BAC Information

Click to search

BAC

Clone NameB6Ng01-023I18
Chromosome6 (Build37)
Map Location 60,400,170 - 60,401,307
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik
Downstream geneLOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I18.bB6Ng01-023I18.g
ACCDH855436DH855437
length9451,136
definitionDH855436|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I18, 5' end.DH855437|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgcagaagagatgagaacattacatacttacataaaatttagt
tactgaactttatgctagctatatattatacccattgaacaatgtaactt
caaacccctcagaactgcacatctagctatttttcaaacaccaaagtgtg
catgttctgttcaggtaatttccccatattaccatgtgtacaagactctt
acctactttcatttctattaatttcatctggtggttagcatgtagaagga
tgcaaattgattcattcttatctcctccagttgaaccagcactatttgtt
gaaaatgctgtcttttttctacatgatggtttcagctcctttgtcaaaga
gcaagtgaccataggtgtgtgaattcacttttgggtcttcaattctattc
cattgatctacctgtctgtcactgttccaataccatgaagtttttatcac
aattgctctataatacaggttgatttcagggatggtgattttctctagaa
gttcttttattgttgagaatagtattcactctcctgggtcttttgttatt
caagatgaatttgcaaatttgcaaattgctccatgaaggctttagttgaa
attttgatttggattagatttgaatctagaaatttgctgttgacaagatg
gccatttttactatactaatcctgccaatccatgagcatcagcaatcttt
ccatcttctgagaacttctttgatttttttttctcagacacttgaagttc
tttttcttttcttcattttttatagatatttcttcattttacatttcaaa
cactatcctgaaagtctcctataccttcgccatgccctgctcatctaccc
actaccactactttatggccctgacattctccttgtactggggcatataa
tgttttgccagaccaaaggggcctctcttcccattggtgaacgac

gaattcaccacttttcatctgatatctcagtctggtatctcaagttgaag
atgctgacaattattggcttcttggtcctctgatgaaaaatccattaatc
ttgcaatctgcttgaagcagaactatagttacatttaacatggatggtaa
aatatatttgttgtaggaagtcattgacccattggctctttgttacttca
acaaaggtaatccaaagtcagaaaatcatgagtgaatatttcatgatgta
caatggaagagactgggtatttttatgaccttaaacacagtcctaactta
ccttggtcatgtgtccatgagtttggttgctatggtatacaattcctttc
tttccaagaacagctaaagggtttcttgatcactaatatagagtcttgtt
taatgtacatctgccatatattaattatgagaaagggaaagaaacagtaa
tatcttacacaacacagcatcatttgcattattctggcttctcttagggc
tctttagaggaacagaaaagatagaatgaatgcatgctaaaaggcagttt
attaactggcttacgtggggagatcccaaagacctgtttccacagtgaag
aggctaagaacctggtagctactatttgcaaggctactcaattcagtggt
cacaatctgacattgaatggttggaagattccttttgaaaagacattgtt
ttcatgtgaattgtagcctgatttgggttcttatatcactgaagttatca
gccacagcagctacttttcagtaaaatacaaaggcaagaagccaaaaatt
atagctttactctcacactttcattgtgacttcaatacccatactcagta
tgagtatcctcacttttaaaaacctgatgaggaaaacactcgcagttgtt
tctaacactttatcccagagttggctacagatacagttaagttgacactg
tagttcatcatcaccatctccagctccttagcacgtccacatttggtaat
ggcatctcattttattatggttttgaaaacagaaaagcagagccatgttc
aggagaggtctagtatgttagcctcatgttgaaaaaataagggaaaatta
tcagatctagttaggaacctgcacctcagcacggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60400170_60401307
seq2: B6Ng01-023I18.g_66_1201

seq1  GAATTCACCACTTTTCATCTGATATCTCAGTCTGGTATCTCAAGTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTTTTCATCTGATATCTCAGTCTGGTATCTCAAGTTGAAG  50

seq1  ATGCTGACAATTATTGGCTTCTTGGTCCTCTGATGAAAAATCCATTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGACAATTATTGGCTTCTTGGTCCTCTGATGAAAAATCCATTAATC  100

seq1  TTGCAATCTGCTTGAAGCAGAACTATAGTTACATTTAACATGGATGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATCTGCTTGAAGCAGAACTATAGTTACATTTAACATGGATGGTAA  150

seq1  AATATATTTGTTGTAGGAAGTCATTGACCCATTGGCTCTTTGTTACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTGTTGTAGGAAGTCATTGACCCATTGGCTCTTTGTTACTTCA  200

