BAC Information

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BAC

Clone NameB6Ng01-029O13
Chromosome6 (Build37)12 (Build37)
Map Location 18,835,442 - 18,835,96830,761,088 - 30,761,983
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029O13.bB6Ng01-029O13.g
ACCDH859969DH859970
length931883
definitionDH859969|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O13, 5' end.DH859970|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(30,761,088 - 30,761,983)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgtgttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgagttttatcataca
gatctttcacttccttagttagagtcacgcc
gaattcagttagggtccaggaaggcagaatgtagccatgggcagttagaa
cttttggaggatctagggatagacaacaaatttcccagtggtctgtccca
catagagacaaatcgaactagtcactgggagttagagagcaagaggcaga
gcccttgagccagcctagccagggacctgcaacatctgaccctggagtct
gagcagatgttgctttcatacctcctgtgctgctgccaagttcctaaccc
agtgacttcccacaatgaactgtctgaggccagcagcccttcctccaact
ctctgctatcacagccctgccatagactcttgtcggctgctaatcactgg
ctccttgagattgttagaaaccacccagcagagaaatgtttgttttctta
agtctcacatactgtgtccagcactgtaaaaggtgccacacccctgaggc
tatgaggactagtcccagcagcaggctgcaggggttggatcaatgctggc
taaggttgattctgagtgaaagaggaggcagccgaggcctggtagcttag
actggctttccagctgggacctgtatcccagctgttctctctctagaatc
tgaaaatctcttggaagctggaacaccagtgtttcttaaagttgagcctt
ggagtttaaatttgtcagtatctctttctttctttctttctttctttctt
cttcttcttcttcttcttcttcgttttttttttttttttttttttttttt
ttttttttttttttttagggtttccgggggaggggttttctgtaaacttt
ggctgtcccggaactccttttgaaaacaagcgggctctaatcaaaaatcc
tcctgctttgcctccgagtggtgggattaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-029O13.b_47_574 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr12_30761088_30761983
seq2: B6Ng01-029O13.g_68_950

seq1  GAATTCAGTTAGGGTCCAGGAAGGCAGAATGTAGCCATGGGCAGTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGGGTCCAGGAAGGCAGAATGTAGCCATGGGCAGTTAGAA  50

seq1  CTTTTGGAGGATCTAGGGATAGACAACAAATTTCCCAGTGGTCTGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAGGATCTAGGGATAGACAACAAATTTCCCAGTGGTCTGTCCCA  100

seq1  CATAGAGACAAATCGAACTAGTCACTGGGAGTTAGAGAGCAAGAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGACAAATCGAACTAGTCACTGGGAGTTAGAGAGCAAGAGGCAGA  150

seq1  GCCCTTGAGCCAGCCTAGCCAGGGACCTGCAACATCTGACCCTGGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGAGCCAGCCTAGCCAGGGACCTGCAACATCTGACCCTGGAGTCT  200

seq1  GAGCAGATGTTGCTTTCATACCTCCTGTGCTGCTGCCAAGTTCCTAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATGTTGCTTTCATACCTCCTGTGCTGCTGCCAAGTTCCTAACCC  250

seq1  AGTGACTTCCCACAATGAACTGTCTGAGGCCAGCAGCCCTTCCTCCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCCCACAATGAACTGTCTGAGGCCAGCAGCCCTTCCTCCAACT  300

seq1  CTCTGCTATCACAGCCCTGCCATAGACTCTTGTCGGCTGCTAATCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTATCACAGCCCTGCCATAGACTCTTGTCGGCTGCTAATCACTGG  350

seq1  CTCCTTGAGATTGTTAGAAACCACCCAGCAGAGAAATGTTTGTTTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAGATTGTTAGAAACCACCCAGCAGAGAAATGTTTGTTTTCTTA  400

seq1  AGTCTCACATACTGTGTCCAGCACTGTAAAAGGTGCCACACCCCTGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACATACTGTGTCCAGCACTGTAAAAGGTGCCACACCCCTGAGGC  450

seq1  TATGAGGACTAGTCCCAGCAGCAGGCTGCAGGGGTTGGATCAATGCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGACTAGTCCCAGCAGCAGGCTGCAGGGGTTGGATCAATGCTGGC  500

seq1  TAAGGTTGATTCTGAGTGAAAGAGGAGGCAGCCGAGGCCTGGTAGCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGATTCTGAGTGAAAGAGGAGGCAGCCGAGGCCTGGTAGCTTAG  550

seq1  ACTGGCTTTCCAGCTGGGACCTGTATCCCAGCTGTTCTCTCTCTAGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTTCCAGCTGGGACCTGTATCCCAGCTGTTCTCTCTCTAGAATC  600

seq1  TGAAAATCTCTTGGAAGCTGGAACACCAGTGTTTCTTAAAGTTGAGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTCTTGGAAGCTGGAACACCAGTGTTTCTTAAAGTTGAGCCTT  650

seq1  GGAGTTTAAATTTGTCAGTATCTCTTTCTTTCTTTCTTTCTTTCTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTAAATTTGTCAGTATCTCTTTCTTTCTTTCTTTCTTTCTTTCTT  700

seq1  CTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT  750
      ||||||||||||||||||||||        ||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTC-------GTTTTTTTTTTTTTTTTTTTT  743

seq1  TTTTTTTTTTTTTTTTTTTTTTTTGGTTTTCTGAGGCAGGGTTTCTCTGT  800
      ||||||||||||||||||||||| || |||| | || |||| || |||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTAGGGTTTCCGGGGGAGGGGTTTTCTGT  793

seq1  ATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  850
      | | || ||||||||| |||||||  |||| | || ||   || ||| ||
seq2  A-AACTTTGGCTGTCCCGGAACTCCTTTTGAAAACAAG--CGGGCTCTAA  840

seq1  CTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  896
       ||| ||||||||||| || ||||| ||||||| ||||||||||||
seq2  -TCAAAAATCCTCCTG-CTTTGCCT-CCGAGTGGTGGGATTAAAGG  883