BAC Information

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BAC

Clone NameB6Ng01-030A09
Chromosome16 (Build37)6 (Build37)
Map Location 60,775,968 - 60,776,51166,759,395 - 66,760,424
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A09.bB6Ng01-030A09.g
ACCDH860051DH860052
length8461,024
definitionDH860051|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A09, 5' end.DH860052|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,775,968 - 60,776,511)(66,759,395 - 66,760,424)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgatttgttaatt
aggattttgtccctgtgccctttagtgtgtctagctaagggtttatctat
cttgttgattttctcaaagaaccaactcctcgttggttaattctttgaat
agttcttcttgtttccacttggttgatttcacccctgagtttgatt
gaattctttgtttagaattttacttttgagccattctctagcataagcaa
gtaaagagaacagattcttgtagacatagaaatatatcagtgtaatgatt
tataaatcacatagatttcacctaatattgtttcaggatattatatacat
gatagtaaaaggggactattcttgaaagtatggaggtgtagcagaagggt
gaataaagacaggaagggctaatagggtcaagaaaagtaatgaatattat
atattaaatgaaaatgtcatgtatcatatcactttttttacagtggatgt
acagtataaataatatttaatatatgatataatataacgtataatatata
atgtataatatgtaacatataatatacaatatataacatataataatata
taatatatgagattaaaatagtaagtgaagacaggtgttgtgtcacacac
ctttgattccagcacctttaaagctaaggcaggagcattgttagtttgat
tagagactgagaacctaagtctcccatacagaatacaacaaaatcaaaat
ataaaacatataacatagctatgaaatcattgtcaataaatgcaacaaaa
taatgccaataattgtcattaagtcactggccaaaggttaccaacaccag
aaaaacaactgatataaataagagtttatgtttttaagtattaaagaata
ttgtttgttttgaataatttacattaaaagtctgcactagtacactaggc
aggggcaatagatctgaccgaatcaactggaaaacaaaaaccacactttc
tattttcattaatggtcattttatttaagaggcattttatataacttatt
tttcactcacgtgatgtacacttatcatgttagtggtgctggcatacatt
aagctattctctattcttagactcattagccaaataattttcacaaatgc
ccacacactcacagttcaccacacaccacccccacattttctttgagagt
tttttttttttcccaaatcttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60775968_60776511
seq2: B6Ng01-030A09.b_350_891 (reverse)

seq1  AATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTC  50

seq1  AAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATA  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTAACC-AACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATA  99

seq1  GATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAAT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATAAACCCTTAGCTAGACACACTAAAGGGCACAGGGACAAAATCCTAAT  149

seq1  TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAC-AAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  198

seq1  TCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTG  248

seq1  GAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAA  298

seq1  GTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAG  348

seq1  AAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCA  398

seq1  GATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCC  448

seq1  AATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCA  498

seq1  ACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG  542

seq1: chr6_66759395_66760424
seq2: B6Ng01-030A09.g_71_1094 (reverse)

seq1  GGCAAGATTTTGGGAAATATATAAAAACGTTCAATGAAAATGTGTGTGTG  50
      ||||||| ||||||||| | | ||||||  |||| ||||||||| | |||
seq2  GGCAAGA-TTTGGGAAA-AAAAAAAAACTCTCAAAGAAAATGTGGGGGTG  48

seq1  TGTGTGT-GTGTACGTGTGAGTGTGTGTGCATTTGTGTGAAATTATTTGG  99
       |||||| ||| || |||||||||||| |||||||||  |||||||||||
seq2  -GTGTGTGGTGAAC-TGTGAGTGTGTGGGCATTTGTG-AAAATTATTTGG  95

seq1  CTAATGAGTCTAAGAATAGAGGAATAGCTTAATGTATGCCAGCACCACTA  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTAATGAGTCTAAGAATAGA-GAATAGCTTAATGTATGCCAGCACCACTA  144

seq1  ACATGAATAAGTGTACATCACGTGAGTGAAAAATAAGTTATATAAAATGC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATG-ATAAGTGTACATCACGTGAGTGAAAAATAAGTTATATAAAATGC  193

seq1  CTCTTAAATAAAATGACCATTAATGAAAATAGAAAGTGTGGTTTTTGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAATAAAATGACCATTAATGAAAATAGAAAGTGTGGTTTTTGTTT  243

seq1  TCCAGTTGATTCGGTCAGATCTATTGCCCCTGCCTAGTGTACTAGTGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGATTCGGTCAGATCTATTGCCCCTGCCTAGTGTACTAGTGCAG  293

seq1  ACTTTTAATGTAAATTATTCAAAACAAACAATATTCTTTAATACTTAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATGTAAATTATTCAAAACAAACAATATTCTTTAATACTTAAAA  343

seq1  ACATAAACTCTTATTTATATCAGTTGTTTTTCTGGTGTTGGTAACCTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTCTTATTTATATCAGTTGTTTTTCTGGTGTTGGTAACCTTTG  393

seq1  GCCAGTGACTTAATGACAATTATTGGCATTATTTTGTTGCATTTATTGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGACTTAATGACAATTATTGGCATTATTTTGTTGCATTTATTGAC  443

seq1  AATGATTTCATAGCTATGTTATATGTTTTATATTTTGATTTTGTTGTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTCATAGCTATGTTATATGTTTTATATTTTGATTTTGTTGTATT  493

seq1  CTGTATGGGAGACTTAGGTTCTCAGTCTCTAATCAAACTAACAATGCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGGAGACTTAGGTTCTCAGTCTCTAATCAAACTAACAATGCTCC  543

seq1  TGCCTTAGCTTTAAAGGTGCTGGAATCAAAGGTGTGTGACACAACACCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGCTTTAAAGGTGCTGGAATCAAAGGTGTGTGACACAACACCTG  593

seq1  TCTTCACTTACTATTTTAATCTCATATATTATATATTATTATATGTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTTACTATTTTAATCTCATATATTATATATTATTATATGTTATA  643

seq1  TATTGTATATTATATGTTACATATTATACATTATATATTATACGTTATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATATTATATGTTACATATTATACATTATATATTATACGTTATAT  693

seq1  TATATCATATATTAAATATTATTTATACTGTACATCCACTGTAAAAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATATATTAAATATTATTTATACTGTACATCCACTGTAAAAAAAG  743

seq1  TGATATGATACATGACATTTTCATTTAATATATAATATTCATTACTTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGATACATGACATTTTCATTTAATATATAATATTCATTACTTTTC  793

seq1  TTGACCCTATTAGCCCTTCCTGTCTTTATTCACCCTTCTGCTACACCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTATTAGCCCTTCCTGTCTTTATTCACCCTTCTGCTACACCTCC  843

seq1  ATACTTTCAAGAATAGTCCCCTTTTACTATCATGTATATAATATCCTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAAGAATAGTCCCCTTTTACTATCATGTATATAATATCCTGAA  893

seq1  ACAATATTAGGTGAAATCTATGTGATTTATAAATCATTACACTGATATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTAGGTGAAATCTATGTGATTTATAAATCATTACACTGATATAT  943

seq1  TTCTATGTCTACAAGAATCTGTTCTCTTTACTTGCTTATGCTAGAGAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTCTACAAGAATCTGTTCTCTTTACTTGCTTATGCTAGAGAATG  993

seq1  GCTCAAAAGTAAAATTCTAAACAAAGAATTC  1030
      |||||||||||||||||||||||||||||||
seq2  GCTCAAAAGTAAAATTCTAAACAAAGAATTC  1024