seq1  ACAAAGGTAATCCAAAGTCAGAAAATCATGAGTGAATATTTCATGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTAATCCAAAGTCAGAAAATCATGAGTGAATATTTCATGATGTA  250

seq1  CAATGGAAGAGACTGGGTATTTTTATGACCTTAAACACAGTCCTAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGAGACTGGGTATTTTTATGACCTTAAACACAGTCCTAACTTA  300

seq1  CCTTGGTCATGTGTCCATGAGTTTGGTTGCTATGGTATACAATTCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCATGTGTCCATGAGTTTGGTTGCTATGGTATACAATTCCTTTC  350

seq1  TTTCCAAGAACAGCTAAAGGGTTTCTTGATCACTAATATAGAGTCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGAACAGCTAAAGGGTTTCTTGATCACTAATATAGAGTCTTGTT  400

seq1  TAATGTACATCTGCCATATATTAATTATGAGAAAGGGAAAGAAACAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACATCTGCCATATATTAATTATGAGAAAGGGAAAGAAACAGTAA  450

seq1  TATCTTACACAACACAGCATCATTTGCATTATTCTGGCTTCTCTTAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACACAACACAGCATCATTTGCATTATTCTGGCTTCTCTTAGGGC  500

seq1  TCTTTAGAGGAACAGAAAAGATAGAATGAATGCATGCTAAAAGGCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGGAACAGAAAAGATAGAATGAATGCATGCTAAAAGGCAGTTT  550

seq1  ATTAACTGGCTTACGTGGGGAGATCCCAAAGACCTGTTTCCACAGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGGCTTACGTGGGGAGATCCCAAAGACCTGTTTCCACAGTGAAG  600

seq1  AGGCTAAGAACCTGGTAGCTACTATTTGCAAGGCTACTCAATTCAGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGAACCTGGTAGCTACTATTTGCAAGGCTACTCAATTCAGTGGT  650

seq1  CACAATCTGACATTGAATGGTTGGAAGATTCCTTTTGAAAAGACATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTGACATTGAATGGTTGGAAGATTCCTTTTGAAAAGACATTGTT  700

seq1  TTCATGTGAATTGTAGCCTGATTTGGGTTCTTATATCACTGAAGTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGAATTGTAGCCTGATTTGGGTTCTTATATCACTGAAGTTATCA  750

seq1  GCCACAGCAGCTACTTTTCAGTAAAATACAAAGGCAAGAAGCCAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCAGCTACTTTTCAGTAAAATACAAAGGCAAGAAGCCAAAAATT  800

seq1  ATAGCTTTACTCTCACACTTTCATTGTGACTTCAATACCCATACTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTACTCTCACACTTTCATTGTGACTTCAATACCCATACTCAGTA  850

seq1  TGAGTATCCTCACTTTTAAAAACCTGATGAGGAAAACCACTCGCAGTTGT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGTATCCTCACTTTTAAAAACCTGATGAGGAAAA-CACTCGCAGTTGT  899

seq1  TCCTAACACTTTATCCCAGAGTTGGCTACAGATACAGTTAAGTTGACAAC  950
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTAACACTTTATCCCAGAGTTGGCTACAGATACAGTTAAGTTGAC-AC  948

seq1  TGTAGTTCATCATCACCATCTCCAGCTCCTTAGCACGTCCACATTT-GTA  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTAGTTCATCATCACCATCTCCAGCTCCTTAGCACGTCCACATTTGGTA  998

seq1  ATGGCATCTCATTTTAATTATGGTTTTGAAAACAGAAGAGCAGAGCCATG  1049
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  ATGGCATCTCATTTT-ATTATGGTTTTGAAAACAGAAAAGCAGAGCCATG  1047

seq1  TCCAGGAGAGG-CCAGTATGTCAG-CTCAGTGTGAAAAAAATAAGGAGAA  1097
      | ||||||||| | ||||||| || |||| |||  |||||||||||  ||
seq2  TTCAGGAGAGGTCTAGTATGTTAGCCTCA-TGTTGAAAAAATAAGGGAAA  1096

seq1  ATTATCAGA-CTAGTTAGGAACCTGCACCTCAAGCACAGGGA  1138
      ||||||||| ||||||||||||||||||||| ||||| ||||
seq2  ATTATCAGATCTAGTTAGGAACCTGCACCTC-AGCAC-GGGA  1136


| Home | SequenceCutter | Blast | Download |