BAC Information

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BAC

Clone NameB6Ng01-025L11
Chromosome6 (Build37)
Map Location 113,031,557 - 113,160,778
singlet/doubletdoublet
Overlap geneSetd5, Lhfpl4
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078
Downstream geneMtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025L11.bB6Ng01-025L11.g
ACCDH856969DH856970
length369945
definitionDH856969|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L11, 5' end.DH856970|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,160,410 - 113,160,778)(113,031,557 - 113,032,504)
sequence
gaattcatcaaaagaaaaaaacttttgttttttttttttttttcaaaaga
cactgctaagcaatagcgtgtttgtggtttacgcatgcctgtggtcccct
gcactcaggagactgaggcaggaggatcccaaccttcaaggaagcctggg
ctattttgtgagaccctgcttaactgacatggggccagtgagacagcttg
tacttgccacataaatctgatgatcagaattttgacctccagatttcaca
atagaaggaaagaactgcgtactgcaagttaacctctgacctctatgaat
gtactacagccaactcagccgatgatgatgatgacaatgatgatgatgat
ggtggtggtggtggtggtg
gaattcagggaaattgcaaaaggtaaaaggagtagcctttctttcactta
acgatacgtatagtgaaattgtcttgttgtgtattaagttataaactggg
tagacatgccagtaaccctgagagttggttctgttagaaagcatcccttg
gacgagttcttactcagtacttgaagaaaggagctgtgaggtacacaaaa
gtacagtctatgtttttcttatgagtaagggttctcaaaccccaacccct
tccttccattactgtttccttccttccttccttccttccttccttccttc
cttccttccttcctttctttctttctttctttctttttttcagagtatct
agggaaatgcctgaatgtaaatttccataaagtatctttggtgtcaggaa
agtgatttttttttttaatcttttaaaaatcattggtattctcaaaaccc
taagagtattgctcagttttgtttgtggtgtgtgtgtttgccacttccat
gtctcttctgtcttgtagtatgaggcttcccagagttttcatggcacatt
gaagtgataatcatacatgtatataccagagatgaagaaacctaatttag
ggattacaacacaaaacagcaacaaatcagtggctataagaattctggct
agagaatcaagtttttgatttatactacggaatcgaggggaaatgccagt
tccttgctgctctattttgagaactaggtggaagtatgggaggagccaca
gacctctgcagcaggattttgtgtgagtagaaaagaagatttttgttgaa
atcgccagctgcttatgtcagactgactcccttattatgcctccagtagg
ctgtcaatatggccaacagctagataagtgcggggcaggacaaaggctct
tgcacacaaggaagcagtgttggtgggggaggtccggatgtagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113160410_113160778
seq2: B6Ng01-025L11.b_43_411 (reverse)

seq1  CACCACCACCACCACCACCATCATCATCATCATTGTCATCATCATCATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCACCACCACCATCATCATCATCATTGTCATCATCATCATCG  50

seq1  GCTGAGTTGGCTGTAGTACATTCATAGAGGTCAGAGGTTAACTTGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTGGCTGTAGTACATTCATAGAGGTCAGAGGTTAACTTGCAGTA  100

seq1  CGCAGTTCTTTCCTTCTATTGTGAAATCTGGAGGTCAAAATTCTGATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTCTTTCCTTCTATTGTGAAATCTGGAGGTCAAAATTCTGATCAT  150

seq1  CAGATTTATGTGGCAAGTACAAGCTGTCTCACTGGCCCCATGTCAGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATGTGGCAAGTACAAGCTGTCTCACTGGCCCCATGTCAGTTAA  200

seq1  GCAGGGTCTCACAAAATAGCCCAGGCTTCCTTGAAGGTTGGGATCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCTCACAAAATAGCCCAGGCTTCCTTGAAGGTTGGGATCCTCCT  250

seq1  GCCTCAGTCTCCTGAGTGCAGGGGACCACAGGCATGCGTAAACCACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTCTCCTGAGTGCAGGGGACCACAGGCATGCGTAAACCACAAAC  300

seq1  ACGCTATTGCTTAGCAGTGTCTTTTGAAAAAAAAACAAAAAACAAAAGTT  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACGCTATTGCTTAGCAGTGTCTTTTGAAAAAAAAAAAAAAAACAAAAGTT  350

