BAC Information

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BAC

Clone NameB6Ng01-026P22
Chromosome6 (Build37)
Map Location 32,253,376 - 32,446,325
singlet/doubletdoublet
Overlap genePlxna4
Upstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026P22.bB6Ng01-026P22.g
ACCDH857865DH857866
length1,0511,097
definitionDH857865|Mus musculus domesticus DNA, BAC clone: B6Ng01-026P22, 5' end.DH857866|Mus musculus domesticus DNA, BAC clone: B6Ng01-026P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,445,267 - 32,446,325)(32,253,376 - 32,254,500)
sequence
gaattcattcagggaacagatggagcaatgtgcagacctgcttgggagct
gctaatggggctaagagccagcctgtgagagagggacaccattgctgaag
tagaagcaaagaagtggcttatggatggatgaaatcagatggtctggaga
acttggcgtgtgacccttgtcctggcatagtgggcaagcttggctcactg
gcagtgtcaggtgtgtttgcccattcagaaatgttctcagccatgggttc
tcagggggattggaagtggctctattgtgtttatctctgatggggttaag
cgtctttctagctctggaagccggagtcctgcctgctttctgttggctgg
ttatttgttgctctttaccttgtcttatttagtttcccttggcaatttcc
aaacactatgtgtttcagactaagggaaatgatgaagaccggaccttgat
ccctcctttccctttgatatgtcttggcattaatgcggaatgatcataag
tgagaacatattctatgttaagtccagaaggctgtgtctatcctaccatc
ttattatgtaagatcacagcaatcacttccttccttgatatccatgcata
ggttgcagtgtggaggaagtgtgagacaggatcaggagagagtggtgggt
gtctagaataattactgagtatctggacaagagaagaatctgctggtaga
gtgccatggtacccagaagaaagcacacatggactgtgtgtgtgcttaac
ctcacactccattttccatgtcctgtcagtggtgccacatctgaaagaat
ttacccattatctgcacatcatcaagaagtacatgtcctgtctccctgcc
ctttcaccactgtgcctccttgggatttctatccatgtactgaactgagt
tctgtagaagccagagaatgtgcagcaatgtttggttctctaacagctcc
agtgtctaattgctgccacttgtttgcttcttctccaagctccctctgac
ccatgtcaatcattctgtcaataggagaatgtgcttaccttttgttcttt
c
gaattcctaagatttacatggatgcttgcttcccagtagatgcttagtaa
gtagttgttggggaatccaatgaataaggggttgagggagctagtaaatt
ggttggagttacagagccaggaaatagcagacatgcatatcatacacagg
tgtcttcaacacatacagccacctgcccacttcattctctatctctgctg
tcatgaaatttcctcaccactgccatcccaccatctcttcttacatttag
agctagcccatggtaagaggtcatctggaattcaagcagagcttcaacct
gcagcacaaagattctctggatcttccgtgtctatagagccattatgtat
cacaatgacaaaatgcacacagaatcttgccctggttgccaagctctcct
tcccctagtgttgaatacaatatattgtaaatggggcaaaggcagcagag
gtcagcatcacaaaaggagcttgggaatgggcaaggatgagtccaaggca
gaccctattgccgtagcctcttactacatgcccaagtgggaatttcttaa
ggcccagcagtggcatcacagagctggtaaggaactcacagaaccaatac
tttctgggtcttaccccaagcttgtgtctaatagctcatctaaatcttta
gtacccagggcctccagagaaggattgtaccttatatttaggcctatgat
tctgcccttggcagcaactgcacaggaatttagaggaatttttagggcct
ttactttaggaaaaacattctcctagttccaaacacaagagagacaaagt
cctctggagattcccatgccaaggcactgagaaaaaaaataagccaacag
gaatgttcagccactagcagtggaaggacagaaagtcaggagaagccata
atgctggtttggatgggagatcatctctagatagcagtcagcacacagag
agcatgcatagaatgaccaactggcatgagaaagatggccaagtccttca
ttgaaggacctgctcaggtttgcgatacagtggagccgaaccaaagggaa
tcaggaaatccagataactttgagcaggccaagctgacttggatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32445267_32446325
seq2: B6Ng01-026P22.b_44_1094 (reverse)

seq1  GAAAGAACCAAAAGCTAGCCACATCTCCCTTATTGACAGAGTGATTGACA  50
      ||||||| |||||| ||  ||||| || | |||||||||| |||||||||
seq2  GAAAGAA-CAAAAGGTAAGCACAT-TCTCCTATTGACAGAATGATTGACA  48

seq1  TGGGTCAGGAGGGAGCCTGAGAGGAAGAAGCAGACAAGTGGCAGCAATTA  100
      ||||||| |||||||| || || ||||||||| |||||||||||||||||
seq2  TGGGTCA-GAGGGAGCTTG-GA-GAAGAAGCAAACAAGTGGCAGCAATTA  95

