BAC Information

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BAC

Clone NameB6Ng01-030H01
Chromosome6 (Build37)
Map Location 89,796,968 - 89,967,863
singlet/doubletdoublet
Overlap geneV1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8
Upstream genePodxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6
Downstream geneV1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030H01.bB6Ng01-030H01.g
ACCDH860349DH860350
length1,071737
definitionDH860349|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H01, 5' end.DH860350|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,796,968 - 89,798,048)(89,967,129 - 89,967,863)
sequence
gaattcttaagtatctaccagccagggcctattctcatactgaagttgga
cttctcacaaagatcaccaatcaaggaaattcatcacaaatatgccccca
tttctatctgctgggggaattatctgaactgatattaccttctcccactc
taaattgtttaccttggatcaaaacaaacaaagaaacaaacaaaccgaaa
tagctgacacaaaacaaacccttctcaggttgacataaaaaacatcaatg
ttagactgttaatgttgtctcttttctttgtttccaatatatcatactaa
tatcaacattttaatataaaaattcgatatactttaaaagttctgtatgc
ctcccttaattttcaaatcatgttcaacattcaaagcctctccaaaattt
tcaggctataaaataatcgagttctcttacattttcatgatgttctagtt
caaggcctgctcagagcagaaaaattgaagccccctatatcaaggaggcc
ctggttttagcctttgtgtcattacacagttaccaaaatcatggacacca
gtatccgctaggatcatcacaaagaagggtttggtattcactctatagaa
ggcagtatatcaacaccattacctttatggtacataattaagagaagcaa
aattatttccttaaaattgaaattaaaacaccagtacatttcaagatgca
tacaagaaaaaacgcttctaaaatcctctggaaattataccatacacgta
tgtatgattaaataaatttggtaattagctcaggaaattaaattgaaatt
aaaattaacagacatcttataaaaattaggtgtgtttaggaccataaaaa
ttgaataccccaggatgaaaatgcacttggtgcagcatacagtaccctgt
gctgagcatccttcagactcagcatccccatggcaaaacttaaactaccc
ctgcaactcccacagcctgcctgggaccagccacttctgattctgtgcta
ctcaggcacttactccaatggaagggtggggcagtgagtctgagcctagg
agtcctgcacaagcttaggtc
gaattctctaccctgtcccctcccagctgaacctcagcagctcacacctt
cctggcttagcatgggttaggaaaccaggagagaagacccacaatctgtg
atctgcagaattaagtgattctcatctaacagagttgcagaagagagtaa
gctgtgacaggcctgggatcatttgttgtaccatgtactctgattgaatt
ttgcacaatgtaacaaaacaggctgctttcaagagacaggaaattctgta
catagtgtacataaaggtcactgatttctgaaacatgtccccttagaaga
gactgcgaagtgagtaatgaaaggaaaggaagacatttgggcagattaca
aaagcaatcacttatggaagaagaaatgacaaagaggaacctgagcagtc
ctcacttaaagtcaattgcaaaggccatggctgctcaaggcagaaaagta
gaaacttcctgtaccgcctgaataaaggaagccctgacgttagtctttgt
gtcattccacggttacccatggaaaaccatgacccataggatcatcaact
caagtggtttggtaggtgacattggtccattgggctaagggagggcaact
gtttctgaaagaatgtgttaagaattgcatttttaaatcttaaagccttt
gtagctgtgtcttttttgctcagactgtcagtgagaatgctaccaggtgt
tttcttaataaacctccaaaaccagcaggaatggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_89796968_89798048
seq2: B6Ng01-030H01.b_44_1114

seq1  GAATTCTTAAGTATCTACCAGCCAGGGCCTATTCTCATACTGAAGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTATCTACCAGCCAGGGCCTATTCTCATACTGAAGTTGGA  50

seq1  CTTCTCACAAAGATCACCAATCAAGGAAATTCATCACAAATATGCCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACAAAGATCACCAATCAAGGAAATTCATCACAAATATGCCCCCA  100

