BAC Information

Click to search

BAC

Clone NameB6Ng01-021D07
Chromosome6 (Build37)
Map Location 137,266,419 - 137,376,498
singlet/doubletdoublet
Overlap genePtpro
Upstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg
Downstream geneEps8, Strap, Dera, 9830102E05Rik, Mgst1, Lmo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021D07.bB6Ng01-021D07.g
ACCDH853775DH853776
length1,0841,010
definitionDH853775|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D07, 5' end.DH853776|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,266,419 - 137,267,526)(137,375,479 - 137,376,498)
sequence
gaattcatggcaaacgtgtaatttcttattccttggagggttcctatctg
tttgggtttcgttaagagtaaagttgactctccctcacgcgctccatggg
gcctggaatggccaccttgcctgttctcccagcgtcttccctccctgtaa
ttccttagcccgaagcctattgatgttacttttctgctgtcattttctga
ttctgaatatagttcttggcccttaacacatccaattactttcatctctc
caaatatggcttacttggggtggtcttgcctgacccatttattccctagc
actgtgctttgttcatttcctttataatgcttagctcagtctatagctat
tgattgtcccttgttcaactcacctaaaccctaggttaacacccaggtac
cccctcccacacacacacctccaacacacacagacgacagggcccatgat
tatagcaatcctgtagttcttatacttcatttgattatcacttcttaaaa
gcaggcacggcgagcacagtgagcaggatacgatggcacagcaccgtgtg
cccctctccacggctgtgctaattacatcagtggaaaatttcaggccgtg
ctttattttgaaactgtaattactcatgctattgaatatttttacaagtt
tggggccaagtatgtttattcagttatttgttataattagaaaaataatt
acatcattttctcccttcacgttcctccctccaacccctcccacgtattc
tcataactccctgtcaaatccgtggcctctttgtcttcaactgttacagt
tacatatgtaaatacaaactgttccatctgttattgttggttgtatgtac
atgaattcacggttgactatgtggtatttggttaccaaaattaaggggct
caatcccggagaaaacaaatttctggtttcaatatgccttagttgctcgt
gtctttgtctgggccacgagttttctcttccacgttagtgcatttagcgt
actgctctacacaagtgagctcccattctagacgagattcacagcgctgc
gctggcctcaagacgttctgtttgtgattcatcc
gaattctatttagaaaaaaaaaagtttcactttttatatagaccacagaa
ttttaatcaagaaaaggcctgaagctgattaactcataagcttctcacat
gaatggatggttaatttccactcaccagagtcattctcgaatgacttaac
agttcacgaggtaagaaagcgcccaagctagttaattatctttcctgttt
attatgaaggatttcagaaatagtattggcaaagtattaattttagcatc
agctagagcaaaaacctttctctggattaaatgtagaacttcaaaatata
aaatgaccagagcctttgactacacaaatgtgtttatgtatacattagat
ggtcatatgtttggcatgtcacatgacctcttgcaagctttctgtaagtc
ctaacaatccatccttcctaaggttccatatggtaaggactgatgctttt
cctgacacgggttctgtgataagcatcttcagtggtctccccatccctgc
gcataaacagcatagactgtgcttttcaacacataccatcctcttcctca
acaattccttctatttggaagcatgttatccttttgacctgggtagctga
acttgaaatagccttgagttaactgagactggcatctcagtaaggggttg
cccagatcagactgatcggagggtatgccggtggggagctgtgttgagtg
ttgattgctgtagaagggcctagaccactgtgggtaggacagtgcttctc
tggcttctgtgggttctctggacaggtgattcctcataagccacagcgag
ccagcaagtggaactcctccatgatttttttgtttcaagttcttttgctt
tgtttgagactgggggcggggcagggatatctgtctatgtagccctggct
gccctagaccagccatgtagacaggctggctggaactcacaaagtgctgc
tgcctctgcctctgagttctggagtaaaggtggcgcccttacatgtgctc
tgccctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137266419_137267526
seq2: B6Ng01-021D07.b_44_1127

seq1  GAATTCATGGCAAACGTGTAATTTCTTATTCCTTGGAGGGTTCCTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAAACGTGTAATTTCTTATTCCTTGGAGGGTTCCTATCTG  50

seq1  TTTGGGTTTCGTTAAGAGTAAAGTTGACTCTCCCTCACGCGCTCCATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTCGTTAAGAGTAAAGTTGACTCTCCCTCACGCGCTCCATGGG  100

seq1  GCCTGGAATGGCCACCTTGCCTGTTCTCCCAGCGTCTTCCCTCCCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATGGCCACCTTGCCTGTTCTCCCAGCGTCTTCCCTCCCTGTAA  150

