BAC Information

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BAC

Clone NameB6Ng01-020N14
Chromosome6 (Build37)15 (Build37)
Map Location 16,249,136 - 16,250,06379,613,685 - 79,613,863
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N14.bB6Ng01-020N14.g
ACCDH853528DH853529
length1,098250
definitionDH853528|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N14, 5' end.DH853529|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,249,136 - 16,250,063)(79,613,685 - 79,613,863)
sequence
gaattcacctaggttgtttgcaggttcccataggcccctttggtcaacaa
ctcaattagatgtacctcattgttggcactggaagcttcatttggcgata
agaaatgtccaattggagctctgtctttccatcattcatttgacaatttc
atttatatcgccttcataatttgtatatacatttggaaggatctactgta
ttagatttccatgcaacccctccaatggcccttagatttagctgttaatc
acccatacttatatactctagtttcccttgctaagtgatatttatctctt
cccccagttttttatatctgtcctctgtttataagtctatagcttattta
tcaaagatttaatagctaatatctacatataagttaatgtatacactgtt
tgtctttctgtgtctgggttacctcactcagaatgattttatttgctata
tctatccatttacctatgaatttcagtttttaaaagttgaataatattct
attatataaatgtaccacatcttcttatccatccatttattaatctaagc
tatttctaatttctggctattttcaataaaacagcaatgaacatggatga
gcaaatatctctgtagtaggaataggcatcctttgggtatattgataggg
taagtgttacatgagaataatatgatgatttttgaaaacatttctaattt
ctatctaaagaaagtaacgagagccactgaggcagcacccttggcgggcc
acagacagccggccaccgtccggaccagaggacaggtagcctggcttggg
aggcggcctcagcctcagcagcagcggtcgccatcttgattccgggactc
cctggaacttagaatttagtctgcacagtgagagtctgcaccacagaagc
tgacagcttctgggaactgccaaagcaacaaagcttctgagaaagccctt
gttttgggccttcttcttcggccaggaggagtccaaaacagatatcctgc
ccaccttcccttgagagagcttgccagcagagatgctctgagcactgaaa
ctcagggagaaattgtctccccggttgctgataacagtacgaatcacc
atgaaattcctatgcaaatggatggagctagaaaataccatcatacactg
ggcactggtggcacacacctttaatcccagcacttgggaggcggaggcag
gtggatttctgagttcaagaccagcctggtctacagagtgagttccagga
cagccaggactatacagagaaaccctgtcttgaaaaaccaaaaagaagag
gaagaagaagaagaagaagaaggaggaggaggaggaggaggaggaggagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16249136_16250063
seq2: B6Ng01-020N14.b_229_1143

seq1  TGGAAGGATCTACTGTATTAGATTTCCATGCAACCCCTCCAATGGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATCTACTGTATTAGATTTCCATGCAACCCCTCCAATGGCCCTT  50

seq1  AGATTTAGCTGTTAATCACCCATACTTATATACTCTAGTTTCCCTTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGCTGTTAATCACCCATACTTATATACTCTAGTTTCCCTTGCTA  100

seq1  AGTGATATTTATCTCTTCCCCCAGTTTTTTATATCTGTCCTCTGTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTTATCTCTTCCCCCAGTTTTTTATATCTGTCCTCTGTTTATA  150

seq1  AGTCTATAGCTTATTTATCAAAGATTTAATAGCTAATATCTACATATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATAGCTTATTTATCAAAGATTTAATAGCTAATATCTACATATAAG  200

seq1  TTAATGTATACACTGTTTGTCTTTCTGTGTCTGGGTTACCTCACTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTATACACTGTTTGTCTTTCTGTGTCTGGGTTACCTCACTCAGAA  250

seq1  TGATTTTATTTGCTATATCTATCCATTTACCTATGAATTTCAGTTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATTTGCTATATCTATCCATTTACCTATGAATTTCAGTTTTTAA  300

