BAC Information

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BAC

Clone NameB6Ng01-021K21
Chromosome6 (Build37)
Map Location 72,486,357 - 72,673,093
singlet/doubletdoublet
Overlap geneCapg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Upstream geneVps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021K21.bB6Ng01-021K21.g
ACCDH854115DH854116
length916908
definitionDH854115|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K21, 5' end.DH854116|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,486,357 - 72,487,275)(72,672,185 - 72,673,093)
sequence
gaattcatataaagcagatgtggccagatatgatggcacatgccttgcac
acgcctttaatcccgacacttgggaggcagaggcaggcaggtctctgtga
gtttgaggccagcctgcactacaaagttccaggacagcagggttataaag
agaaaccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaggctaggtgtgg
taacaggtgtgattctactgttccttcaagcgagatgagaggcagagaca
agggagatctggaaggatgagccagctagtgtggcataggcacggctgag
gtgagcatactgctgcaaggtcagcctgaattacataaagttcaggctag
cctgggctgcagagtgaggccctgtccaaagaaacaaccaagaaagaaag
tgaccaggaccagtgacctatatatgaaacatttcagtggttaaaaacga
aatgaagagctgggagtggtggcgcatgcctttaatcccagcactttgga
ggtagaggcaggtggatctctgtgagttcgaagccagcctggtctacaga
gtgatttccagtcaagcctggactggtacagagaaaatctctgtcttgaa
aaaccaaagaggtggaggaggaggaaaagaagaagaaatataaaaaacct
aaaggaatacttaaaaaaaaaaaaaaggagatgttttattgttaagtata
tgtagtctgggagtgcacatgggaggccggaagagggtgtaatcacccag
gagctggacttacaagctggtcctctagaagagcagcgagtgctctaaca
gctgagccatctccagtccactaatgctttgtcaagagcattttattttg
atatgcttttgacttaatttgggacactttagaagctccttcattttttt
ttctttcccccttccc
gaattcttaattggaagggagcgtatggtgtctggctctgacaagagcct
gttacctccaaagagccactatacccaaacacaggcaatctgtctgtggt
agtatggtttcagaggtggtgtacaaacgggtgaaatgtttacaaaggct
tcttggaggatagtaatgtaagaaaggctatcaaacacggctgtaggatc
agaaaccagtctatgtgtttgtatttactgccatttgtctgggaatcaag
attttttctctctctctgcaatcaaaagaaattcaagaataaattcctaa
gtgacttggctgcatggaaacctttcatctatgacaaggtctctccagat
gcagtgaaatacctttgctcctttattttgtaaacttgatttcttttgtt
cttgtttttcaaggcagggtttctctgtgtagccctggctgtcccagaac
tcactctgtagaccaggctggcctcgaactcagagatctgcctgcctctg
cctcccaagtgctgggattagtgctccatcactgctaggctttttacaaa
atattggggatttttgcttaccagttgagaatctgaatagcctcttgagt
gtgcagagggctccacctgccagaccagttttcgagtatggcagcagctc
tgggacagcttgcctacggttggttcttggggagcagagctgggtaccac
tgcccagcacagctgggtaccactgcccagcacagcccacacggaagttg
tgcaggggcaaacgcagatgcatgctttggtcccgagctgtgtgtgggct
gcctgaaggcacccctagaaaggttgggactctcgtgttcttgcatggag
agacaaagacgttcttttttgctgcaaatgtgggtgaggggttggacccc
cattttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72486357_72487275
seq2: B6Ng01-021K21.b_42_957

seq1  GAATTCATATAAAGCAGATGTGGCCAGATATGATGGCACATGCCTTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAAAGCAGATGTGGCCAGATATGATGGCACATGCCTTGCAC  50

seq1  ACGCCTTTAATCCCGACACTTGGGAGGCAGAGGCAGGCAGGTCTCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCGACACTTGGGAGGCAGAGGCAGGCAGGTCTCTGTGA  100