seq1  TTCCTTAGCCCGAAGCCTATTGATGTTACTTTTCTGCTGTCATTTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGCCCGAAGCCTATTGATGTTACTTTTCTGCTGTCATTTTCTGA  200

seq1  TTCTGAATATAGTTCTTGGCCCTTAACACATCCAATTACTTTCATCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATATAGTTCTTGGCCCTTAACACATCCAATTACTTTCATCTCTC  250

seq1  CAAATATGGCTTACTTGGGGTGGTCTTGCCTGACCCATTTATTCCCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGGCTTACTTGGGGTGGTCTTGCCTGACCCATTTATTCCCTAGC  300

seq1  ACTGTGCTTTGTTCATTTCCTTTATAATGCTTAGCTCAGTCTATAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTGTTCATTTCCTTTATAATGCTTAGCTCAGTCTATAGCTAT  350

seq1  TGATTGTCCCTTGTTCAACTCACCTAAACCCTAGGTTAACACCCAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCCCTTGTTCAACTCACCTAAACCCTAGGTTAACACCCAGGTAC  400

seq1  CCCCTCCCACACACACACCTCCAACACACACAGACGACAGGGCCCATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCACACACACACCTCCAACACACACAGACGACAGGGCCCATGAT  450

seq1  TATAGCAATCCTGTAGTTCTTATACTTCATTTGATTATCACTTCTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAATCCTGTAGTTCTTATACTTCATTTGATTATCACTTCTTAAAA  500

seq1  GCAGGCACGGCGAGCACAGTGAGCAGGATACGATGGCACAGCACCGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACGGCGAGCACAGTGAGCAGGATACGATGGCACAGCACCGTGTG  550

seq1  CCCCTCTCCACGGCTGTGCTAATTACATCAGTGGAAAATTTCAGGCCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCACGGCTGTGCTAATTACATCAGTGGAAAATTTCAGGCCGTG  600

seq1  CTTTATTTTGAAACTGTAATTACTCATGCTATTGAATATTTTTACAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGAAACTGTAATTACTCATGCTATTGAATATTTTTACAAGTT  650

seq1  TGGGGCCAAGTATGTTTATTCAGTTATTTGTTATAATTAGAAAAATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAAGTATGTTTATTCAGTTATTTGTTATAATTAGAAAAATAATT  700

seq1  ACATCATTTTCTCCCTTCACGTTCCTCCCTCCAACCCCTCCCACGTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTTTCTCCCTTCACGTTCCTCCCTCCAACCCCTCCCACGTATTC  750

seq1  TCATAACTCCCTGTCAAATCCGTGGCCTCTTTGTCTTCAACTGTTACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTCCCTGTCAAATCCGTGGCCTCTTTGTCTTCAACTGTTACAGT  800

seq1  TACATATGTAAATACAAACTGTTCCATCTGTTATTGTTGGTTGTATGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTAAATACAAACTGTTCCATCTGTTATTGTTGGTTGTATGTAC  850

seq1  ATGAATTCAGGGTTGACTATGTGGTATTTGGTTACCAAAATTAAGGGGCT  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCACGGTTGACTATGTGGTATTTGGTTACCAAAATTAAGGGGCT  900

seq1  CAATCCCGGAGAAAACAAATTTCCTGGTTTCAATATGCCTTAGTTGCCTC  950
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  CAATCCCGGAGAAAACAAATTT-CTGGTTTCAATATGCCTTAGTTG-CTC  948

seq1  GTGTTCTTTGTCTGGGGCCACGAGTTTTCTTCCTTCCACGTTAGTGCATT  1000
      ||| ||||||||| ||||||||||||||||  ||||||||||||||||||
seq2  GTG-TCTTTGTCT-GGGCCACGAGTTTTCT--CTTCCACGTTAGTGCATT  994

seq1  TAGCGTTAACCTTGCTCTATCACAAGTGAGGCTCCCCATTTCTAAGAACG  1050
      ||||||  ||  ||||||| ||||||||| ||||||   |||||   |||
seq2  TAGCGT--AC--TGCTCTA-CACAAGTGA-GCTCCC--ATTCTA--GACG  1034

seq1  AGAATTTCACAGCAGCTGCGCTGGTCCTCAAGACTGTTTCTGTTTGTGAA  1100
      |||  |||||||| |||||||||| |||||||||   |||||||||||| 
seq2  AGA--TTCACAGC-GCTGCGCTGG-CCTCAAGAC--GTTCTGTTTGTGA-  1077

seq1  TTTCATCC  1108
       |||||||
seq2  -TTCATCC  1084

seq1: chr6_137375479_137376498
seq2: B6Ng01-021D07.g_66_1075 (reverse)

