BAC Information

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BAC

Clone NameB6Ng01-028D19
Chromosome15 (Build37)6 (Build37)
Map Location 98,836,810 - 98,837,19270,907,567 - 70,908,504
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSenp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092
Downstream geneTuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028D19.bB6Ng01-028D19.g
ACCDH858770DH858771
length991935
definitionDH858770|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D19, 5' end.DH858771|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,836,810 - 98,837,192)(70,907,567 - 70,908,504)
sequence
gaattctcaattctgaacatctatgctccaaatgcaagggcacccacatt
cataaaagaaactttacttaagctcaaagcacacattgaaccccacatag
taatagtaggagactttaacaccccactcttatcagtggacagatcatgg
aaacacaaactaaacagagacacagtaaaactaacagaagtgatggacca
aatgtttttaacagatatctatacaacattttatcctaaaacaaaagaat
atgccttcttctcagcacctcatagtaccttctccaaaattgaccgtata
atcagtcacaaaactgtcctcaacagatacaagaatattgaaataatccc
atgcatcctatcagaacaccacggactaaggcttgtcttcaataacaaca
aaaccaacagaaagcccacatatacatggaagctgagcaatgccctaact
caatgataacttggtcaaggaagaaataaagacgttttagaatttaatga
aaatgaaggcacaacatacccaaacttatgagacgtaatgaaagcagcgc
taagaggaaaactccaaaaagtaattgaagtgagcatacactagcagctt
aacagcacacctgaaagttctaggaaaaaaaaaaaaagaagaagaagaag
caaatacactcaagaggaatagactgaaggaaataatcaaactcagggtt
gaaatcaaccaagtagaaacaaaaagaactatacaaagaatcaacaaggg
ctggagagatggctcagtggttaagagcactgactgctctttcagaggtc
ctgagttcaattcccagcaaccacatggtggctcacaactatctgtcatg
ggatctgatgccctcttctggtgtgtctgaagacagctatagtgtactca
cataaaataagcaaataaatcttaaaaaaaagttaaaaaattaacaaaac
aggagcagttctttgagaaaatctttcctccctccctcctt
gaattcctaaggatcgatctccctttgtgggctaactgaggtttgggtaa
gttaagatacgagcaccccgaattggcttcctgctagtctcaatcctgta
ccttgagtgaagaagactgcatagggctgggttctgagtactcccttacc
tggcagagggaggtggaagaggagtgaagcttaccaagaaacagattctt
gcttgaggcttcttgaatgaagccagagcggttgtattgggggatggaac
ccagggtctcagatatgcaaaggattagctctaccattgaattacactac
tctgtagaattcactctggagcagttttctagtgctgatgctgtaaagtg
caaagtacatttaaaaagttaatgtgattaggcataccttatcatttagg
aggtagagactggaggatcagagagttcaaggtcagcttcgtagactttc
tcttaaatctcacattctgtgtatgttttacaacacattttcatttggat
acatcaggtatcttgatgatagccattagtgcccggtggtgacacttgta
caggacgtgcagtttttgacgatgcaacttcctgacttagtctctaaacc
acccaagattattatatcagttgtcacatgtattcctttgaactttaaaa
agttcaaaaaatattgtatctgggaaagctttttaaaaaactaccaaatg
aagtggacatttcgggatatgtcagtaggactcagtgggcagtgatggct
tgaaccaagtatttggaggttgggggtggagctcaaaaatacagcacttg
cctggtatattgagatcttgggtttaccctcttgcactgggagaggatga
agaaagatagtgataccaagatggctcaatagacctatccagatagtaac
agattcattctctctctctctgtggtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98836810_98837192
seq2: B6Ng01-028D19.b_795_1038

seq1  GGGCTGGTGAGATGGCTCAGGGGTTAAGAGCACCGACTGCTCTTCCAAAG  50
      ||||||| |||||||||||| |||||||||||| |||||||||| || ||
seq2  GGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTTCAGAG  50

seq1  GTCCTGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCATCCGTA  100
      ||||||||||||| |||||||||||| ||||||||||||||| ||| || 
seq2  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACTATCTGTC  100

seq1  ACGAAATTGGATG-CCTCTTCTGGAGTGTCT-AAGACAGCTACAGTATAC  148
      | |  ||  |||| |||||||||| |||||| |||||||||| ||| |||
seq2  ATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTATAGTGTAC  150

seq1  TTACATATAAT----AAATAAATTAAAAAAAAAAGAATTGATGAACCCTC  194
      | ||||| |||    ||||||||   |||||||||               
seq2  TCACATAAAATAAGCAAATAAATCTTAAAAAAAAG---------------  185

seq1  CCCCAATAAAAGATGATTCCTACAAAAATAAATAAATAAATAAATAAAGC  244
            ||||| || |     ||||||    |  | |   |       | 
seq2  -----TTAAAAAATTA-----ACAAAACAGGAGCAGTTCTT------TGA  219

seq1  AAAAATTTTCGTTTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTTTTTTT  294
       ||||| ||  |  ||| ||| |||||                       
seq2  GAAAATCTT--TCCTCCCTCCCTCCTT-----------------------  244

seq1  TTTTTCCCTGTCTCTTTTTTTTCTGGAAGCTGGCTTGACCCCAAGTATAC  344
                                                        
seq2  --------------------------------------------------  244

seq1  TTTTCTGCTACTTTGGCCTCCTTTCCTCCCTCCCTCCTT  383
                                             
seq2  ---------------------------------------  244

seq1: chr6_70907567_70908504
seq2: B6Ng01-028D19.g_67_1001

seq1  GAATTCCTAAGGATCGATCTCCCTTTGTGGGCTAACTGAGGTTTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGGATCGATCTCCCTTTGTGGGCTAACTGAGGTTTGGGTAA  50

seq1  GTTAAGATACGAGCACCCCGAATTGGCTTCCTGCTAGTCTCAATCCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATACGAGCACCCCGAATTGGCTTCCTGCTAGTCTCAATCCTGTA  100

seq1  CCTTGAGTGAAGAAGACTGCATAGGGCTGGGTTCTGAGTACTCCCTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTGAAGAAGACTGCATAGGGCTGGGTTCTGAGTACTCCCTTACC  150

seq1  TGGCAGAGGGAGGTGGAAGAGGAGTGAAGCTTACCAAGAAACAGATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGGGAGGTGGAAGAGGAGTGAAGCTTACCAAGAAACAGATTCTT  200

seq1  GCTTGAGGCTTCTTGAATGAAGCCAGAGCGGTTGTATTGGGGGATGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGCTTCTTGAATGAAGCCAGAGCGGTTGTATTGGGGGATGGAAC  250

seq1  CCAGGGTCTCAGATATGCAAAGGATTAGCTCTACCATTGAATTACACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTCAGATATGCAAAGGATTAGCTCTACCATTGAATTACACTAC  300

seq1  TCTGTAGAATTCACTCTGGAGCAGTTTTCTAGTGCTGATGCTGTAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGAATTCACTCTGGAGCAGTTTTCTAGTGCTGATGCTGTAAAGTG  350

seq1  CAAAGTACATTTAAAAAGTTAATGTGATTAGGCATACCTTATCATTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACATTTAAAAAGTTAATGTGATTAGGCATACCTTATCATTTAGG  400

seq1  AGGTAGAGACTGGAGGATCAGAGAGTTCAAGGTCAGCTTCGTAGACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGACTGGAGGATCAGAGAGTTCAAGGTCAGCTTCGTAGACTTTC  450

seq1  TCTTAAATCTCACATTCTGTGTATGTTTTACAACACATTTTCATTTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATCTCACATTCTGTGTATGTTTTACAACACATTTTCATTTGGAT  500

seq1  ACATCAGGTATCTTGATGATAGCCATTAGTGCCCGGTGGTGACACTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGTATCTTGATGATAGCCATTAGTGCCCGGTGGTGACACTTGTA  550

seq1  CAGGACGTGCAGTTTTTGACGATGCAACTTCCTGACTTAGTCTCTAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGTGCAGTTTTTGACGATGCAACTTCCTGACTTAGTCTCTAAACC  600

seq1  ACCCAAGATTATTATATCAGTTGTCACATGTATTCCTTTGAACTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGATTATTATATCAGTTGTCACATGTATTCCTTTGAACTTTAAAA  650

seq1  AGTTCAAAAAATATTGTATCTGGGAAAGCTTTTTAAAAAACTACCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAAAAATATTGTATCTGGGAAAGCTTTTTAAAAAACTACCAAATG  700

seq1  AAGTGGACATTTCGGGATATGTCAGTAGGACTCAGTGGGCAGTGATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGACATTTCGGGATATGTCAGTAGGACTCAGTGGGCAGTGATGGCT  750

seq1  TGAACCAAGTATTTGGAGGTTGGGGGTGGAGCTCAAAAAATACAGCACTT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAACCAAGTATTTGGAGGTTGGGGGTGGAGCTC-AAAAATACAGCACTT  799

seq1  GCCTGGTATATTGAGATCTTGGGTTTACCCTCTTGCACTGGGAGAGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTATATTGAGATCTTGGGTTTACCCTCTTGCACTGGGAGAGGATG  849

seq1  AAGAAAAGATAGTGATACCAAGATGGCTCAATAGACCTATCCAGATAGTT  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAG-AAAGATAGTGATACCAAGATGGCTCAATAGACCTATCCAGATAGTA  898

seq1  ACAGATTCATTCTCTCTCTCTCTGTGTGTGTGTGTGTG  938
      |||||||||||||||||||||||||| |||||||||||
seq2  ACAGATTCATTCTCTCTCTCTCTGTG-GTGTGTGTGTG  935