seq1  TTTCTATCTGCTGGGGGAATTATCTGAACTGATATTACCTTCTCCCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTGCTGGGGGAATTATCTGAACTGATATTACCTTCTCCCACTC  150

seq1  TAAATTGTTTACCTTGGATCAAAACAAACAAAGAAACAAACAAACCGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTTTACCTTGGATCAAAACAAACAAAGAAACAAACAAACCGAAA  200

seq1  TAGCTGACACAAAACAAACCCTTCTCAGGTTGACATAAAAAACATCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACACAAAACAAACCCTTCTCAGGTTGACATAAAAAACATCAATG  250

seq1  TTAGACTGTTAATGTTGTCTCTTTTCTTTGTTTCCAATATATCATACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGTTAATGTTGTCTCTTTTCTTTGTTTCCAATATATCATACTAA  300

seq1  TATCAACATTTTAATATAAAAATTCGATATACTTTAAAAGTTCTGTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACATTTTAATATAAAAATTCGATATACTTTAAAAGTTCTGTATGC  350

seq1  CTCCCTTAATTTTCAAATCATGTTCAACATTCAAAGCCTCTCCAAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTAATTTTCAAATCATGTTCAACATTCAAAGCCTCTCCAAAATTT  400

seq1  TCAGGCTATAAAATAATCGAGTTCTCTTACATTTTCATGATGTTCTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTATAAAATAATCGAGTTCTCTTACATTTTCATGATGTTCTAGTT  450

seq1  CAAGGCCTGCTCAGAGCAGAAAAATTGAAGCCCCCTATATCAAGGAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTGCTCAGAGCAGAAAAATTGAAGCCCCCTATATCAAGGAGGCC  500

seq1  CTGGTTTTAGCCTTTGTGTCATTACACAGTTACCAAAATCATGGACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTAGCCTTTGTGTCATTACACAGTTACCAAAATCATGGACACCA  550

seq1  GTATCCGCTAGGATCATCACAAAGAAGGGTTTGGTATTCACTCTATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCGCTAGGATCATCACAAAGAAGGGTTTGGTATTCACTCTATAGAA  600

seq1  GGCAGTATATCAACACCATTACCTTTATGGTACATAATTAAGAGAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATATCAACACCATTACCTTTATGGTACATAATTAAGAGAAGCAA  650

seq1  AATTATTTCCTTAAAATTGAAATTAAAACACCAGTACATTTCAAGATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCCTTAAAATTGAAATTAAAACACCAGTACATTTCAAGATGCA  700

seq1  TACAAGAAAAAACGCTTCTAAAATCCTCTGGAAATTATACCATACACGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAAAAACGCTTCTAAAATCCTCTGGAAATTATACCATACACGTA  750

seq1  TGTATGATTAAATAAATTTGGTAATTAGCTCAGGAAATTAAATTGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATTAAATAAATTTGGTAATTAGCTCAGGAAATTAAATTGAAATT  800

seq1  AAAATTAACAGACATCTTATAAAAATTAGGTGTGTTTAGGACCATAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACAGACATCTTATAAAAATTAGGTGTGTTTAGGACCATAAAAA  850

seq1  TTGAATACCCCAGGATGAAAATGCACTTGGTGCAGCATACAGTACCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACCCCAGGATGAAAATGCACTTGGTGCAGCATACAGTACCCTGT  900

seq1  GCTGAGCATCCTTCAGACTCAGCATCCCCATGGCAAAAACTTAAACTACC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTGAGCATCCTTCAGACTCAGCATCCCCATGGC-AAAACTTAAACTACC  949

seq1  CCTGCAACTCCCACAGCCTGCCTGGGACCCAGCCACCTTCTGATTCTGTG  1000
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CCTGCAACTCCCACAGCCTGCCTGGGA-CCAGCCA-CTTCTGATTCTGTG  997

