BAC Information

Click to search

BAC

Clone NameB6Ng01-023B13
Chromosome6 (Build37)
Map Location 61,048,318 - 61,131,888
singlet/doubletdoublet
Overlap geneLOC100041764
Upstream geneEG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756
Downstream geneC130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023B13.bB6Ng01-023B13.g
ACCDH855116DH855117
length8841,105
definitionDH855116|Mus musculus domesticus DNA, BAC clone: B6Ng01-023B13, 5' end.DH855117|Mus musculus domesticus DNA, BAC clone: B6Ng01-023B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,131,000 - 61,131,888)(61,048,318 - 61,049,432)
sequence
gaattcagcttaaaattaattgaagcaatgttccactgtcacagtccagt
cagcagttatatagaaacacagtttgcttcttcaaaggacataataaatt
tgctaaggtactctggtagacactgacccaacttacatctaagcttcaaa
ttatgaccctgtaattggcacttgtttaaagaaagcacaaagggaaacca
aaacaaactaattattctatagcctagatgaagagtactctaggttgtcc
ccagtaactagatttaaagagtcggtgtcgacataaactcacatagcaac
attctcccaggggctttgaataacatctcttcgtgtaaaataggtgaaca
ttctttgaacagccctcatgggaagggaagaatggagggtgtgtgtttca
tttcagaagaaaagtgctcaactgcaatggtttgaccagtgaaagctgct
gaaagcaagcaggttttctgtcctgtggtcttagtggggacctgaagagg
tagcaggaacagacagctaggactctcagaaatggcagagcaggggttca
tgacctccaagaagcacttctacctgtacacaccggagtctacttcagac
ttccttctttcgttttacagagcaggttccagaaagggggaaaaaaaaag
cagaattgcagaattgcttccagttccaagcagaggggctcagcgtacac
agaagggaaccccacaactctgccatatatagcttttctctcactcgtgg
atactatcccctttgcatcagcaaggcacagcctcctctcatagcaccat
tcacagatccctcggtcgccccttcgcgcacgctccctaggcgctggcac
cgtgtgcgcgagtcctaaaatcaagccaaaggtg
gaattcttattcctgagacaaaatcctaattgcctttgattcgtatttct
taagaaacacgtgaattggatatatttgcttattttacagaaaattgtgt
ggatttttgtttgttttgttttgtttgcaatagtctattagagattaaac
agtgaataagactctgcaagcgttttcatttttagtgactacaacaaagg
atgattattggtgtaggtcaagtcctgatgtcccttgacatggagtgcta
tatataaaactcatcttccaacagggtttgtttgtttgtttttaaaaggt
ggcttttagatttagagtctaccctagtctccaaagcttcctctcttact
agagtaaaaatcaccgaggaggaaagagataaaaggtttgtcacatttat
atgggaaagtctttacattgataggagataaaaggaggaaagtgagttga
agcagtgagttggaggaagcctctgctcccagagacacagaacacaaagc
ttcaaagaaagaaacagaaaaagcagaggctgcgagttcagaaattccaa
aggaatggacttcaatatttttaaatgttacatttgtccaaattttaagc
cttttttttcgtagtgaataaacttgacttttaaggagtccttggtatgc
atagatattgtttgtggcttcaattttaattttagtccaccagaagagaa
tcttgcagcagtacaacttgacccagtgtcttagttaggattctgctgtt
gggaacagacaccatgaccaaggcaactcttagaaggacaacatttaatt
agggctggcttaaaagatcagaagttcagtccattatcatcaagtgggaa
catggcagcatccaggcaggagctgagagttctacatcttcatttttttt
ttttcttttggttttggagacagggtttctctgtatagccctggctgtcc
tgaactcacttgtagaccagactggcctcgaactcagaaatctgcctgct
tctgcctcccagtgctggattaaagtgtgcaccaccacgcccgctcttac
tacttcatatgaagctgctacagaatacttttctttagccgtaggataaa
gatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61131000_61131888
seq2: B6Ng01-023B13.b_47_930 (reverse)

seq1  CACCTTTGGGCTTGAATCTTAGGGACTCGCGCACACGGTGCCAGCGCCTA  50
      ||||||| |||||| || ||| ||||||||||||||||||||||||||||
seq2  CACCTTT-GGCTTG-ATTTTA-GGACTCGCGCACACGGTGCCAGCGCCTA  47

