BAC Information

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BAC

Clone NameB6Ng01-021O15
Chromosome6 (Build37)
Map Location 79,215,865 - 79,330,065
singlet/doubletdoublet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021O15.bB6Ng01-021O15.g
ACCDH854292DH854293
length1,083981
definitionDH854292|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O15, 5' end.DH854293|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,215,865 - 79,216,967)(79,328,945 - 79,330,065)
sequence
gaattctatattgttttatttatttgttttctatctttgattgtgcatgt
ctgtgtttgtgtatgtagctgccctcagagtccagaacttggtgctgtgt
cccttggtgctgttattataagcaagctgccaaggtgggtgcaggaaacc
acatatggattcttgacatgaacaaaccaagtggtgaacagcttatctag
agctacatgaacaatgaagaggtttaaatccttcaaagtagtttatagct
tctatcaactgtcattcttacagtggaggcaatactctttcttctctcct
cggtcttgaaaagaacagtgccttacatttcttacagtttactagacgtt
cccctttatttaagtagctaatgttatgtattttaaaacttaagctgacc
tattgtctagagagcactatctatgtatgcaacactaagtgacatgcttt
gattctctgcgtaatactgtacttacttagtctagattttatcttccacc
ttgtatcaatggtacataactgtcatctactagctacagagcctaattat
gactctggtttatggtgtgtgtctgtgatctaaaagaaaaaataattcac
agtggctcttgcattttattaactacttaacatatatagtgcccttttgt
tatttttctatcattgctcctagcctggatattaaggcatttctgctaag
gtcacctgcactgactcctgggaaccccccttattcctggtctctgagcc
ttccttgagaatttccccaccccccacccaggcagctgcatatttccatt
cattctcctgtgcctcttgagcctctcttctgtctctccccatacctggt
cctgcccccatattcttcttgctctcctctgtcctatccaggcccttccc
tctctccctctgcctcccagactactttgttcccattctaaatgggactc
agcattcttcacttggacttctcttgttatcttcttcgggatgtgggttt
attatgtgttatttctgggccttgattcttgtttttaatagaaattttct
tattacatttcaatgttaccttcctgtttcctc
gaattctccctagatttaggcctccatgtgctataaaattgtctatcatc
tccatgtacctatgaatctatctatgtgtctatgtatttatgtatctatc
tgtctgtctatctatttactcatctatctttacgtatataaaaataaaca
cgttaaacaaatacttatgtgttttctctctgtataaatttttatattca
tatctacctatacaatttacatatctaaacctacatatatatgaagagag
atgtaatttttatgtgtatatgtacgtgtacgtgtgaatgtgtgtgtgcg
ggcgtgtgtgtatgtaagagccagacgtcaatgtccatgtctttctccat
cacactcatatttttatgagacaggtcctctaactgaacccagagctcac
catctgagctggcctgtctggcccagccatagggatcatcctggctcctt
ttttttttttttttttaaagcaactttggttacagaaataggtatctgtg
tttctccttcctgtggatgctcaggattagagtttaggaatgctactttc
acagcaatctcttttccaactgagccatctcacctgtcttgataaatatg
cttatttttagaaccactttaaaaaatgcttggaaggaaaatgttaaagt
cataaattggcagtgatttattgacaatgaaatctagaaatatacaatat
ctaaaattattattcagcttttacttaacataaatacaaatccaaattcc
attactagtttcctttgcgttaatccaactaattcactaaaatatatatg
gtattttactaacactatgataataaaaatctctgaattcatcaaattat
tttttataaatgcatgccattgaaattgtaaagtaataatattttttcaa
tcatattgattgatttgtaatgaatattagcagtttaatcacattaataa
ttctaactgatactcttactttcacttgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79215865_79216967
seq2: B6Ng01-021O15.b_43_1125

seq1  GAATTCTATATTGTTTTATTTATTTGTTTTCTATCTTTGATTGTGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTGTTTTATTTATTTGTTTTCTATCTTTGATTGTGCATGT  50

seq1  CTGTGTTTGTGTATGTAGCTGCCCTCAGAGTCCAGAACTTGGTGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGTGTATGTAGCTGCCCTCAGAGTCCAGAACTTGGTGCTGTGT  100

seq1  CCCTTGGTGCTGTTATTATAAGCAAGCTGCCAAGGTGGGTGCAGGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGCTGTTATTATAAGCAAGCTGCCAAGGTGGGTGCAGGAAACC  150

seq1  ACATATGGATTCTTGACATGAACAAACCAAGTGGTGAACAGCTTATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGATTCTTGACATGAACAAACCAAGTGGTGAACAGCTTATCTAG  200

