BAC Information

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BAC

Clone NameB6Ng01-019I23
Chromosome6 (Build37)
Map Location 108,510,763 - 108,651,181
singlet/doubletdoublet
Overlap geneLOC677205, Bhlhb2
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
Downstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I23.bB6Ng01-019I23.g
ACCDH852612DH852613
length943794
definitionDH852612|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I23, 5' end.DH852613|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,510,763 - 108,511,718)(108,650,394 - 108,651,181)
sequence
gaattccaataatttaactacaaagcagataaacaaaaacaaacatactt
tcaggatagacaaaagcattcagagacaatttcccatcaaagaaatacaa
atggggctggtgagatggctcagcaggtaagagcacccgactgctcttcc
gaaggtctggagttcaaatcccagcaaccacatggtggctcacaaccatc
cgtaatgagatctgactccctcttctgaagtgtctgaagacagctacagt
gtacttacatataataaataataaatcttttaaaaaaaaaaaaaagaaat
acaaatggccactggcagatgtgtgtgaacattccacgtcagaaatcatg
gtgaaaatgtgaatcaaaaccacagtgagagaacgaacacctcacaccta
ttagggtaagtactagaccaacaatgacagagacagaaaccaggaagtac
cagtcgtaggcaaggatatagtcataaagtctgtgtgtagtggatataat
agatcaggtacaaccaaagtacagagatgccgcaaatactagaaaatggc
tgtgggtggctcggtgaggatgggtacttgctatgcaaggatgaggagct
aagtacaaattccagtgcccgcacttttaaaggctaggtgtagctccatg
tgcacctataactccattgctgttggggtgggggataaagacagaaggat
ccctgagactgcttggctgccagcctagctccaggttcaaggaaagacct
gtctcaagaaatcaatggaccacacttacctgcctcttaggttgtgtttt
ctaaccagagtttttaaaaatttcattctgccttgatgtggtaacttgac
agctgtcctcagccatctgcagcctcatctttttgcttgttgttgtttgt
tttgttttgtttgttagggagttggtctgtttgggggaaaatg
gaattcactcatgcaagttagcagcagcccaccagccaaaggctctgaaa
cattgtgaggcagctgggacctgggaagccagctggggcaaaacagtata
cacacacacacacacacacacacacacacaccacaccacaccacaccaca
ccacaccacaccacaccacaccacaccacacgcaaacacacacttgggta
gtggtgactgatggctcccaccactgcacattaatcagtaagtctatcag
cgggctgtcaggcatccgggagcccagatcgttattgtcaccgaaggctt
gccagttctttcatctgggtctgggatcgcccacggggcttgcagccatc
ctgcctcgctttgcagcgactttatcccactctctgtgggggctgcacag
ccaggacctcgccccacccccacccccgtgtgatccgctgcgctgtccca
gatgctaccgctgagaatgaggattgaagcttctcggtggtgggaaggga
gggtgaagccaaaagaaaaactcaggcctaccctgactgtgcaagggatc
gctaggggtggattgatttctcctatgtagagcttctacagtctccagct
gaagttcttggaggccactgttccgccctctcttcccctctgcctctgcc
ctggtgggcgcccctgtctctgtgtaagtgcagagacctagtttttgtat
tgagcaagagtggatgagggaaacccttctgaagcctcattttcctcttc
tacagaagagagggagggcgggggatgagaaggggagtttagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108510763_108511718
seq2: B6Ng01-019I23.b_46_988

seq1  GAATTCCAATAATTTAACTACAAAGCAGATAAACAAAAACAAACATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAATTTAACTACAAAGCAGATAAACAAAAACAAACATACTT  50

seq1  TCAGGATAGACAAAAGCATTCAGAGACAATTTCCCATCAAAGAAATACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGACAAAAGCATTCAGAGACAATTTCCCATCAAAGAAATACAA  100

seq1  ATGGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCTCTTCC  150

seq1  GAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC  200

seq1  CGTAATGAGATCTGACTCCCTCTTCTGAAGTGTCTGAAGACAGCTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATGAGATCTGACTCCCTCTTCTGAAGTGTCTGAAGACAGCTACAGT  250

seq1  GTACTTACATATAATAAATAATAAATCTTTTAAAAAAAAAAAAAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTACATATAATAAATAATAAATCTTTTAAAAAAAAAAAAAAGAAAT  300

seq1  ACAAATGGCCACTGGCAGATGTGTGTGAACATTCCACGTCAGAAATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCCACTGGCAGATGTGTGTGAACATTCCACGTCAGAAATCATG  350

seq1  GTGAAAATGTGAATCAAAACCACAGTGAGAGAACGAACACCTCACACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGTGAATCAAAACCACAGTGAGAGAACGAACACCTCACACCTA  400

seq1  TTAGGGTAAGTACTAGACCAACAATGACAGAGACAGAAACCAGGAAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTAAGTACTAGACCAACAATGACAGAGACAGAAACCAGGAAGTAC  450

seq1  CAGTCGTAGGCAAGGATATAGTCATAAAGTCTGTGTGTAGTGGATATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGTAGGCAAGGATATAGTCATAAAGTCTGTGTGTAGTGGATATAAT  500

seq1  AGATCAGGTACAACCAAAGTACAGAGATGCCGCAAATACTAGAAAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGTACAACCAAAGTACAGAGATGCCGCAAATACTAGAAAATGGC  550

seq1  TGTGGGTGGCTCGGTGAGGATGGGTACTTGCTATGCAAGGATGAGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGCTCGGTGAGGATGGGTACTTGCTATGCAAGGATGAGGAGCT  600