seq1  AGCCAGGGCAGGAGCCACATGTAGTGGCGCACACCTTTAGCCCCAGAACT  50
      |||||||||| ||| ||||||||  ||||| |||||||| | ||||||||
seq2  AGCCAGGGCA-GAG-CACATGTAAGGGCGC-CACCTTTA-CTCCAGAACT  46

seq1  CAGGAGGCAGAGGCAGGCAGCACTTTGTGAGTTCCAAGCCAGCCTGGTCT  100
      || |||||||||||| ||||||||||||||||||| ||||||||| ||||
seq2  CA-GAGGCAGAGGCA-GCAGCACTTTGTGAGTTCC-AGCCAGCCT-GTCT  92

seq1  ACATGGCTGGTCTAGGGCAGCCAGGGCTACATAGACAGATATCCCTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTGGTCTAGGGCAGCCAGGGCTACATAGACAGATATCCCTGCCC  142

seq1  CGTCCCCAGTCTCAAAAACAAAAGCAAAAGAACTTGAAGC-AAAAAATCA  199
      || |||||||||||||    |||||||||||||||||| | |||||||||
seq2  CGCCCCCAGTCTCAAA---CAAAGCAAAAGAACTTGAAACAAAAAAATCA  189

seq1  TGGAGGAGTTCCACTTGCTGGCTCGCTGTGGCTTATGAGGAATCACCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGTTCCACTTGCTGGCTCGCTGTGGCTTATGAGGAATCACCTGT  239

seq1  CCAGAGAACCCACAGAAGCCAGAGAAGCACTGTCCTACCCACAGTGGTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACCCACAGAAGCCAGAGAAGCACTGTCCTACCCACAGTGGTCT  289

seq1  AGGCCCTTCTACAGCAATCAACACTCAACACAGCTCCCCACCGGCATACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTCTACAGCAATCAACACTCAACACAGCTCCCCACCGGCATACC  339

seq1  CTCCGATCAGTCTGATCTGGGCAACCCCTTACTGAGATGCCAGTCTCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATCAGTCTGATCTGGGCAACCCCTTACTGAGATGCCAGTCTCAGT  389

seq1  TAACTCAAGGCTATTTCAAGTTCAGCTACCCAGGTCAAAAGGATAACATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAGGCTATTTCAAGTTCAGCTACCCAGGTCAAAAGGATAACATG  439

seq1  CTTCCAAATAGAAGGAATTGTTGAGGAAGAGGATGGTATGTGTTGAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAATAGAAGGAATTGTTGAGGAAGAGGATGGTATGTGTTGAAAAG  489

seq1  CACAGTCTATGCTGTTTATGCGCAGGGATGGGGAGACCACTGAAGATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTATGCTGTTTATGCGCAGGGATGGGGAGACCACTGAAGATGCT  539

seq1  TATCACAGAACCCGTGTCAGGAAAAGCATCAGTCCTTACCATATGGAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGAACCCGTGTCAGGAAAAGCATCAGTCCTTACCATATGGAACC  589

seq1  TTAGGAAGGATGGATTGTTAGGACTTACAGAAAGCTTGCAAGAGGTCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGGATGGATTGTTAGGACTTACAGAAAGCTTGCAAGAGGTCATG  639

seq1  TGACATGCCAAACATATGACCATCTAATGTATACATAAACACATTTGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCCAAACATATGACCATCTAATGTATACATAAACACATTTGTGT  689

seq1  AGTCAAAGGCTCTGGTCATTTTATATTTTGAAGTTCTACATTTAATCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGGCTCTGGTCATTTTATATTTTGAAGTTCTACATTTAATCCAG  739

seq1  AGAAAGGTTTTTGCTCTAGCTGATGCTAAAATTAATACTTTGCCAATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTTTTTGCTCTAGCTGATGCTAAAATTAATACTTTGCCAATACT  789

seq1  ATTTCTGAAATCCTTCATAATAAACAGGAAAGATAATTAACTAGCTTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAATCCTTCATAATAAACAGGAAAGATAATTAACTAGCTTGGG  839

seq1  CGCTTTCTTACCTCGTGAACTGTTAAGTCATTCGAGAATGACTCTGGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCTTACCTCGTGAACTGTTAAGTCATTCGAGAATGACTCTGGTGA  889

seq1  GTGGAAATTAACCATCCATTCATGTGAGAAGCTTATGAGTTAATCAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTAACCATCCATTCATGTGAGAAGCTTATGAGTTAATCAGCTT  939

seq1  CAGGCCTTTTCTTGATTAAAATTCTGTGGTCTATATAAAAAGTGAAACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTTTCTTGATTAAAATTCTGTGGTCTATATAAAAAGTGAAACTT  989

seq1  TTTTTTTTCTAAATAGAATTC  1020
      |||||||||||||||||||||
seq2  TTTTTTTTCTAAATAGAATTC  1010