BAC Information

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BAC

Clone NameB6Ng01-019N17
Chromosome6 (Build37)
Map Location 38,688,306 - 38,689,426
singlet/doubletsinglet
Overlap geneHipk2
Upstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019N17.b
ACCDH852823
length1,122
definitionDH852823|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N17, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcctccattttcttcctgaatcaaaactaacccctaattaca
caggcattaaaggagtacaggtcccggcatgaaggcctttagtggcctct
tgaaggcctttagtggcatctgccattccagctcctaagcatccactgtg
ttctactcacttcatatgctgctcctcatgcgcttctgcctcttctgttt
ctatggccacttttgctcaagtgctaatatttaagacaaagcctcattta
atctatgatttaaaatgtctgttgcaataactggataaaacaaggtaaca
cttatctatcactgtatactacaggtatgctctattttggacaaaatgga
tgtttgtaggctatcccagaatattattttcatgaaagatacattccaaa
tttcagaaattgaatctggtcatgacccagagagtcctacttctttctaa
gttaatgactatttacactggccgctcgatacacaacgcatggtgagtaa
actggtagtcctagagagaagagaaaacatgctcattggtaaacaacagc
atgcctgaaggtcctggtgagtaccaagtgcatgctgcatgcttttacat
tgagctgaagatgataaaatgatgtggatgcattttttttttgggatgca
tttaaagcattcagtgattttatgatggttcaatgtatagttttcaggct
atagagcttttttttttttttcctccctacactgggctaaaatttgactg
ttgggataagacaaacatttttactttgggttagtttataaaacaattgg
cttttacaaatatgtacaccaaaatattggtgtagagaaatgagtggttt
tgcttttacctgcaaaaccttatgctagagcagcttaagcccaggcccgc
gggtggggcccaaagcaggctgggtaggcctgaaggctcggtcccactct
agagcggcttcaaggtctttttggaacctacaaatattcagcccactctt
tagtaggcctaggggtaacctgcctttctcgaagggctgaccttctaagt
ttctaaaattgcatgctcctaagggaaccacctacggaagcttccttaat
aacaaagaaacagagcctgctt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38688306_38689426
seq2: B6Ng01-019N17.b_44_1165

seq1  GAATTCTCTCCTCCATTTTCTTCCTGAATCAAAACTAACCCCTAATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCCATTTTCTTCCTGAATCAAAACTAACCCCTAATTACA  50

seq1  CAGGCATTAAAGGAGTACAGGTCCCGGCATGAAGGCCTTTAGTGGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTAAAGGAGTACAGGTCCCGGCATGAAGGCCTTTAGTGGCCTCT  100

seq1  TGAAGGCCTTTAGTGGCATCTGCCATTCCAGCTCCTAAGCATCCACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCTTTAGTGGCATCTGCCATTCCAGCTCCTAAGCATCCACTGTG  150

seq1  TTCTACTCACTTCATATGCTGCTCCTCATGCGCTTCTGCCTCTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCACTTCATATGCTGCTCCTCATGCGCTTCTGCCTCTTCTGTTT  200

seq1  CTATGGCCACTTTTGCTCAAGTGCTAATATTTAAGACAAAGCCTCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCACTTTTGCTCAAGTGCTAATATTTAAGACAAAGCCTCATTTA  250

seq1  ATCTATGATTTAAAATGTCTGTTGCAATAACTGGATAAAACAAGGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGATTTAAAATGTCTGTTGCAATAACTGGATAAAACAAGGTAACA  300

seq1  CTTATCTATCACTGTATACTACAGGTATGCTCTATTTTGGACAAAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTATCACTGTATACTACAGGTATGCTCTATTTTGGACAAAATGGA  350

seq1  TGTTTGTAGGCTATCCCAGAATATTATTTTCATGAAAGATACATTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGGCTATCCCAGAATATTATTTTCATGAAAGATACATTCCAAA  400

seq1  TTTCAGAAATTGAATCTGGTCATGACCCAGAGAGTCCTACTTCTTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAATTGAATCTGGTCATGACCCAGAGAGTCCTACTTCTTTCTAA  450

seq1  GTTAATGACTATTTACACTGGCCGCTCGATACACAACGCATGGTGAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGACTATTTACACTGGCCGCTCGATACACAACGCATGGTGAGTAA  500

seq1  ACTGGTAGTCCTAGAGAGAAGAGAAAACATGCTCATTGGTAAACAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGTCCTAGAGAGAAGAGAAAACATGCTCATTGGTAAACAACAGC  550

seq1  ATGCCTGAAGGTCCTGGTGAGTACCAAGTGCATGCTGCATGCTTTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGAAGGTCCTGGTGAGTACCAAGTGCATGCTGCATGCTTTTACAT  600

seq1  TGAGCTGAAGATGATAAAATGATGTGGATGCATTTTTTTTTTGGGATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGAAGATGATAAAATGATGTGGATGCATTTTTTTTTTGGGATGCA  650

seq1  TTTAAAGCATTCAGTGATTTTATGATGGTTCAATGTATAGTTTTCAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCATTCAGTGATTTTATGATGGTTCAATGTATAGTTTTCAGGCT  700

seq1  ATAGAGCTTTTTTTTTTTTTTCCTCCCTACACTGGGCTAAAATTTGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTTTTTTTTTTTTTTCCTCCCTACACTGGGCTAAAATTTGACTG  750

seq1  TTGGGATAAGACAAACATTTTTACTTTGGGTTAGTTTATAAAACAATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAAGACAAACATTTTTACTTTGGGTTAGTTTATAAAACAATTGG  800

seq1  CTTTTACAAATATGTACACCAAAATATTGGTGTAGAGAAATGAGTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAAATATGTACACCAAAATATTGGTGTAGAGAAATGAGTGGTTT  850

seq1  TGCTTTTACCTGCAAAACCTTATGCTAGAGCAGCTTAAGCCCAGGCCCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTACCTGCAAAACCTTATGCTAGAGCAGCTTAAGCCCAGGCCCGC  900

seq1  GGGTGGGGCCCAAAGCAGGCTGGGTAGGCCTGAAGGCTCGGTCCCACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCCCAAAGCAGGCTGGGTAGGCCTGAAGGCTCGGTCCCACTCT  950

seq1  AGAGC-GCTTCAAGGTCTTCTGGGAACCTACAAATATTCAGCCCACTCTT  999
      ||||| ||||||||||||| | ||||||||||||||||||||||||||||
seq2  AGAGCGGCTTCAAGGTCTTTTTGGAACCTACAAATATTCAGCCCACTCTT  1000

seq1  AGGTAGGCCTAGGGGTAACCTGCCTTTCCCG-AGGGCTGACCTTCTAAG-  1047
        |||||||||||||||||||||||||| || ||||||||||||||||| 
seq2  TAGTAGGCCTAGGGGTAACCTGCCTTTCTCGAAGGGCTGACCTTCTAAGT  1050

seq1  TTCTAAATTGCCATTGCTCCT-AGTGAAACACACTACGGAAGCTTCCTTA  1096
      ||||||| |  || ||||||| || ||| ||| |||||||||||||||||
seq2  TTCTAAAATTGCA-TGCTCCTAAGGGAACCAC-CTACGGAAGCTTCCTTA  1098

seq1  CTAAACAAAG-AACAGAGCCCTGCTT  1121
       | ||||||| ||||||| |||||||
seq2  AT-AACAAAGAAACAGAG-CCTGCTT  1122