seq1  CTTACTCAGGGCACTTACTCAGATGGAAGGGGTGGGGCAGGTGGAGTCTG  1050
      | |||||| |||||||||||  |||||| |||||||||||   |||||||
seq2  C-TACTCA-GGCACTTACTCCAATGGAA-GGGTGGGGCAG--TGAGTCTG  1042

seq1  AGCTGAGGAGATCCTGCACAGGCTTAGGTAC  1081
      |||  ||||| ||||||||| |||||||| |
seq2  AGCCTAGGAG-TCCTGCACAAGCTTAGGT-C  1071

seq1: chr6_89967129_89967863
seq2: B6Ng01-030H01.g_68_804 (reverse)

seq1  TATCCATTCCTGCTGGTTTTGGAGGTTTATTTAG-AAACACCTGGTAGCA  49
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  TATCCATTCCTGCTGGTTTTGGAGGTTTATTAAGAAAACACCTGGTAGCA  50

seq1  TTCTCACTGCCAGTCTGAGC-AAAAAGACACAGCTACAAAGGCTTTAAGA  98
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCACTGACAGTCTGAGCAAAAAAGACACAGCTACAAAGGCTTTAAGA  100

seq1  TTTAAAAATGCAATTCTTAACACATTCTTTCAGAAACAGTTGCCCTCCCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGCAATTCTTAACACATTCTTTCAGAAACAGTTGCCCTCCCT  150

seq1  TAGCCCAATGGACCAATGTCACCTACCAAACCACTTGAGTTGATGATCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAATGGACCAATGTCACCTACCAAACCACTTGAGTTGATGATCCT  200

seq1  ATGGGTCATGGTTTTCCATGGGTAACCGTGGAATGACACAAAGACTAACG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCATGGTTTTCCATGGGTAACCGTGGAATGACACAAAGACTAACG  250

seq1  TCAGGGCTTCCTTTATTCAGGCGGTACAGGAAGTTTCTACTTTTCTGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTTCCTTTATTCAGGCGGTACAGGAAGTTTCTACTTTTCTGCCT  300

seq1  TGAGCAGCCATGGCCTTTGCAATTGACTTTAAGTGAGGACTGCTCAGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCATGGCCTTTGCAATTGACTTTAAGTGAGGACTGCTCAGGTT  350

seq1  CCTCTTTGTCATTTCTTCTTCCATAAGTGATTGCTTTTGTAATCTGCCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGTCATTTCTTCTTCCATAAGTGATTGCTTTTGTAATCTGCCCA  400

seq1  AATGTCTTCCTTTCCTTTCATTACTCACTTCGCAGTCTCTTCTAAGGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTCCTTTCCTTTCATTACTCACTTCGCAGTCTCTTCTAAGGGGA  450

seq1  CATGTTTCAGAAATCAGTGACCTTTATGTACACTATGTACAGAATTTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCAGAAATCAGTGACCTTTATGTACACTATGTACAGAATTTCCT  500

seq1  GTCTCTTGAAAGCAGCCTGTTTTGTTACATTGTGCAAAATTCAATCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGAAAGCAGCCTGTTTTGTTACATTGTGCAAAATTCAATCAGAG  550

seq1  TACATGGTACAACAAATGATCCCAGGCCTGTCACAGCTTACTCTCTTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTACAACAAATGATCCCAGGCCTGTCACAGCTTACTCTCTTCTG  600

seq1  CAACTCTGTTAGATGAGAATCACTTAATTCTGCAGATCACAGATTGTGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGTTAGATGAGAATCACTTAATTCTGCAGATCACAGATTGTGGG  650

seq1  TCTTCTCTCCTGGTTTCCTAACCCATGCTAAGCCAGGAAGGTGTGAGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCCTGGTTTCCTAACCCATGCTAAGCCAGGAAGGTGTGAGCTG  700

seq1  CTGAGGTTCAGCTGGGAGGGGACAGGGTAGAGAATTC  735
      |||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCAGCTGGGAGGGGACAGGGTAGAGAATTC  737