BAC Information

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BAC

Clone NameB6Ng01-029F06
Chromosome6 (Build37)
Map Location 119,943,825 - 120,048,915
singlet/doubletdoublet
Overlap geneWnk1, Ninj2
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, EG406236
Downstream geneB4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029F06.bB6Ng01-029F06.g
ACCDH859558DH859559
length1,160663
definitionDH859558|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F06, 5' end.DH859559|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,047,734 - 120,048,915)(119,943,825 - 119,944,487)
sequence
gaattcatagcagctacaagtcaagacgatgattaccagtcagttactaa
aaaggcgaggaaccaggttacagagcaataaactgtcctgggtgttccac
acagtgtcagcagaaaccaaacttgaatcaactgataagtgtgtgtagaa
atatcttcttattgctgaccttgagacagtttacctcctgaagaatatgc
tggattttacttctgaatgccatcatttctctgatctctttgaagagtga
gtacagaagtttaataaagagtttaatataaaaaggggtggagtcaagag
gtgcgactcactgagggctagcataggctcgtttggccagcataggcaag
gcccaagacaaagacgctgtctcagagctcagatacacaaaactgaggga
ggttgttgcagtagacttgacttcaaacaatgttaaaagttatttagaaa
aagtaaagaaaagaaaagaagccaaaagctcacatctattgaaagaaagt
agagggctggagagctcagatctacagtacttgtgagatccttggtttga
tttcagcatgatgggaagaaaaaaataaatatatcaacaagtgtaacaac
tccaaagaaataaaagaaggtaaaaagaaaacttcatttttattatcttt
caaaaaacttggggtgtggggcaggcatgaaacagagtttctctgtgtag
gcctgactgtcctggaactctgtagaccaggctggcctcaaactcagaga
tccacctaacctctgactcccaagtactgggattaaaagtgtggggcgtc
actgcccgacctcattttttaaaaatcatttttaatagcagtagtctaaa
cgcatcagttaaaaaacaaagagagaggctaaggaagcagcttagtcagg
aaggcacttgtgtgtaaagatggagacttgggtttcattttccgaatcca
ctttaaagctgaaggagtggcataggacagtcagcactgagaggaacacc
ctacctttctgaccaacacctagccatgtggtgagcccagacaacgagaa
gactttatttcaaagcaaggcagatggctggagatgacccctacctcatt
gtcttgagtaggcatgccctggctcagtgaggagaacactcctcaaatac
atcaaactat
gaattcatagtgaaagaaaagaaatgaattctggatttagtctttctacc
tctatacttgtgccatggcacatgtctggactagcacatacacattattc
tcattcatattctatttattctcatagttgctctcctttccacccgtctc
tcctcctcccctatacccatgataaagtgcactttaaaaaggcaatgaga
ctagcttaacaagagggaaaccacaccctcacgccttgtataagaaatct
gcgggggtccatcccataatcagccaccaaatgcagacactattaaatat
gacagcaagattttgctgaaaggaccctgatatagctgtctcttgtgagg
ctatgccagtgcctggcaaacacagaagtgaatgctcacagtcagctatt
ggatggaacacagtgcccccaatggaagagatagagaaagtgccctagga
gctgaaggggctgcaaccctataggttgaacaacaatatgaactaaccag
tacccccagagctcgtgtctctagctgcatatgtagcagaagatggccta
ctcggccatcaatgggaagagaggccccttggtcttgcaaactttatatg
ccccagtacaggggaacgccagggccaagaagtgggagtgagtgggtagg
agagcgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120047734_120048915
seq2: B6Ng01-029F06.b_44_1203 (reverse)

seq1  ATAGTTTGATGTATATGGAGGGTTGTTCTCCTCACTGGGCCCAGTGGCAT  50
      |||||||||||||| | ||||  |||||||||||||| | |||| |||||
seq2  ATAGTTTGATGTAT-TTGAGGAGTGTTCTCCTCACTGAG-CCAG-GGCAT  47

