BAC Information

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BAC

Clone NameB6Ng01-030H03
Chromosome6 (Build37)6 (Build37)
Map Location 18,835,422 - 18,835,96873,349,269 - 73,350,292
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030H03.bB6Ng01-030H03.g
ACCDH860353DH860354
length9551,006
definitionDH860353|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H03, 5' end.DH860354|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,422 - 18,835,968)(73,349,269 - 73,350,292)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtatgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatctttcacttccttcgttagagtcacgcgagatatttatatatttgt
ggcta
gaattccatactgtgttaggtacttatttcattgatgcaacaaaaaataa
gcaatataagaaggaaggaaggctcatttggactcagatttcaggtgtgc
ggtccactgtggtggaaaggcatggggcagcagtagagagcagctggtag
catggtgcccacagtcaggagcagagaacaatgaattctggcactcagtg
cactttctcctttatatttagtctgagatcccagaccatgagatggtgct
gcccacatttaggatgggtcatctgatctcagttaacacaatctaaatac
tcctgcatagatatgcttagaagcttgtcttcactgtgaccctagattct
gtaaagtagataatatgaatcatcacacacactttaactggtttgacatt
ccagagtagggcctgcattttggttggtctactgtgaccgatgtgattga
tggataccatgctaagtattatttcataactgctttcatcctagcatgtc
tgacatcaaataaacaattggaaataaaatcagtcaagcttctaattact
tggaagatgcaagtccaggcattgatttattttaattgctaaattggctt
actcaacagacatgtgaatttcataattatatcctaaatgttggcaccat
gtgttcaggtaacagaaaacataattgagtgtgcagaaccaacccatata
atgaataccatatgactttggtgctctctgcttcttgcctagatctagtc
taggctttggctgatgatgacctacgctttccatcctgattaatctacat
attccgattctcaaatttttcatgtgtggctaagatttcctgtgacacat
ttgctttccagctgcagtgatggtttttggtggtctttgacttatcagat
gaccctcctaggttcactgagctagcattcatcatacctttgggcagagt
agtgtagcaaataactgaagagtatccttgtaagagcccagcaggtgaaa
catgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835422_18835968
seq2: B6Ng01-030H03.b_50_597 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCATACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGT  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAA  300
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATG  349
      |||||||||| |||||||| || | |||||| ||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  399
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  449
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAA  500

seq1  TCAAATAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  547
      |||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  548

seq1: chr6_73349269_73350292
seq2: B6Ng01-030H03.g_66_1071

seq1  GAATTCCATACTGTGTTAGGTACTTATTTCATTGATGCAACAAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTGTGTTAGGTACTTATTTCATTGATGCAACAAAAAATAA  50

seq1  GCAATATAAGAAGGAAGGAAGGCTCATTTGGACTCAGATTTCAGGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATAAGAAGGAAGGAAGGCTCATTTGGACTCAGATTTCAGGTGTGC  100

seq1  GGTCCACTGTGGTGGAAAGGCATGGGGCAGCAGTAGAGAGCAGCTGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACTGTGGTGGAAAGGCATGGGGCAGCAGTAGAGAGCAGCTGGTAG  150

seq1  CATGGTGCCCACAGTCAGGAGCAGAGAACAATGAATTCTGGCACTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGCCCACAGTCAGGAGCAGAGAACAATGAATTCTGGCACTCAGTG  200

seq1  CACTTTCTCCTTTATATTTAGTCTGAGATCCCAGACCATGAGATGGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTCCTTTATATTTAGTCTGAGATCCCAGACCATGAGATGGTGCT  250

seq1  GCCCACATTTAGGATGGGTCATCTGATCTCAGTTAACACAATCTAAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACATTTAGGATGGGTCATCTGATCTCAGTTAACACAATCTAAATAC  300

seq1  TCCTGCATAGATATGCTTAGAAGCTTGTCTTCACTGTGACCCTAGATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATAGATATGCTTAGAAGCTTGTCTTCACTGTGACCCTAGATTCT  350

seq1  GTAAAGTAGATAATATGAATCATCACACACACTTTAACTGGTTTGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAGATAATATGAATCATCACACACACTTTAACTGGTTTGACATT  400

seq1  CCAGAGTAGGGCCTGCATTTTGGTTGGTCTACTGTGACCGATGTGATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTAGGGCCTGCATTTTGGTTGGTCTACTGTGACCGATGTGATTGA  450

seq1  TGGATACCATGCTAAGTATTATTTCATAACTGCTTTCATCCTAGCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCATGCTAAGTATTATTTCATAACTGCTTTCATCCTAGCATGTC  500

seq1  TGACATCAAATAAACAATTGGAAATAAAATCAGTCAAGCTTCTAATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAAATAAACAATTGGAAATAAAATCAGTCAAGCTTCTAATTACT  550

seq1  TGGAAGATGCAAGTCCAGGCATTGATTTATTTTAATTGCTAAATTGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATGCAAGTCCAGGCATTGATTTATTTTAATTGCTAAATTGGCTT  600

seq1  ACTCAACAGACATGTGAATTTCATAATTATATCCTAAATGTTGGCACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAGACATGTGAATTTCATAATTATATCCTAAATGTTGGCACCAT  650

seq1  GTGTTCAGGTAACAGAAAACATAATTGAGTGTGCAGAACCAACCCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGGTAACAGAAAACATAATTGAGTGTGCAGAACCAACCCATATA  700

seq1  ATGAATACCATATGACTTTGGTGCTCTCTGCTTCTTGCCTAGATCTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACCATATGACTTTGGTGCTCTCTGCTTCTTGCCTAGATCTAGTC  750

seq1  TAGGCTTTGGCTGATGATGACCTAGGCTTTCCATCCTGATTAATCTACAT  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGGCTTTGGCTGATGATGACCTACGCTTTCCATCCTGATTAATCTACAT  800

seq1  ATTCCGATTCTCAGATTTATTCATGTGTGGCTAAGATTTCCTGTGACACA  850
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  ATTCCGATTCTCAAATTT-TTCATGTGTGGCTAAGATTTCCTGTGACACA  849

seq1  TTTGCTTTTCCAGCTGCAGTTGATGGTTTTTGGTGGTCTTTGACCTTATC  900
      ||||| ||||||||||||| ||||||||||||||||||||||| ||||| 
seq2  TTTGC-TTTCCAGCTGCAG-TGATGGTTTTTGGTGGTCTTTGA-CTTAT-  895

seq1  CAGATGACCCTCCTAGGTTCACTGGAGGCTTAGCATTCCATCATTACCTG  950
      ||||||||||||||||||||||| |||   ||||||| ||||| ||||| 
seq2  CAGATGACCCTCCTAGGTTCACT-GAG--CTAGCATT-CATCA-TACCT-  939

seq1  TGGGGCAGAGGTAGGTGTAGCAAATAACTGAAGGAAGTATCCCTGGTATA  1000
      | ||||||| ||| |||||||||||||||||||  ||||| ||| ||| |
seq2  TTGGGCAGA-GTA-GTGTAGCAAATAACTGAAG--AGTAT-CCTTGTA-A  983

seq1  GAGCCCAGCCAGGTGAAACATGTT  1024
      |||||||| |||||||||||||||
seq2  GAGCCCAG-CAGGTGAAACATGTT  1006