BAC Information

Click to search

BAC

Clone NameB6Ng01-020M21
Chromosome6 (Build37)12 (Build37)
Map Location 18,835,442 - 18,835,96863,185,149 - 63,186,203
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020M21.bB6Ng01-020M21.g
ACCDH853496DH853497
length9351,048
definitionDH853496|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M21, 5' end.DH853497|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(63,185,149 - 63,186,203)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaaatccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatactttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattga
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatagtgattctgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcggtgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgctga
gaattcattaatactttggaatcttatctattcatatcatttaatacttt
acatttactaagggtgtaataaacacaaacacacacagaggcacacacac
acacacacacacacacacacacacacacacacagcctgtcacactgttag
gatccatgactaactgaagaatgatactctaattatttattccagcatgc
aagggctccattccatggggatggaaggacacaaacagaattcacagatt
tggtttaaagccagaaaacggattattagggaggggtcggtgatctatat
cttgatgggtgggtcctatctctggaggtctgagtgacgctgagattcag
actactcctgtttcatgccaaggagaggtcatagacctaatcataagctc
gactaactgtccttttgcaagctggagaggggtacatcttgactgaatct
ttttcctgtaaatgacttgcccagttctgggaagtggaaactcaggcctg
atctcccgaactgctagtttgtagcctgtcaaggacttagcctagctcag
gccaattcactcctttcaacacaagtgtattcaatgtatgcattaacaat
aggtatatttcttctctctatgatgagtagaagaatgaaagatctcccta
aaaatcattttttaatgactaaagccaatatggaagggatcattgtcatg
gaatacaggtagccattcattatttttaagggacacaatattgtgtaatt
atcatgaagtaaagagtaaaattgtccttaagaaacacattgttcccttg
tgcagttgtgcattctttccttgtcagttttatacttcatatcacacaga
acacatatgttaaaggaaagtttgactacactgcataaacaataactact
ctgtgctcatctttttcatggaaacaatgatatggtctagttccactttt
gtttctttgtttgtttgtttttggttttcagacaggattttctgtatact
cctggctgttctggacccacttttgtagacacagctggcctcgaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-020M21.b_46_573 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| |||| |||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATTGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGATTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr12_63185149_63186203
seq2: B6Ng01-020M21.g_68_1115 (reverse)

seq1  GAGTTCGAGGCCAGCCTGGTCTAC-AAAGTGAGTTCCAGGACAGCCAGGA  49
      |||||||||||||||   |||||| |||||| | ||||| ||||||||||
seq2  GAGTTCGAGGCCAGCTGTGTCTACAAAAGTG-GGTCCAGAACAGCCAGGA  49

seq1  GTATACAGAGAATCCCTGTCTCGAAAAACCAAAAAACAAAACAAACAAAG  99
      ||||||||| ||| |||||||   |||||||||||   ||||||||||||
seq2  GTATACAGAAAAT-CCTGTCT--GAAAACCAAAAA--CAAACAAACAAAG  94

seq1  AAACAAAAAGTGGAACTAGACCATAATCATTGTTTCCATGAAAAAGATGA  149
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAC-AAAAGTGGAACTAGACCAT-ATCATTGTTTCCATGAAAAAGATGA  142

seq1  GCACAGAGTAGTTATTGTTTATGCAGTGTAGTCAAACTTTCCTTTAACAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGTAGTTATTGTTTATGCAGTGTAGTCAAACTTTCCTTTAACAT  192

seq1  ATGTGTTCTGTGTGATATGAAGTATAAAACTGACAAGGAAAGAATGCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTGTGTGATATGAAGTATAAAACTGACAAGGAAAGAATGCACA  242

seq1  ACTGCACAAGGGAACAATGTGTTTCTTAAGGACAATTTTACTCTTTACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAAGGGAACAATGTGTTTCTTAAGGACAATTTTACTCTTTACTT  292

seq1  CATGATAATTACACAATATTGTGTCCCTTAAAAATAATGAATGGCTACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAATTACACAATATTGTGTCCCTTAAAAATAATGAATGGCTACCT  342

seq1  GTATTCCATGACAATGATCCCTTCCATATTGGCTTTAGTCATTAAAAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCATGACAATGATCCCTTCCATATTGGCTTTAGTCATTAAAAAAT  392

seq1  GATTTTTAGGGAGATCTTTCATTCTTCTACTCATCATAGAGAGAAGAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAGGGAGATCTTTCATTCTTCTACTCATCATAGAGAGAAGAAAT  442

seq1  ATACCTATTGTTAATGCATACATTGAATACACTTGTGTTGAAAGGAGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATTGTTAATGCATACATTGAATACACTTGTGTTGAAAGGAGTGA  492

seq1  ATTGGCCTGAGCTAGGCTAAGTCCTTGACAGGCTACAAACTAGCAGTTCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCTGAGCTAGGCTAAGTCCTTGACAGGCTACAAACTAGCAGTTCG  542

seq1  GGAGATCAGGCCTGAGTTTCCACTTCCCAGAACTGGGCAAGTCATTTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCAGGCCTGAGTTTCCACTTCCCAGAACTGGGCAAGTCATTTACA  592

seq1  GGAAAAAGATTCAGTCAAGATGTACCCCTCTCCAGCTTGCAAAAGGACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGATTCAGTCAAGATGTACCCCTCTCCAGCTTGCAAAAGGACAG  642

seq1  TTAGTCGAGCTTATGATTAGGTCTATGACCTCTCCTTGGCATGAAACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGAGCTTATGATTAGGTCTATGACCTCTCCTTGGCATGAAACAGG  692

seq1  AGTAGTCTGAATCTCAGCGTCACTCAGACCTCCAGAGATAGGACCCACCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTGAATCTCAGCGTCACTCAGACCTCCAGAGATAGGACCCACCC  742

seq1  ATCAAGATATAGATCACCGACCCCTCCCTAATAATCCGTTTTCTGGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATATAGATCACCGACCCCTCCCTAATAATCCGTTTTCTGGCTTT  792

seq1  AAACCAAATCTGTGAATTCTGTTTGTGTCCTTCCATCCCCATGGAATGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAATCTGTGAATTCTGTTTGTGTCCTTCCATCCCCATGGAATGGA  842

seq1  GCCCTTGCATGCTGGAATAAATAATTAGAGTATCATTCTTCAGTTAGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCATGCTGGAATAAATAATTAGAGTATCATTCTTCAGTTAGTCA  892

seq1  TGGATCCTAACAGTGTGACAGGCTGTGTGTGTGTGTGTGTGTGTGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTAACAGTGTGACAGGCTGTGTGTGTGTGTGTGTGTGTGTGTGT  942

seq1  GTGTGTGTGTGTGTGCCTCTGTGTGTGTTTGTGTTTATTACACCCTTAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCCTCTGTGTGTGTTTGTGTTTATTACACCCTTAGT  992

seq1  AAATGTAAAGTATTAAATGATATGAATAGATAAGATTCCAAAGTATTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAGTATTAAATGATATGAATAGATAAGATTCCAAAGTATTAAT  1042

seq1  GAATTC  1055
      ||||||
seq2  GAATTC  1048