seq1  AGGCCTACTCAGGACAATGAAGTAGGGGTCATTTCTCAGGCCATCTGCCT  100
        ||||||||| |||||||| ||||||||||  ||||  |||||||||||
seq2  --GCCTACTCAAGACAATGAGGTAGGGGTCA--TCTCCAGCCATCTGCCT  93

seq1  TGCTTTTTGAAATAAGGTC-TCTCGCTGGTCTGGGGCTCACCACATTGGC  149
      |||  |||||||||| ||| ||||| | |||| |||||||||||| ||||
seq2  TGC--TTTGAAATAAAGTCTTCTCG-TTGTCT-GGGCTCACCACA-TGGC  138

seq1  TAGGGTGTTTGGTCAGGAAGGTATGTGGTTGTTTCCTCTCCAGTGCTGGA  199
      || |||| |||||||| ||||||   || || ||||||| ||||||| ||
seq2  TA-GGTG-TTGGTCAGAAAGGTA---GGGTG-TTCCTCT-CAGTGCT-GA  180

seq1  CTGTCCCTATGCCACTGCCTTCAGCTTTTAAAGTGGATTCTGGAAATGAA  249
      |||| ||||||||||| |||||||| |||||||||||||| | |||||||
seq2  CTGT-CCTATGCCACT-CCTTCAGC-TTTAAAGTGGATTCGGAAAATGAA  227

seq1  ACCCAAGTCTCCATCTTTACACACAAGTGCCTTCCTGACTAAGCTGCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTCTCCATCTTTACACACAAGTGCCTTCCTGACTAAGCTGCTTC  277

seq1  CTTAGCCTCTCTCTTTGTTTTTTAACTGATGCGTTTAGACTACTGCTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTCTCTCTTTGTTTTTTAACTGATGCGTTTAGACTACTGCTATT  327

seq1  AAAAATGATTTTTAAAAAATGAGGTCGGGCAGTGACGCCCCACACTTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTTTTAAAAAATGAGGTCGGGCAGTGACGCCCCACACTTTTA  377

seq1  ATCCCAGTACTTGGGAGTCAGAGGTTAGGTGGATCTCTGAGTTTGAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTACTTGGGAGTCAGAGGTTAGGTGGATCTCTGAGTTTGAGGCC  427

seq1  AGCCTGGTCTACAGAGTTCCAGGACAGTCAGGCCTACACAGAGAAACTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTTCCAGGACAGTCAGGCCTACACAGAGAAACTCT  477

seq1  GTTTCATGCCTGCCCCACACCCCAAGTTTTTTGAAAGATAATAAAAATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGCCTGCCCCACACCCCAAGTTTTTTGAAAGATAATAAAAATGA  527

seq1  AGTTTTCTTTTTACCTTCTTTTATTTCTTTGGAGTTGTTACACTTGTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTTTTACCTTCTTTTATTTCTTTGGAGTTGTTACACTTGTTGA  577

seq1  TATATTTATTTTTTTCTTCCCATCATGCTGAAATCAAACCAAGGATCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTTTTTTCTTCCCATCATGCTGAAATCAAACCAAGGATCTCA  627

seq1  CAAGTACTGTAGATCTGAGCTCTCCAGCCCTCTACTTTCTTTCAATAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTGTAGATCTGAGCTCTCCAGCCCTCTACTTTCTTTCAATAGAT  677

seq1  GTGAGCTTTTGGCTTCTTTTCTTTTCTTTACTTTTTCTAAATAACTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTTTGGCTTCTTTTCTTTTCTTTACTTTTTCTAAATAACTTTTA  727

seq1  ACATTGTTTGAAGTCAAGTCTACTGCAACAACCTCCCTCAGTTTTGTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTTGAAGTCAAGTCTACTGCAACAACCTCCCTCAGTTTTGTGTA  777