seq1  TTTTTCTTTTGATGAATTC  369
      |||||||||||||||||||
seq2  TTTTTCTTTTGATGAATTC  369

seq1: chr6_113031557_113032504
seq2: B6Ng01-025L11.g_67_1011

seq1  GAATTCAGGGAAATTGCAAAAGGTAAAAGGAGTAGCCTTTCTTTCACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAAATTGCAAAAGGTAAAAGGAGTAGCCTTTCTTTCACTTA  50

seq1  ACGATACGTATAGTGAAATTGTCTTGTTGTGTATTAAGTTATAAACTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATACGTATAGTGAAATTGTCTTGTTGTGTATTAAGTTATAAACTGGG  100

seq1  TAGACATGCCAGTAACCCTGAGAGTTGGTTCTGTTAGAAAGCATCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGCCAGTAACCCTGAGAGTTGGTTCTGTTAGAAAGCATCCCTTG  150

seq1  GACGAGTTCTTACTCAGTACTTGAAGAAAGGAGCTGTGAGGTACACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGTTCTTACTCAGTACTTGAAGAAAGGAGCTGTGAGGTACACAAAA  200

seq1  GTACAGTCTATGTTTTTCTTATGAGTAAGGGTTCTCAAACCCCAACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCTATGTTTTTCTTATGAGTAAGGGTTCTCAAACCCCAACCCCT  250

seq1  TCCTTCCATTACTGT----TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  296
      |||||||||||||||    |||||||||||||||||||||||||||||||
seq2  TCCTTCCATTACTGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  300

seq1  CTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTTTTTCAGAGTATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTTTTTCAGAGTATCT  350

seq1  AGGGAAATGCCTGAATGTAAATTTCCATAAAGTATCTTTGGTGTCAGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGCCTGAATGTAAATTTCCATAAAGTATCTTTGGTGTCAGGAA  400

seq1  AGTGATTTTTTTTTTTAATCTTTTAAAAATCATTGGTATTCTCAAAACCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTTTTTTTAATCTTTTAAAAATCATTGGTATTCTCAAAACCC  450

seq1  TAAGAGTATTGCTCAGTTTTGTTTGTGGTGTGTGTGTTTGCCACTTCCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTATTGCTCAGTTTTGTTTGTGGTGTGTGTGTTTGCCACTTCCAT  500

seq1  GTCTCTTCTGTCTTGTAGTATGAGGCTTCCCAGAGTTTTCATGGCACATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTGTCTTGTAGTATGAGGCTTCCCAGAGTTTTCATGGCACATT  550

seq1  GAAGTGATAATCATACATGTATATACCAGAGATGAAGAAACCTAATTTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATAATCATACATGTATATACCAGAGATGAAGAAACCTAATTTAG  600

seq1  GGATTACAACACAAAACAGCAACAAATCAGTGGCTATAAGAATTCTGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAACACAAAACAGCAACAAATCAGTGGCTATAAGAATTCTGGCT  650

seq1  AGAGAATCAAGTTTTTGATTTATACTACGGAATCGAGGGGAAATGCCAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCAAGTTTTTGATTTATACTACGGAATCGAGGGGAAATGCCAGT  700

seq1  TCCTTGCTGCTCTA-TTTGAGAACTAGGTGGAAGTATGGGAGGAGCCACA  745
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTGCTCTATTTTGAGAACTAGGTGGAAGTATGGGAGGAGCCACA  750

seq1  GACCTCTGCAGCAGGATTTTGTGTGAGTAGAAAAGGAAGATTTTTGTTTG  795
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  GACCTCTGCAGCAGGATTTTGTGTGAGTAGAAAA-GAAGATTTTTG-TTG  798

seq1  AAATCGCCAGCTGCTTATGTCAGACTGACTCCCTTATTATGCCTCCAGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGCCAGCTGCTTATGTCAGACTGACTCCCTTATTATGCCTCCAGTA  848

seq1  GGCCTGTCAATATGGCCAAACAGCTAGATAAGTGCGGGGCAGGACAAAGG  895
      || |||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GG-CTGTCAATATGGCC-AACAGCTAGATAAGTGCGGGGCAGGACAAA-G  895

seq1  GCTCTTTGCACAGCAGGGAGGCAGTGTTGGTGGGGGAGGGGCCGGAGGTA  945
      |||| ||||||| || ||| ||||||||||||||||| || ||||| |||
seq2  GCTC-TTGCACA-CAAGGAAGCAGTGTTGGTGGGGGA-GGTCCGGATGTA  942

seq1  GGG  948
      | |
seq2  GTG  945