seq1  AGCTACATGAACAATGAAGAGGTTTAAATCCTTCAAAGTAGTTTATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATGAACAATGAAGAGGTTTAAATCCTTCAAAGTAGTTTATAGCT  250

seq1  TCTATCAACTGTCATTCTTACAGTGGAGGCAATACTCTTTCTTCTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAACTGTCATTCTTACAGTGGAGGCAATACTCTTTCTTCTCTCCT  300

seq1  CGGTCTTGAAAAGAACAGTGCCTTACATTTCTTACAGTTTACTAGACGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTGAAAAGAACAGTGCCTTACATTTCTTACAGTTTACTAGACGTT  350

seq1  CCCCTTTATTTAAGTAGCTAATGTTATGTATTTTAAAACTTAAGCTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTATTTAAGTAGCTAATGTTATGTATTTTAAAACTTAAGCTGACC  400

seq1  TATTGTCTAGAGAGCACTATCTATGTATGCAACACTAAGTGACATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTAGAGAGCACTATCTATGTATGCAACACTAAGTGACATGCTTT  450

seq1  GATTCTCTGCGTAATACTGTACTTACTTAGTCTAGATTTTATCTTCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTGCGTAATACTGTACTTACTTAGTCTAGATTTTATCTTCCACC  500

seq1  TTGTATCAATGGTACATAACTGTCATCTACTAGCTACAGAGCCTAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAATGGTACATAACTGTCATCTACTAGCTACAGAGCCTAATTAT  550

seq1  GACTCTGGTTTATGGTGTGTGTCTGTGATCTAAAAGAAAAAATAATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGTTTATGGTGTGTGTCTGTGATCTAAAAGAAAAAATAATTCAC  600

seq1  AGTGGCTCTTGCATTTTATTAACTACTTAACATATATAGTGCCCTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCTTGCATTTTATTAACTACTTAACATATATAGTGCCCTTTTGT  650

seq1  TATTTTTCTATCATTGCTCCTAGCCTGGATATTAAGGCATTTCTGCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTATCATTGCTCCTAGCCTGGATATTAAGGCATTTCTGCTAAG  700

seq1  GTCACCTGCACTGACTCCTGGGAACCCCCCTTATTCCTGGTCTCTGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGCACTGACTCCTGGGAACCCCCCTTATTCCTGGTCTCTGAGCC  750

seq1  TTCCTTGAGAATTTCCCCACCCCCCACCCAGGCAGCTGCATATTTCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAGAATTTCCCCACCCCCCACCCAGGCAGCTGCATATTTCCATT  800

seq1  CATTCTCCTGTGCCTCTTGAGCCTCTCTTCTGTCTCTCCCCATACCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTGTGCCTCTTGAGCCTCTCTTCTGTCTCTCCCCATACCTGGT  850

seq1  CCTGCCCCCATATTCTTCTTGCTCTCCTCTGTCCTATCCAGGCCCTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCCATATTCTTCTTGCTCTCCTCTGTCCTATCCAGGCCCTTCCC  900

seq1  TCTCTCCCTCTGCCTCCCAAGACTACTTTGTTCCCCATTCTAAATGGGAC  950
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TCTCTCCCTCTGCCTCCC-AGACTACTTTGTT-CCCATTCTAAATGGGAC  948

seq1  TCAAGCA-TCTTCACTTGGACCTTCCTTCTTGTTTATCTTCTTTCGGGAT  999
      || |||| |||||||||||| ||||  ||||| |||||||| ||||||||
seq2  TC-AGCATTCTTCACTTGGA-CTTC--TCTTG-TTATCTTC-TTCGGGAT  992

seq1  GTGGGTTTTATTATGTGTTTATTTCTGGGTCTTTGATTCTTTGTTTTTTA  1049
      ||||| ||||||||||| ||||||||||| | |||||||||   ||||||
seq2  GTGGG-TTTATTATGTG-TTATTTCTGGG-CCTTGATTCTT--GTTTTTA  1037

seq1  TTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCTTTTCCTGGTTT  1099
       |||| ||||||||   ||||||||| ||||||| |    ||||| ||||
seq2  ATAGAAATTTTCTT--ATTACATTTC-AATGTTACC----TTCCT-GTTT  1079

seq1  CCTC  1103
      ||||
seq2  CCTC  1083

seq1: chr6_79328945_79330065
seq2: B6Ng01-021O15.g_69_1049 (reverse)