seq1  AAGTACAAATTCCAGTGCCCGCACTTTTAAAGGCTAGGTGTAGCTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAATTCCAGTGCCCGCACTTTTAAAGGCTAGGTGTAGCTCCATG  650

seq1  TGCACCTATAACTCCATTGCTGTTGGGGTGGGGGATAAAGACAGAAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTATAACTCCATTGCTGTTGGGGTGGGGGATAAAGACAGAAGGAT  700

seq1  CCCTGAGACTGCTTGGCTGCCAGCCTAGCTCCAGGTTCAAGGAAAGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACTGCTTGGCTGCCAGCCTAGCTCCAGGTTCAAGGAAAGACCT  750

seq1  GTCTCAAAGAAATCAATGGACCACACTTACCTGCCTCTTAGGTTGTGTTT  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTC-AAGAAATCAATGGACCACACTTACCTGCCTCTTAGGTTGTGTTT  799

seq1  TCTAACCAGAGTTTTTAAAAATTTCATTCTGCCTTGATTGTGGTAACTTG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTAACCAGAGTTTTTAAAAATTTCATTCTGCCTTGA-TGTGGTAACTTG  848

seq1  ACAGCAGTCCTCAGCCATCTGCAGCCTCATCTTTTTTTGCTTGT--TTGT  898
      ||||| |||||||||||||||||||||||||  |||||||||||  ||||
seq2  ACAGCTGTCCTCAGCCATCTGCAGCCTCATC--TTTTTGCTTGTTGTTGT  896

seq1  TTGTTTTGTTTTTGTTTTTTGTTTTGTTTAGGGAGTTTGGTCTGTTTTGG  948
      ||||||||        ||||||||   |||||||| ||||||||||| ||
seq2  TTGTTTTG--------TTTTGTTT--GTTAGGGAG-TTGGTCTGTTTGGG  935

seq1  GGAGAATG  956
      ||| ||||
seq2  GGAAAATG  943

seq1: chr6_108650394_108651181
seq2: B6Ng01-019I23.g_67_860 (reverse)

seq1  CTCTAGACTCCCCTTCTCCTCCCCCGCCCT-CCTCTCTTCTGTAGAAGAG  49
      ||||| |||||||||||| ||||||||||| |||||||||||||||||||
seq2  CTCTAAACTCCCCTTCTCATCCCCCGCCCTCCCTCTCTTCTGTAGAAGAG  50

seq1  GAAACTGAGGC-TCAGAAGGGTTTCCCTCATCCACTCTTGCTC-ATAC-A  96
      |||| |||||| ||||||||||||||||||||||||||||||| |||| |
seq2  GAAAATGAGGCTTCAGAAGGGTTTCCCTCATCCACTCTTGCTCAATACAA  100

seq1  AAACTAGGTCTCTGCACTTACACAGAGACA-GGGCGCCCACCA-GGCAGA  144
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  AAACTAGGTCTCTGCACTTACACAGAGACAGGGGCGCCCACCAGGGCAGA  150

seq1  GGCAGAGGGGAAGAGAGGGCGGAACAGTGGCCTCCAAGAACTTCAGCTGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGGAAGAGAGGGCGGAACAGTGGCCTCCAAGAACTTCAGCTGG  200

seq1  AGACTGTAGAAGCTCTACATAGGAGAAATCAATCCACCCCTAGCGATCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAGAAGCTCTACATAGGAGAAATCAATCCACCCCTAGCGATCCC  250

seq1  TTGCACAGTCAGGGTAGGCCTGAGTTTTTCTTTTGGCTTCACCCTCCCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGTCAGGGTAGGCCTGAGTTTTTCTTTTGGCTTCACCCTCCCTT  300

seq1  CCCACCACCGAGAAGCTTCAATCCTCATTCTCAGCGGTAGCATCTGGGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACCGAGAAGCTTCAATCCTCATTCTCAGCGGTAGCATCTGGGAC  350

seq1  AGCGCAGCGGATCACACGGGGGTGGGGGTGGGGCGAGGTCCTGGCTGTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGCGGATCACACGGGGGTGGGGGTGGGGCGAGGTCCTGGCTGTGC  400

seq1  AGCCCCCACAGAGAGTGGGATAAAGTCGCTGCAAAGCGAGGCAGGATGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCACAGAGAGTGGGATAAAGTCGCTGCAAAGCGAGGCAGGATGGC  450

seq1  TGCAAGCCCCGTGGGCGATCCCAGACCCAGATGAAAGAACTGGCAAGCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCCCGTGGGCGATCCCAGACCCAGATGAAAGAACTGGCAAGCCT  500

seq1  TCGGTGACAATAACGATCTGGGCTCCCGGATGCCTGACAGCCCGCTGATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGACAATAACGATCTGGGCTCCCGGATGCCTGACAGCCCGCTGATA  550

seq1  GACTTACTGATTAATGTGCAGTGGTGGGAGCCATCAGTCACCACTACCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACTGATTAATGTGCAGTGGTGGGAGCCATCAGTCACCACTACCCA  600

seq1  AGTGTGTGTTTGCGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTTTGCGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGT  650

seq1  GTGGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACT  700

seq1  GTTTTGCCCCAGCTGGCTTCCCAGGTCCCAGCTGCCTCACAATGTTTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCCCAGCTGGCTTCCCAGGTCCCAGCTGCCTCACAATGTTTCAG  750

seq1  AGCCTTTGGCTGGTGGGCTGCTGCTAACTTGCATGAGTGAATTC  788
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGGCTGGTGGGCTGCTGCTAACTTGCATGAGTGAATTC  794