seq1  AAGTTGAATAATATTCTATTATATAAATGTACCACATCTTCTTATCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAATAATATTCTATTATATAAATGTACCACATCTTCTTATCCATC  350

seq1  CATTTATTAATCTAAGCTATTTCTAATTTCTGGCTATTTTCAATAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAATCTAAGCTATTTCTAATTTCTGGCTATTTTCAATAAAACA  400

seq1  GCAATGAACATGGATGAGCAAATATCTCTGTAGTAGGAATAGGCATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAACATGGATGAGCAAATATCTCTGTAGTAGGAATAGGCATCCTT  450

seq1  TGGGTATATTGATAGGGTAAGTGTTACATGAGAATAATATGATGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATATTGATAGGGTAAGTGTTACATGAGAATAATATGATGATTTTT  500

seq1  GAAAACATTTCTAATTTCTATCTAAAGAAAGTAACGAGAGCCACTGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTTCTAATTTCTATCTAAAGAAAGTAACGAGAGCCACTGAGGC  550

seq1  AGCACCCTTGGCGGGCCACAGACAGCCGGCCACCGTCCGGACCAGAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTTGGCGGGCCACAGACAGCCGGCCACCGTCCGGACCAGAGGAC  600

seq1  AGGTAGCCTGGCTTGGGAGGCGGCCTCAGCCTCAGCAGCAGCGGTCGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCTGGCTTGGGAGGCGGCCTCAGCCTCAGCAGCAGCGGTCGCCA  650

seq1  TCTTGATTCCGGGACTCCCTGGAACTTAGGAATTTAGTCTGCACAGGTGA  700
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TCTTGATTCCGGGACTCCCTGGAACTTA-GAATTTAGTCTGCACA-GTGA  698

seq1  GAGTCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAAAGCAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGTCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAAAGCAACAA  748

seq1  AGCTTCTGAGAAAGGCCCTGTTTTGGGCCTTCTTCTTCGGCCAGGAGGAG  800
      |||||||||||||| || ||||||||||||||||||||||||||||||| 
seq2  AGCTTCTGAGAAAGCCCTTGTTTTGGGCCTTCTTCTTCGGCCAGGAGGA-  797

seq1  GTCCAAAAACAAGATAT-CTGCGCACCTTCCCTGTGAGAGAGCTTGCCAG  849
      ||||||||   |||||| |||| |||||||||| ||||||||||||||||
seq2  GTCCAAAA--CAGATATCCTGCCCACCTTCCCT-TGAGAGAGCTTGCCAG  844

seq1  CAGAGAGTGCTCTGAGCACTGAAACTCAGGGGAGAGAATCTGTCTCCCAG  899
      |||||| |||||||||||||||||||||||   |||||  |||||||| |
seq2  CAGAGA-TGCTCTGAGCACTGAAACTCAGG---GAGAAATTGTCTCCCCG  890

seq1  GTCTGCTGATAGACAGTAACAGAATCACC  928
      || |||||||| ||||||   ||||||||
seq2  GT-TGCTGATA-ACAGTA--CGAATCACC  915

seq1: chr15_79613685_79613863
seq2: B6Ng01-020N14.g_142_324 (reverse)

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTC  50

seq1  -----TTTTTTGGTTTTCGAGAGACAGGGTTTCTCTGTATAGTCCTGGCT  95
            |||||||||||  | |||||||||||||||||||||||||||||
seq2  CTCTTCTTTTTGGTTTTTCA-AGACAGGGTTTCTCTGTATAGTCCTGGCT  99

seq1  GTCCTGGAACTCATTCTGTAGATCAGGTTGGCCTCGAACTCAGAAATCCA  145
      ||||||||||||| |||||||| |||| ||| || |||||||||||||||
seq2  GTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAAATCCA  149

seq1  CCTGCCTCTGCCTCCCAAGTGCTAGGTTTAAAGG  179
      |||||||| |||||||||||||| || |||||||
seq2  CCTGCCTCCGCCTCCCAAGTGCTGGGATTAAAGG  183