seq1  TATCAAGTGAAATACTTTAGTTTTATTGAAAAATACACAATAATTTTTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATGCAAAACTCCTTTTGGTATCCTTACTGAAAAACCGTAAGACAAAAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAATTAACTACTTTTCTTTGTATGCAGGTTATCAAAGTTGAAAGTAA  150
                                      ||||||   |||||||||
seq2  --------------------------------TATCAA--GTGAAAGTAA  16

seq1  GAGTAATCAGTTTAAGATTATTAATGTGATTAAACTGCTAATATTTCATT  200
      |||| ||||| |||  ||||||||||||||||||||||||||| ||||||
seq2  GAGT-ATCAG-TTAGAATTATTAATGTGATTAAACTGCTAATA-TTCATT  63

seq1  ACAAATCAATTCAATATGTTTGAAAATATAATTATTTACTTTACAATTTT  250
      ||||||||| |||||||| ||||||| || |||| ||||||||||| |||
seq2  ACAAATCAA-TCAATATGATTGAAAAAAT-ATTA-TTACTTTACAA-TTT  109

seq1  CAATGGCATGCATTTATAAAAAATAATTTGATGAATTCAGAGATTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCATGCATTTATAAAAAATAATTTGATGAATTCAGAGATTTTTAT  159

seq1  TATCATAGTGTTAGTAAAATACCATATATATTTTAGTG-ATTAGTTGGAT  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATCATAGTGTTAGTAAAATACCATATATATTTTAGTGAATTAGTTGGAT  209

seq1  TAACGCAAAGGAAACTAGTAATGGAATTTGGATTTGTATTTATGTTAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCAAAGGAAACTAGTAATGGAATTTGGATTTGTATTTATGTTAAGT  259

seq1  AAAAGCTGAATAATAATTTTAGATATTGTATATTTCTAGATTTCATTGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGAATAATAATTTTAGATATTGTATATTTCTAGATTTCATTGTC  309

seq1  AATAAATCACTGCCAATTTATGACTTTAACATTTTCCTTCCAAGCATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCACTGCCAATTTATGACTTTAACATTTTCCTTCCAAGCATTTT  359

seq1  TTAAAGTGGTTCTAAAAATAAGCATATTTATCAAGACAGGTGAGATGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGGTTCTAAAAATAAGCATATTTATCAAGACAGGTGAGATGGCT  409

seq1  CAGTTGGAAAAGAGATTGCTGTGAAAGTAGCATTCCTAAACTCTAATCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAAAAGAGATTGCTGTGAAAGTAGCATTCCTAAACTCTAATCCT  459

seq1  GAGCATCCACAGGAAGGAGAAACACAGATACCTATTTCTGTAACCAAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCACAGGAAGGAGAAACACAGATACCTATTTCTGTAACCAAAGT  509

seq1  TGCTTTAAAAAAAAAAAAAAAAAAGGAGCCAGGATGATCCCTATGGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAAAAAAAAAAAAAAAAGGAGCCAGGATGATCCCTATGGCTGG  559

seq1  GCCAGACAGGCCAGCTCAGATGGTGAGCTCTGGGTTCAGTTAGAGGACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAGGCCAGCTCAGATGGTGAGCTCTGGGTTCAGTTAGAGGACCT  609

seq1  GTCTCATAAAAATATGAGTGTGATGGAGAAAGACATGGACATTGACGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATAAAAATATGAGTGTGATGGAGAAAGACATGGACATTGACGTCT  659

seq1  GGCTCTTACATACACACACGCCCGCACACACACATTCACACGTACACGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTACATACACACACGCCCGCACACACACATTCACACGTACACGTA  709

seq1  CATATACACATAAAAATTACATCTCTCTTCATATATATGTAGGTTTAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACACATAAAAATTACATCTCTCTTCATATATATGTAGGTTTAGAT  759

seq1  ATGTAAATTGTATAGGTAGATATGAATATAAAAATTTATACAGAGAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATTGTATAGGTAGATATGAATATAAAAATTTATACAGAGAGAAA  809

seq1  ACACATAAGTATTTGTTTAACGTGTTTATTTTTATATACGTAAAGATAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAGTATTTGTTTAACGTGTTTATTTTTATATACGTAAAGATAGA  859

seq1  TGAGTAAATAGATAGACAGACAGATAGATACATAAATACATAGACACATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATAGATAGACAGACAGATAGATACATAAATACATAGACACATA  909

seq1  GATAGATTCATAGGTACATGGAGATGATAGACAATTTTATAGCACATGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTCATAGGTACATGGAGATGATAGACAATTTTATAGCACATGGA  959

seq1  GGCCTAAATCTAGGGAGAATTC  1121
      ||||||||||||||||||||||
seq2  GGCCTAAATCTAGGGAGAATTC  981