seq1  GTTTGAGGCCAGCCTGCACTACAAAGTTCCAGGACAGCAGGGTTATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGCCAGCCTGCACTACAAAGTTCCAGGACAGCAGGGTTATAAAG  150

seq1  AGAAACCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTAGGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTAGGTGTGG  200

seq1  TAACAGGTGTGATTCTACTGTTCCTTCAAGCGAGATGAGAGGCAGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTGTGATTCTACTGTTCCTTCAAGCGAGATGAGAGGCAGAGACA  250

seq1  AGGGAGATCTGGAAGGATGAGCCAGCTAGTGTGGCATAGGCACGGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATCTGGAAGGATGAGCCAGCTAGTGTGGCATAGGCACGGCTGAG  300

seq1  GTGAGCATACTGCTGCAAGGTCAGCCTGAATTACATAAAGTTCAGGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATACTGCTGCAAGGTCAGCCTGAATTACATAAAGTTCAGGCTAG  350

seq1  CCTGGGCTGCAGAGTGAGGCCCTGTCCAAAGAAACAACCAAGAAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTGCAGAGTGAGGCCCTGTCCAAAGAAACAACCAAGAAAGAAAG  400

seq1  TGACCAGGACCAGTGACCTATATATGAAACATTTCAGTGGTTAAAAACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGACCAGTGACCTATATATGAAACATTTCAGTGGTTAAAAACGA  450

seq1  AATGAAGAGCTGGGAGTGGTGGCGCATGCCTTTAATCCCAGCACTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAGCTGGGAGTGGTGGCGCATGCCTTTAATCCCAGCACTTTGGA  500

seq1  GGTAGAGGCAGGTGGATCTCTGTGAGTTCGAAGCCAGCCTGGTCTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGCAGGTGGATCTCTGTGAGTTCGAAGCCAGCCTGGTCTACAGA  550

seq1  GTGATTTCCAGTCAAGCCTGGACTGGTACAGAGAAAATCTCTGTCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCCAGTCAAGCCTGGACTGGTACAGAGAAAATCTCTGTCTTGAA  600

seq1  AAACCAAAGAGGTGGAGGAGGAGGAAAAGAAGAAGAAATATAAAAAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGAGGTGGAGGAGGAGGAAAAGAAGAAGAAATATAAAAAACCT  650

seq1  AAAGGAATACTTAAAAAAAAAAAAAAGGAGATGTTTTATTGTTAAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATACTTAAAAAAAAAAAAAAGGAGATGTTTTATTGTTAAGTATA  700

seq1  TGTAGTCTGGGAGTGCACAT-GGAGGCCGGAAGAGGGTGTAATCACCCAG  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTAGTCTGGGAGTGCACATGGGAGGCCGGAAGAGGGTGTAATCACCCAG  750

seq1  GAGCTGGACTTACAAGCTGGTCCTCTAGAAGAGCAGCGAGTGCTCTAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGACTTACAAGCTGGTCCTCTAGAAGAGCAGCGAGTGCTCTAACA  800

seq1  GCTGAGCCATCTCCAGTCCACTAATGCTTTGTCAAGAGCATTTTATTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTCCAGTCCACTAATGCTTTGTCAAGAGCATTTTATTTTG  850

seq1  ATAATGCTTTTGACTTAATTTGGGACACTTTTAGAAGGCTCCTTCATTTT  899
      || ||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AT-ATGCTTTTGACTTAATTTGGGACAC-TTTAGAA-GCTCCTTCATTTT  897

seq1  TTTTTCCTTTCCCCCTTCCC  919
      ||||| ||||||||||||||
seq2  TTTTT-CTTTCCCCCTTCCC  916

seq1: chr6_72672185_72673093
seq2: B6Ng01-021K21.g_65_972 (reverse)