seq1  GGGAGCGTGCGCGAAGGGGCGACCGAGGGATTTGTGAATGGTGCTTCTGA  100
      ||||||||||||||||||||||||||||||| |||||||||||| | |||
seq2  GGGAGCGTGCGCGAAGGGGCGACCGAGGGATCTGTGAATGGTGC-TATGA  96

seq1  GAGGAGGCTGTGCCTTGCTGATGCAAAGGGGCTAGTATCC-CGAGTGAGA  149
      ||||||||||||||||||||||||||||||| |||||||| |||||||| 
seq2  GAGGAGGCTGTGCCTTGCTGATGCAAAGGGGATAGTATCCACGAGTGAG-  145

seq1  AGAAAGGCTATTTATGGCAGAGTTGTGGGGTTCCCTTCTGTGTACGCTGA  199
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTATATATGGCAGAGTTGTGGGGTTCCCTTCTGTGTACGCTGA  195

seq1  GCCCCTCCTGCTTGGAACTGGAAGCAATTCTGCAATTCTGCTTTTTTTTT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCT-CTGCTTGGAACTGGAAGCAATTCTGCAATTCTGCTTTTTTTTT  244

seq1  CCCCCCTTCTGGAACCTGCTCTGTAAAACGAAAGAAGGAAGTCTGAAGTA  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTCTGGAACCTGCTCTGTAAAACGAAAGAAGGAAGTCTGAAGTA  294

seq1  GACTCCGGTGTGTACAGGTAGAAGTGCTTCTTGGAGGTCATGAACCCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGGTGTGTACAGGTAGAAGTGCTTCTTGGAGGTCATGAACCCCTG  344

seq1  CTCTGCCATTTCTGAGAGTCCTAGCTGTCTGTTCCTGCTACCTCTTCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATTTCTGAGAGTCCTAGCTGTCTGTTCCTGCTACCTCTTCAGG  394

seq1  TCCCCACTAAGACCACAGGACAGAAAACCTGCTTGCTTTCAGCAGCTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTAAGACCACAGGACAGAAAACCTGCTTGCTTTCAGCAGCTTTC  444

seq1  ACTGGTCAAACCATTGCAGTTGAGCACTTTTCTTCTGAAATGAAACACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCAAACCATTGCAGTTGAGCACTTTTCTTCTGAAATGAAACACAC  494

seq1  ACCCTCCATTCTTCCCTTCCCATGAGGGCTGTTCAAAGAATGTTCACCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCATTCTTCCCTTCCCATGAGGGCTGTTCAAAGAATGTTCACCTA  544

seq1  TTTTACACGAAGAGATGTTATTCAAAGCCCCTGGGAGAATGTTGCTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACGAAGAGATGTTATTCAAAGCCCCTGGGAGAATGTTGCTATGT  594

seq1  GAGTTTATGTCGACACCGACTCTTTAAATCTAGTTACTGGGGACAACCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATGTCGACACCGACTCTTTAAATCTAGTTACTGGGGACAACCTA  644

seq1  GAGTACTCTTCATCTAGGCTATAGAATAATTAGTTTGTTTTGGTTTCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTCTTCATCTAGGCTATAGAATAATTAGTTTGTTTTGGTTTCCCT  694

seq1  TTGTGCTTTCTTTAAACAAGTGCCAATTACAGGGTCATAATTTGAAGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTCTTTAAACAAGTGCCAATTACAGGGTCATAATTTGAAGCTT  744

seq1  AGATGTAAGTTGGGTCAGTGTCTACCAGAGTACCTTAGCAAATTTATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGTTGGGTCAGTGTCTACCAGAGTACCTTAGCAAATTTATTAT  794

seq1  GTCCTTTGAAGAAGCAAACTGTGTTTCTATATAACTGCTGACTGGACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGAAGAAGCAAACTGTGTTTCTATATAACTGCTGACTGGACTGT  844

seq1  GACAGTGGAACATTGCTTCAATTAATTTTAAGCTGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGAACATTGCTTCAATTAATTTTAAGCTGAATTC  884

seq1: chr6_61048318_61049432
seq2: B6Ng01-023B13.g_67_1171

seq1  GAATTCTTATTCCTGAGACAAAATCCTAATTGCCTTTGATTCGTATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCCTGAGACAAAATCCTAATTGCCTTTGATTCGTATTTCT  50

seq1  TAAGAAACACGTGAATTGGATATATTTGCTTATTTTACAGAAAATTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACACGTGAATTGGATATATTTGCTTATTTTACAGAAAATTGTGT  100

