTTATTCACGGCAGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAGCACACTTCTAGGAGATAATCACAGTTTATTCACGGCAGCACC  350

seq1  AACTTCCCCATCCTCAGCCCTGAGGGTGTCTCCTGAGAGTGCTCGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCATCCTCAGCCCTGAGGGTGTCTCCTGAGAGTGCTCGGGCAC  400

seq1  CCTGGTTTCTTCTCTGCCTACAGGTTCTTCCCAGTGGTGACTAAGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCTTCTCTGCCTACAGGTTCTTCCCAGTGGTGACTAAGTATCA  450

seq1  TGAGTCTGAGTTGACCAATATTCAACTTAAACAACCAGAACCTTCCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGTTGACCAATATTCAACTTAAACAACCAGAACCTTCCCTGG  500

seq1  GATCCTGCTGTGCTCTTTGAGAACCCTGAGAATGACAACAATGGAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCTGTGCTCTTTGAGAACCCTGAGAATGACAACAATGGAGATGA  550

seq1  GGTACTGACCTAGCCTCCCTCTCCACCTTTGGCTTTGTCACTAGCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGACCTAGCCTCCCTCTCCACCTTTGGCTTTGTCACTAGCCTCTT  600

seq1  TCTGGACCTGTTCGTGGACTGGAGGGTAAAGGGAAACTTCTGGGGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACCTGTTCGTGGACTGGAGGGTAAAGGGAAACTTCTGGGGTCATG  650

seq1  AGAGATGGGCCTACCCCTTTTAATTGGAACAGAGGGCATCTTGGAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGCCTACCCCTTTTAATTGGAACAGAGGGCATCTTGGAGAGTT  700

seq1  TGTAGAAATACATAAAAATGACCCAAGCCAGAGTATCTTGGGGGTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATACATAAAAATGACCCAAGCCAGAGTATCTTGGGGGTCTGTA  750

seq1  CTCAGCACTGCCCTGCTCACTGATTTTCTGTCTTGCCCACAGGATTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACTGCCCTGCTCACTGATTTTCTGTCTTGCCCACAGGATTTGGT  800

seq1  AG-CCTGAGTGACAATGAATTTCTTGTATAAGCACCACTCTGAGAGTGTC  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGTGACAATGAATTTCTTGTATAAGCACCACTCTGAGAGTGTC  850

seq1  CACAACTTAGCCACATCTGGGACTCTATGGCATACCATAATACCCACATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTAGCCACATCTGGGACTCTATGGCATACCATAATACCCACATA  900

seq1  CAATGGTCACAACTATGTTGGTCAATGGATCCCTGAGGACAGGGTCTGCC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAATGGTCACAACTATGTTGGTCAAT-GATCCCTGAGGACAGGGTCTGCC  949

seq1  TGAGGCTCTTCCTTTAGATAACATGGAGCATACAATCCTATGTGAAGAGT  999
      ||||| |||||||||| || ||||||||||||| |||||||||| |||||
seq2  TGAGG-TCTTCCTTTAAAT-ACATGGAGCATAC-ATCCTATGTG-AGAGT  995

seq1  CTGACCCAGC-TTCTGTCTAGGAACCCCATAACCCCACAAGGACAAACAA  1048
      |||||||||| ||||||||||||||||||||  ||||| |||||||||| 
seq2  CTGACCCAGCTTTCTGTCTAGGAACCCCATA--CCCACTAGGACAAACAT  1043

seq1  TAAACCCTTCGCTTCCACCCAAGTATGCAGCTTCTTAGCAGCAAAGGAGG  1098
       || |||||| ||| ||||||||||||||   |||| ||| ||||| |||
seq2  AAACCCCTTCTCTTTCACCCAAGTATGCACTCTCTTTGCACCAAAGAAGG  1093

seq1  GAGTGGGC  1106
      ||||||||
seq2  GAGTGGGC  1101