BAC Information

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BAC

Clone NameB6Ng01-028G06
Chromosome6 (Build37)
Map Location 30,933,782 - 31,037,559
singlet/doubletdoublet
Overlap genenone
Upstream gene1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
Downstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G06.bB6Ng01-028G06.g
ACCDH858882DH858883
length912779
definitionDH858882|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G06, 5' end.DH858883|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,036,647 - 31,037,559)(30,933,782 - 30,934,559)
sequence
gaattcagtcctctgcttccaggacaagcccagcctgcacttggggatcc
ttgggtgaccgttcaaccgtgagtattttttttgaagctcactgattctt
gcttaaaaacttataaatggcatttcatcaaaggaagagcttcaaagaac
tatctttgctggttgtcgtgtgtgtaacacatttcacatttactatgaag
aggactctgtgtgtgatcctgactacagaagcacacatgacctacagata
accatgggagctaagaattaagatttttttgtttgtttttatagcatata
cataaaaatgaagttgtagttttattatttaaagcgaaacgtgaggtaga
tccgtaagatgcacatttgaggaagtgacatgtctgtgtgcagagacttg
tgattcctggtgcttttctttctcaccagtgctagtaaataaacctcaga
agagaacaaagaaagtgctttggtcccgtgtaagagcagacttagagaag
atagccctgaagatgtgtatgctactctctgggttagctgtgctgactgc
ctcctcctgatcccatgtccagatcatatccttaattagtgtaagggatg
cttgttaggtgacggctgtgggcgttcttactctcccaccaaggggctga
gtagagggtacagtctattgggtcatgtctgtttagtatactgttatgtc
ctaacgctgcagagttagagttatcaatctgttctagattctagccctcc
ctccccaccccccaccccaagatgctgatagaagccacgaatcctttacc
acgtcattacacttttgcttgcacatggaggcatccacagaaatggagac
ctctctccagatgcagcaggtataggaggctgggttgcactctcaggggg
ttgggggggggg
gaattctagccagatctggagacatgtggcaaaagaatatgtcggttttt
taaaaagaaaaatgttgattggcttttcttctatttaatataattacatg
tttattgtaggaaattttaggaaatacaattgaggttttaaaaattattc
cccagttccatcacccagagacaatcaattggatgtgcataatttaactt
ttaacaaaatgttgcttatgcttcataatttcattaaatcactcaataga
tttttgagatgtttcctgttactaaatacacgaacatgacatgattacac
cttttaaaaatagcaattagttcatggttaaaattggtatttagttagtg
agaaagagatttctttgggagaaagtttatatcattgtaacagtaaattg
agtcttcttttaagactatggtcggtcatttaactctgtgttgccaaagt
caatgttaccatttttatcataagcatctacaccatgatttgaaagttta
tttcttttactttgattttttttttattttttaaagttaacacacaaaga
tacacatttgtttatggagtttttatacctaggtgttatttttcttttgt
cgttatctgtctctctctagctgtcttccctcatcccctcactcctcgct
ttctgtttctctacaaatactctctgctttcatgtaatatggatttcatt
tctctgtcccacttaagatttcttcctctcctgttcaccccccccccttt
tctacacagagagggggaggggggagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_31036647_31037559
seq2: B6Ng01-028G06.b_45_956 (reverse)

seq1  CCCCCCCCCCAACCCCCTGAGAGTGCAACCCAGCCTCCTATACCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCAACCCCCTGAGAGTGCAACCCAGCCTCCTATACCTGCTGC  50

seq1  ATCTGGAGAGGGGTCTCCATTTCTGTGGATGCCTCCATGTGCAAGCAAAA  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGAGAGGTCTCCATTTCTGTGGATGCCTCCATGTGCAAGCAAAA  100

seq1  GTGTAATGACGTGGTTAAAGGATTCGTGGCTTCTATCAGCATCTTGGGGT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTAATGACGTGG-TAAAGGATTCGTGGCTTCTATCAGCATCTTGGGGT  149

seq1  GGGGGGTGGGGAGGGAGGGCTAGAATCTAGAACAGATTGATAACTCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGGAGGGAGGGCTAGAATCTAGAACAGATTGATAACTCTAAC  199

seq1  TCTGCAGCGTTAGGACATAACAGTATACTAAACAGACATGACCCAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCGTTAGGACATAACAGTATACTAAACAGACATGACCCAATAGA  249

seq1  CTGTACCCTCTACTCAGCCCCTTGGTGGGAGAGTAAGAACGCCCACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCTCTACTCAGCCCCTTGGTGGGAGAGTAAGAACGCCCACAGCC  299

seq1  GTCACCTAACAAGCATCCCTTACACTAATTAAGGATATGATCTGGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTAACAAGCATCCCTTACACTAATTAAGGATATGATCTGGACATG  349

seq1  GGATCAGGAGGAGGCAGTCAGCACAGCTAACCCAGAGAGTAGCATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGAGGAGGCAGTCAGCACAGCTAACCCAGAGAGTAGCATACACA  399

seq1  TCTTCAGGGCTATCTTCTCTAAGTCTGCTCTTACACGGGACCAAAGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGGCTATCTTCTCTAAGTCTGCTCTTACACGGGACCAAAGCACT  449

seq1  TTCTTTGTTCTCTTCTGAGGTTTATTTACTAGCACTGGTGAGAAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTCTCTTCTGAGGTTTATTTACTAGCACTGGTGAGAAAGAAAA  499