seq1  CCAAAATGAGGGCTCCAGCCCCTCACCCACATTTGCAGCAATAAAGAACG  50
      |||||||| ||| |||| ||||||||||||||||||||||| ||||||||
seq2  CCAAAATG-GGGGTCCAACCCCTCACCCACATTTGCAGCAAAAAAGAACG  49

seq1  TCTTTGTCTCTCCATGCAAGAACACGAGAGTCCCAACCTTTCTAGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTCTCCATGCAAGAACACGAGAGTCCCAACCTTTCTAGGGGTG  99

seq1  CCTTCAGGCAGCCCACACACAGCTCGGGACCAAAGCATGCATCTGCGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGCAGCCCACACACAGCTCGGGACCAAAGCATGCATCTGCGTTT  149

seq1  GCCCCTGCACAACTTCCGTGTGGGCTGTGCTGGGCAGTGGTACCCAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCACAACTTCCGTGTGGGCTGTGCTGGGCAGTGGTACCCAGCTG  199

seq1  TGCTGGGCAGTGGTACCCAGCTCTGCTCCCCAAGAACCAACCGTAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCAGTGGTACCCAGCTCTGCTCCCCAAGAACCAACCGTAGGCAA  249

seq1  GCTGTCCCAGAGCTGCTGCCATACTCGAAAACTGGTCTGGCAGGTGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCAGAGCTGCTGCCATACTCGAAAACTGGTCTGGCAGGTGGAGC  299

seq1  CCTCTGCACACTCAAGAGGCTATTCAGATTCTCAACTGGTAAGCAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCACACTCAAGAGGCTATTCAGATTCTCAACTGGTAAGCAAAAAT  349

seq1  CCCCAATATTTTGTAAAAAGCCTAGCAGTGATGGAGCACTAATCCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATATTTTGTAAAAAGCCTAGCAGTGATGGAGCACTAATCCCAGCA  399

seq1  CTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGTCT  449

seq1  ACAGAGTGAGTTCTGGGACAGCCAGGGCTACACAGAGAAACCCTGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAGTTCTGGGACAGCCAGGGCTACACAGAGAAACCCTGCCTTG  499

seq1  AAAAACAAGAACAAAAGAAATCAAGTTTACAAAATAAAGGAGCAAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGAACAAAAGAAATCAAGTTTACAAAATAAAGGAGCAAAGGTA  549

seq1  TTTCACTGCATCTGGAGAGACCTTGTCATAGATGAAAGGTTTCCATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGCATCTGGAGAGACCTTGTCATAGATGAAAGGTTTCCATGCAG  599

seq1  CCAAGTCACTTAGGAATTTATTCTTGAATTTCTTTTGATTGCAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCACTTAGGAATTTATTCTTGAATTTCTTTTGATTGCAGAGAGAG  649

seq1  AGAAAAAATCTTGATTCCCAGACAAATGGCAGTAAATACAAACACATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATCTTGATTCCCAGACAAATGGCAGTAAATACAAACACATAGA  699

seq1  CTGGTTTCTGATCCTACAGCCGTGTTTGATAGCCTTTCTTACATTACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTGATCCTACAGCCGTGTTTGATAGCCTTTCTTACATTACTAT  749

seq1  CCTCCAAGAAGCCTTTGTAAACATTTCACCCGTTTGTACACCACCTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGAAGCCTTTGTAAACATTTCACCCGTTTGTACACCACCTCTGA  799

seq1  AACCATACTACCACAGACAGATTGCCTGTGTTTGGGTATAGTGGCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACTACCACAGACAGATTGCCTGTGTTTGGGTATAGTGGCTCTTT  849

seq1  GGAGGTAACAGGCTCTTGTCAGAGCCAGACACCATACGCTCCCTTCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAACAGGCTCTTGTCAGAGCCAGACACCATACGCTCCCTTCCAAT  899

seq1  TAAGAATTC  909
      |||||||||
seq2  TAAGAATTC  908