seq1  GACACTGGAGCTGTTTGAGGACCAATACATTGCTGCACATTCTCTGGGCT  150
      ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||
seq2  GACACTGGAGCTGTTAGAGAACCAA-ACATTGCTGCACATTCTCT-GGCT  143

seq1  TCTACAGAACTCAGTTCAGTACATGGATAGAAATCCCAAGGAGGCACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAACTCAGTTCAGTACATGGATAGAAATCCCAAGGAGGCACAGT  193

seq1  GGTGAAAAGGGCAGGGAGACAGGACATGTACTTCTTGATGATGTGCAGAT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTG-AAAGGGCAGGGAGACAGGACATGTACTTCTTGATGATGTGCAGAT  242

seq1  AATGGGTAAATTCTTTCAGATGTGGCACCACTGACAGGACATGG-AAATG  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATGGGTAAATTCTTTCAGATGTGGCACCACTGACAGGACATGGAAAATG  292

seq1  GAGTGTGAGGTTAAGCACACACACAGTCCATGTGTGCTTTCTTCTGGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAGGTTAAGCACACACACAGTCCATGTGTGCTTTCTTCTGGGTA  342

seq1  CCATGGCACTCTACCAGCAGATTCTTTCTCTTGTCCAGATACTCAGTAAT  399
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATGGCACTCTACCAGCAGATTC-TTCTCTTGTCCAGATACTCAGTAAT  391

seq1  TATTCTAGACACCCACCACTCTCTCCTGATCCTGTCTCACACTTCCTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGACACCCACCACTCTCTCCTGATCCTGTCTCACACTTCCTCCA  441

seq1  CACTGCAACCTATGCATGGATATCAAGGAAGGAAGTGATTGCTGTGATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAACCTATGCATGGATATCAAGGAAGGAAGTGATTGCTGTGATCT  491

seq1  TACATAATAAGATGGTAGGATAGACACAGCCTTCTGGACTTAACATAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATAAGATGGTAGGATAGACACAGCCTTCTGGACTTAACATAGAA  541

seq1  TATGTTCTCACTTATGATCATTCCGCATTAATGCCAAGACATATCAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTCACTTATGATCATTCCGCATTAATGCCAAGACATATCAAAGG  591

seq1  GAAAGGAGGGATCAAGGTCCGGTCTTCATCATTTCCCTTAGTCTGAAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGGATCAAGGTCCGGTCTTCATCATTTCCCTTAGTCTGAAACA  641

seq1  CATAGTGTTTGGAAATTGCCAAGGGAAACTAAATAAGACAAGGTAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTTTGGAAATTGCCAAGGGAAACTAAATAAGACAAGGTAAAGAG  691

seq1  CAACAAATAACCAGCCAACAGAAAGCAGGCAGGACTCCGGCTTCCAGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATAACCAGCCAACAGAAAGCAGGCAGGACTCCGGCTTCCAGAGC  741

seq1  TAGAAAGACGCTTAACCCCATCAGAGATAAACACAATAGAGCCACTTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGACGCTTAACCCCATCAGAGATAAACACAATAGAGCCACTTCCA  791

seq1  ATCCCCCTGAGAACCCATGGCTGAGAACATTTCTGAATGGGCAAACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCTGAGAACCCATGGCTGAGAACATTTCTGAATGGGCAAACACAC  841

seq1  CTGACACTGCCAGTGAGCCAAGCTTGCCCACTATGCCAGGACAAGGGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTGCCAGTGAGCCAAGCTTGCCCACTATGCCAGGACAAGGGTCA  891

seq1  CACGCCAAGTTCTCCAGACCATCTGATTTCATCCATCCATAAGCCACTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCAAGTTCTCCAGACCATCTGATTTCATCCATCCATAAGCCACTTC  941

seq1  TTTGCTTCTACTTCAGCAATGGTGTCCCTCTCTCACAGGCTGGCTCTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTACTTCAGCAATGGTGTCCCTCTCTCACAGGCTGGCTCTTAG  991

seq1  CCCCATTAGCAGCTCCCAAGCAGGTCTGCACATTGCTCCATCTGTTCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTAGCAGCTCCCAAGCAGGTCTGCACATTGCTCCATCTGTTCCCT  1041

seq1  GAATGAATTC  1059
      ||||||||||
seq2  GAATGAATTC  1051

seq1: chr6_32253376_32254500
seq2: B6Ng01-026P22.g_70_1166

seq1  GAATTCCTAAGATTTACATGGATGCTTGCTTCCCAGTAGATGCTTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGATTTACATGGATGCTTGCTTCCCAGTAGATGCTTAGTAA  50

seq1  GTAGTTGTTGGGGAATCCAATGAATAAGGGGTTGAGGGAGCTAGTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTTGGGGAATCCAATGAATAAGGGGTTGAGGGAGCTAGTAAATT  100

seq1  GGTTGGAGTTACAGAGCCAGGAAATAGCAGACATGCATATCATACACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGTTACAGAGCCAGGAAATAGCAGACATGCATATCATACACAGG  150