seq1  TCTGAGCTCTGAGACAGCGTCTTTGTCTTGGGCCTTGCCTATGCTGGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTCTGAGACAGCGTCTTTGTCTTGGGCCTTGCCTATGCTGGCCA  827

seq1  AACGAGCCTATGCTAGCCCTCAGTGAGTCGCACCTCTTGACTCCACCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGCCTATGCTAGCCCTCAGTGAGTCGCACCTCTTGACTCCACCCCT  877

seq1  TTTTATATTAAACTCTTTATTAAACTTCTGTACTCACTCTTCAAAGAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTAAACTCTTTATTAAACTTCTGTACTCACTCTTCAAAGAGAT  927

seq1  CAGAGAAATGATGGCATTCAGAAGTAAAATCCAGCATATTCTTCAGGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATGATGGCATTCAGAAGTAAAATCCAGCATATTCTTCAGGAGG  977

seq1  TAAACTGTCTCAAGGTCAGCAATAAGAAGATATTTCTACACACACTTATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTCTCAAGGTCAGCAATAAGAAGATATTTCTACACACACTTATC  1027

seq1  AGTTGATTCAAGTTTGGTTTCTGCTGACACTGTGTGGAACACCCAGGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCAAGTTTGGTTTCTGCTGACACTGTGTGGAACACCCAGGACA  1077

seq1  GTTTATTGCTCTGTAACCTGGTTCCTCGCCTTTTTAGTAACTGACTGGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGCTCTGTAACCTGGTTCCTCGCCTTTTTAGTAACTGACTGGTA  1127

seq1  ATCATCGTCTTGACTTGTAGCTGCTATGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  ATCATCGTCTTGACTTGTAGCTGCTATGAATTC  1160

seq1: chr6_119943825_119944487
seq2: B6Ng01-029F06.g_67_729

seq1  GAATTCATAGTGAAAGAAAAGAAATGAATTCTGGATTTAGTCTTTCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGAAAGAAAAGAAATGAATTCTGGATTTAGTCTTTCTACC  50

seq1  TCTATACTTGTGCCATGGCACATGTCTGGACTAGCACATACACATTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACTTGTGCCATGGCACATGTCTGGACTAGCACATACACATTATTC  100

seq1  TCATTCATATTCTATTTATTCTCATAGTTGCTCTCCTTTCCACCCGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATATTCTATTTATTCTCATAGTTGCTCTCCTTTCCACCCGTCTC  150

seq1  TCCTCCTCCCCTATACCCATGATAAAGTGCACTTTAAAAAGGCAATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCCCTATACCCATGATAAAGTGCACTTTAAAAAGGCAATGAGA  200

seq1  CTAGCTTAACAAGAGGGAAACCACACCCTCACGCCTTGTATAAGAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTAACAAGAGGGAAACCACACCCTCACGCCTTGTATAAGAAATCT  250

seq1  GCGGGGGTCCATCCCATAATCAGCCACCAAATGCAGACACTATTAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGGTCCATCCCATAATCAGCCACCAAATGCAGACACTATTAAATAT  300

seq1  GACAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGG  350

seq1  CTATGCCAGTGCCTGGCAAACACAGAAGTGAATGCTCACAGTCAGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGTGCCTGGCAAACACAGAAGTGAATGCTCACAGTCAGCTATT  400

seq1  GGATGGAACACAGTGCCCCCAATGGAAGAGATAGAGAAAGTGCCCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAACACAGTGCCCCCAATGGAAGAGATAGAGAAAGTGCCCTAGGA  450

seq1  GCTGAAGGGGCTGCAACCCTATAGGTTGAACAACAATATGAACTAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGGGCTGCAACCCTATAGGTTGAACAACAATATGAACTAACCAG  500

seq1  TACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTA  550

seq1  CTCGGCCATCAATGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCATCAATGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATG  600

seq1  CCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGAGTGGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGAGTGGGTAGG  650

seq1  AGAGCGGGGGGGG  663
      |||||||||||||
seq2  AGAGCGGGGGGGG  663