seq1  GGATTTTTGTTTGTTTTGTTTTGTTTGCAATAGTCTATTAGAGATTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGTTTGTTTTGTTTTGTTTGCAATAGTCTATTAGAGATTAAAC  150

seq1  AGTGAATAAGACTCTGCAAGCGTTTTCATTTTTAGTGACTACAACAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAAGACTCTGCAAGCGTTTTCATTTTTAGTGACTACAACAAAGG  200

seq1  ATGATTATTGGTGTAGGTCAAGTCCTGATGTCCCTTGACATGGAGTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATTGGTGTAGGTCAAGTCCTGATGTCCCTTGACATGGAGTGCTA  250

seq1  TATATAAAACTCATCTTCCAACAGGGTTTGTTTGTTTGTTTTTAAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAACTCATCTTCCAACAGGGTTTGTTTGTTTGTTTTTAAAAGGT  300

seq1  GGCTTTTAGATTTAGAGTCTACCCTAGTCTCCAAAGCTTCCTCTCTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAGATTTAGAGTCTACCCTAGTCTCCAAAGCTTCCTCTCTTACT  350

seq1  AGAGTAAAAATCACCGAGGAGGAAAGAGATAAAAGGTTTGTCACATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAAATCACCGAGGAGGAAAGAGATAAAAGGTTTGTCACATTTAT  400

seq1  ATGGGAAAGTCTTTACATTGATAGGAGATAAAAGGAGGAAAGTGAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGTCTTTACATTGATAGGAGATAAAAGGAGGAAAGTGAGTTGA  450

seq1  AGCAGTGAGTTGGAGGAAGCCTCTGCTCCCAGAGACACAGAACACAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAGTTGGAGGAAGCCTCTGCTCCCAGAGACACAGAACACAAAGC  500

seq1  TTCAAAGAAAGAAACAGAAAAAGCAGAGGCTGCGAGTTCAGAAATTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAAGAAACAGAAAAAGCAGAGGCTGCGAGTTCAGAAATTCCAA  550

seq1  AGGAATGGACTTCAATATTTTTAAATGTTACATTTGTCCAAATTTTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGACTTCAATATTTTTAAATGTTACATTTGTCCAAATTTTAAGC  600

seq1  CTTTTTTTTCGTAGTGAATAAACTTGACTTTTAAGGAGTCCTTGGTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTCGTAGTGAATAAACTTGACTTTTAAGGAGTCCTTGGTATGC  650

seq1  ATAGATATTGTTTGTGGCTTCAATTTTAATTTTAGTCCACCAGAAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATTGTTTGTGGCTTCAATTTTAATTTTAGTCCACCAGAAGAGAA  700

seq1  TCTTGCAGCAGTACAACTTGACCCAGTGTCTTAGTTAGGATTCTGCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGCAGTACAACTTGACCCAGTGTCTTAGTTAGGATTCTGCTGTT  750

seq1  GGGAACAGACACCATGACCAAGGCAACTCTTAGAAGGACAACATTTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGACACCATGACCAAGGCAACTCTTAGAAGGACAACATTTAATT  800

seq1  AGGGCTGGCTTAAAAGATCAGAAGTTCAGTCCATTATCATCAAGGTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGGCTGGCTTAAAAGATCAGAAGTTCAGTCCATTATCATCAA-GTGGGA  849

seq1  ACATGGCAGCATCCAGGCAGGAGCTGAGAGTTCTACATCTTCA-TTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACATGGCAGCATCCAGGCAGGAGCTGAGAGTTCTACATCTTCATTTTTTT  899

seq1  TTTTTCTTTTGGTTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGG-TTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  948

seq1  CCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCTGCC  999
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCT-GAACTCAC-TTGTAGACCAGACTGGCCTCGAACTCAGAAATCTGCC  996

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACGCCCG  1049
      ||| |||||||||| |||||| |||||||| |||||||||||||||||| 
seq2  TGCTTCTGCCTCCC-AGTGCT-GGATTAAA-GTGTGCACCACCACGCCC-  1042

seq1  GCTC-TACATCTTCATTTGAAGGCTGCTAACAGAATACTTTTCTTTCAGG  1098
      |||| |||  |||||| |||| |||||| |||||||||||||||||   |
seq2  GCTCTTACTACTTCATATGAA-GCTGCT-ACAGAATACTTTTCTTT--AG  1088

seq1  CAGTAGGATAAAGATCT  1115
      | |||||||||||||||
seq2  CCGTAGGATAAAGATCT  1105