seq1  TGTCTTCAACACATACAGCCACCTGCCCACTTCATTCTCTATCTCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAACACATACAGCCACCTGCCCACTTCATTCTCTATCTCTGCTG  200

seq1  TCATGAAATTTCCTCACCACTGCCATCCCACCATCTCTTCTTACATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATTTCCTCACCACTGCCATCCCACCATCTCTTCTTACATTTAG  250

seq1  AGCTAGCCCATGGTAAGAGGTCATCTGGAATTCAAGCAGAGCTTCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCCCATGGTAAGAGGTCATCTGGAATTCAAGCAGAGCTTCAACCT  300

seq1  GCAGCACAAAGATTCTCTGGATCTTCCGTGTCTATAGAGCCATTATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACAAAGATTCTCTGGATCTTCCGTGTCTATAGAGCCATTATGTAT  350

seq1  CACAATGACAAAATGCACACAGAATCTTGCCCTGGTTGCCAAGCTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACAAAATGCACACAGAATCTTGCCCTGGTTGCCAAGCTCTCCT  400

seq1  TCCCCTAGTGTTGAATACAATATATTGTAAATGGGGCAAAGGCAGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGTGTTGAATACAATATATTGTAAATGGGGCAAAGGCAGCAGAG  450

seq1  GTCAGCATCACAAAAGGAGCTTGGGAATGGGCAAGGATGAGTCCAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATCACAAAAGGAGCTTGGGAATGGGCAAGGATGAGTCCAAGGCA  500

seq1  GACCCTATTGCCGTAGCCTCTTACTACATGCCCAAGTGGGAATTTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTATTGCCGTAGCCTCTTACTACATGCCCAAGTGGGAATTTCTTAA  550

seq1  GGCCCAGCAGTGGCATCACAGAGCTGGTAAGGAACTCACAGAACCAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCAGTGGCATCACAGAGCTGGTAAGGAACTCACAGAACCAATAC  600

seq1  TTTCTGGGTCTTACCCCAAGCTTGTGTCTAATAGCTCATCTAAATCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTCTTACCCCAAGCTTGTGTCTAATAGCTCATCTAAATCTTTA  650

seq1  GTACCCAGGGCCTCCAGAGAAGGATTGTACCTTATATTTAGGCCTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGGGCCTCCAGAGAAGGATTGTACCTTATATTTAGGCCTATGAT  700

seq1  TCTGCCCTTGGCAGCAACTGCACAGGAATTTAGAGGAATTTTTAGGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTGGCAGCAACTGCACAGGAATTTAGAGGAATTTTTAGGGCCT  750

seq1  TTACTTTAGGAAAAACATTCTCCTAGTTCCAAACACAAGAGAGACAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAGGAAAAACATTCTCCTAGTTCCAAACACAAGAGAGACAAAGT  800

seq1  CCTCTGGAGATTCCCATGCCAAGGCACTGAGAAAAAAAAATAAGCCAACA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCTGGAGATTCCCATGCCAAGGCACTGAG-AAAAAAAATAAGCCAACA  849

seq1  GGGAATGTTCAGGCCACTAGGCAGTGGAAGGAACAAGAAAGTCAGGAAGA  900
       |||||||||| ||||||| ||||||||||||   ||||||||||| |||
seq2  -GGAATGTTCA-GCCACTA-GCAGTGGAAGGA--CAGAAAGTCAGG-AGA  893

seq1  AGCCATAATGCTGGTTTTGGATGGGAGATCATCTCTAGATAGGCAGTCAG  950
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  AGCCATAATGCTGG-TTTGGATGGGAGATCATCTCTAGATA-GCAGTCAG  941

seq1  CAACACAAGAAGGAG-GCATGCATAG-ATGACCAACTGGGCATGAG-AAG  997
      | |||||     ||| |||||||||| |||||||||| |||||||| |||
seq2  C-ACACA-----GAGAGCATGCATAGAATGACCAACT-GGCATGAGAAAG  984

seq1  ATGGCCAAGGTCCTTCATCTGGAAGGAACTGCACAAGTTTAGCGATACAG  1047
      |||||||| ||||||||  | |||||| |||| || |||| |||||||||
seq2  ATGGCCAA-GTCCTTCA--TTGAAGGACCTGCTCAGGTTT-GCGATACAG  1030

seq1  TGGAGGCCGACACAAAGGGAATCAGGAGAAAATCACAGGATGACTTTGAG  1097
      |||| |||||  ||||||||||||||   ||||| || ||| ||||||||
seq2  TGGA-GCCGAACCAAAGGGAATCAGG---AAATC-CA-GATAACTTTGAG  1074

seq1  CAGGGCCCAAGTCTAGAACTTGGATTTT  1125
      ||||  ||||| ||   |||||||||||
seq2  CAGG--CCAAG-CT--GACTTGGATTTT  1097