seq1  GCACCAGGAATCACAAGTCTCTGCACACAGACATGTCACTTCCTCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGAATCACAAGTCTCTGCACACAGACATGTCACTTCCTCAAATG  549

seq1  TGCATCTTACGGATCTACCTCACGTTTCGCTTTAAATAATAAAACTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTACGGATCTACCTCACGTTTCGCTTTAAATAATAAAACTACAA  599

seq1  CTTCATTTTTATGTATATGCTATAAAAACAAACAAAAAAATCTTAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTTATGTATATGCTATAAAAACAAACAAAAAAATCTTAATTCT  649

seq1  TAGCTCCCATGGTTATCTGTAGGTCATGTGTGCTTCTGTAGTCAGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCATGGTTATCTGTAGGTCATGTGTGCTTCTGTAGTCAGGATCA  699

seq1  CACACAGAGTCCTCTTCATAGTAAATGTGAAATGTGTTACACACACGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGTCCTCTTCATAGTAAATGTGAAATGTGTTACACACACGACA  749

seq1  ACCAGCAAAGATAGTTCTTTGAAGCTCTTCCTTTGATGAAATGCCATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAAGATAGTTCTTTGAAGCTCTTCCTTTGATGAAATGCCATTTA  799

seq1  TAAGTTTTTAAGCAAGAATCAGTGAGCTTCAAAAAAAATACTCACGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTAAGCAAGAATCAGTGAGCTTCAAAAAAAATACTCACGGTTG  849

seq1  AACGGTCACCCAAGGATCCCCAAGTGCAGGCTGGGCTTGTCCTGGAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCACCCAAGGATCCCCAAGTGCAGGCTGGGCTTGTCCTGGAAGCA  899

seq1  GAGGACTGAATTC  913
      |||||||||||||
seq2  GAGGACTGAATTC  912

seq1: chr6_30933782_30934559
seq2: B6Ng01-028G06.g_66_844

seq1  GAATTCTAGCCAGATCTGGAGACATGTGGCAAAAGAATATGTCGGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCAGATCTGGAGACATGTGGCAAAAGAATATGTCGGTTTTT  50

seq1  TAAAAAGAAAAATGTTGATTGGCTTTTCTTCTATTTAATATAATTACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAAATGTTGATTGGCTTTTCTTCTATTTAATATAATTACATG  100

seq1  TTTATTGTAGGAAATTTTAGGAAATACAATTGAGGTTTTAAAAATTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTAGGAAATTTTAGGAAATACAATTGAGGTTTTAAAAATTATTC  150

seq1  CCCAGTTCCATCACCCAGAGACAATCAATTGGATGTGCATAATTTAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCCATCACCCAGAGACAATCAATTGGATGTGCATAATTTAACTT  200

seq1  TTAACAAAATGTTGCTTATGCTTCATAATTTCATTAAATCACTCAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAATGTTGCTTATGCTTCATAATTTCATTAAATCACTCAATAGA  250

seq1  TTTTTGAGATGTTTCCTGTTACTAAATACACGAACATGACATGATTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGATGTTTCCTGTTACTAAATACACGAACATGACATGATTACAC  300

seq1  CTTTTAAAAATAGCAATTAGTTCATGGTTAAAATTGGTATTTAGTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATAGCAATTAGTTCATGGTTAAAATTGGTATTTAGTTAGTG  350

seq1  AGAAAGAGATTTCTTTGGGAGAAAGTTTATATCATTGTAACAGTAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGATTTCTTTGGGAGAAAGTTTATATCATTGTAACAGTAAATTG  400

seq1  AGTCTTCTTTTAAGACTATGGTCGGTCATTTAACTCTGTGTTGCCAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTTTTAAGACTATGGTCGGTCATTTAACTCTGTGTTGCCAAAGT  450

seq1  CAATGTTACCATTTTTATCATAAGCATCTACACCATGATTTGAAAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTACCATTTTTATCATAAGCATCTACACCATGATTTGAAAGTTTA  500

seq1  TTTCTTTTACTTTGATTTTTTTTTTATTTTTTAAAGTTAACACACAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTACTTTGATTTTTTTTTTATTTTTTAAAGTTAACACACAAAGA  550

seq1  TACACATTTGTTTATGGAGTTTTTATACCTAGGTGTTATTTTTCTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTGTTTATGGAGTTTTTATACCTAGGTGTTATTTTTCTTTTGT  600

seq1  CGTTATCTGTCTCTCTCTAGCTGTCTTCCCTCATCCCCTCACTCCTCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATCTGTCTCTCTCTAGCTGTCTTCCCTCATCCCCTCACTCCTCGCT  650

seq1  TTCTGTTTCTCTACAAATACTCTCTGCTTTCATGTAATATGGATTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTCTACAAATACTCTCTGCTTTCATGTAATATGGATTTCATT  700

seq1  TCTCTGTCCCACTTAAGATTTCTTCCTCTCCTGTTCACCCCCCCCCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCCACTTAAGATTTCTTCCTCTCCTGTTCACCCCCCCCCCTTT  750

seq1  TCTACACAGAGAGGGGGA-GGGGGAGTGA  778
      |||||||||||||||||| ||||||||||
seq2  TCTACACAGAGAGGGGGAGGGGGGAGTGA  779