BAC Information

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BAC

Clone NameB6Ng01-030N18
Chromosome6 (Build37)
Map Location 97,580,347 - 97,636,711
singlet/doubletdoublet
Overlap genenone
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
Downstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019, LOC665963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030N18.bB6Ng01-030N18.g
ACCDH860637DH860638
length1,090781
definitionDH860637|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N18, 5' end.DH860638|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,635,609 - 97,636,711)(97,580,347 - 97,581,126)
sequence
gaattcaaaactaaaacatagtaaatccattcagctcaccaggttaatgt
ctttcgggaactaatattcctcctcagtgaggacacgagttccccaggac
caggacttttgacacgcggctgaggactaagtatattgctgcaaatattc
gagaaggtctagaattttctttgctggaattgtgtatcacattgcctttc
cttgctggcttccatctctagtacaatgctttggatagtcacgtgtccta
tcctgtggatttttgtgtgtttcggctgctttctgttctcggccactata
gataaagttgttgagaacagttttaggggctagagtgagctcaaagggtg
agagcactagttgaccttccagaggactaggtttgatgcccagcatgcac
acgttggctcacaagcttctacttcagcttcagccgatccattaccttca
tctaatgcacacacacatacacacacacacatacatacatacatacatac
acacacacacacacacacatacatacatacacacacacacatacacacac
acacacacacacacacatacacacacacacacaccacggtgtgtatatat
atatatacacacatacatgcaggcactcatccatgcacaaaaactaccta
aatcctttttaaaaagaatattttagacagatgtttgttcagtataggtg
tgtgttgtttgtactgaggaaacctaatgaaattgctaatctgtgtgtta
gcatccattgtggtgtacagtcagctcccgtgctgtttcccagtgtctgg
tcattccaacatcagaacgaggaaagctgtagaagtgatgtttcatgact
tcactgacactttgtaatggtggtctttttcattttacccagtctagatg
ttctagacgtattctatgggtgggtgatgatatgttaataagaaatggac
aaatctttaatccccctccccgaactgcaatctctgagattattggatca
ctagtcatttggactttatttttctacttcatagaccttactattttttt
tttgacaggatcgaactgtgtagtataaggggccagaaat
gaattccgaagattaccctttccatctttcttccccagtacaaataactc
caagcgataaactattaggacacagatggtaaagcccatttattctgttc
ttttttactttaatgtcttgaagtttccatagactaaacccagatattcc
tgacctcgagtcagtcaggacatgctgatctccacatgttaggagaaatc
taattagctcagcagttagattactttcctagttcccagtaattttttaa
tctttcaggataattcctggcacacatttttaaatgttcttcttacctac
ataagcctcctggttaagcattttcacaagaatggtgatgctgtaaaacc
acacaatgtggtcttgaaatagacttcaatggttcacttaggaaccaatt
tctagagggttccattgataatttcaggattcagttaacatgctcgaccc
tttgtaattatactcacaggacagagataagagtcttcagtctctgacat
ttgtcctttagactccaagccacagttcttcgacatgccctctggttcat
catcagctcttatgcaggaacagttgtttccctgtgaaacatctgacagt
gtctggagatattttggattacacaactgtccaagtaggcatgccctgct
gaaatcttggcagtgggagacagagagctttctaaccattctccaatgtt
tgcattagatctcctataactcagccaaaaatgcccaaatttgacactat
tgaggaatactgactcatgttgtgtgtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_97635609_97636711
seq2: B6Ng01-030N18.b_46_1135 (reverse)

seq1  ATTTCCAGGCCACCTTAAACTACACAGTCAGATCCTGTCCAAAAAAAAAA  50
      |||| | |||| ||||| ||||||||||  |||||||||   ||||||||
seq2  ATTT-CTGGCC-CCTTATACTACACAGTTCGATCCTGTC---AAAAAAAA  45

seq1  AATAGTAAGGTCTATAGAAGTAGAAAATATAAGTCCCAAAATGACTAGTG  100
      ||||||||||||||| |||||||||||   ||||||  ||||||||||||
seq2  AATAGTAAGGTCTAT-GAAGTAGAAAAATAAAGTCC--AAATGACTAGTG  92

seq1  ATCCAATAATCTTCTGAGAATTGCCAGTTTCGGGGGAGGGGGAATTAAAG  150
      ||||||||||| || ||| |||| |||||   |||||||||| |||||||
seq2  ATCCAATAATC-TCAGAG-ATTG-CAGTT--CGGGGAGGGGG-ATTAAAG  136

seq1  ATTTGTCCCATTTCCTA-TAACATATCATCACCCACCCATAGAATACGTC  199
      |||||| ||||||| || ||||||||||||||||||||||||||||||||
seq2  ATTTGT-CCATTTCTTATTAACATATCATCACCCACCCATAGAATACGTC  185

seq1  TAGAACATCTAGACTGGCTAAAATGAAAAAGACCACCATTACAAAGTGTC  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGAACATCTAGACTGGGTAAAATGAAAAAGACCACCATTACAAAGTGTC  235

seq1  AGTGAAGTCATGAAACATCACTTCTACAGCTTTCCTCGTTCTGATGTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTCATGAAACATCACTTCTACAGCTTTCCTCGTTCTGATGTTGG  285

seq1  AATGACCAGACACTGGGAAACAGCACGGGAGCTGACTGTACACCACAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAGACACTGGGAAACAGCACGGGAGCTGACTGTACACCACAATG  335

seq1  GATGCTAACACACAGATTAGCAATTTCATTAGGTTTCCTCAGTACAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAACACACAGATTAGCAATTTCATTAGGTTTCCTCAGTACAAACA  385

seq1  ACACACACCTATACTGAACAAACATCTGTCTAAAATATTC-TTTTAAAAA  448
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACACACCTATACTGAACAAACATCTGTCTAAAATATTCTTTTTAAAAA  435

seq1  GGATTTAGGTAGTTTTTGTGCATGGATGAGTGCCTGCATGTATGTGTGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGGTAGTTTTTGTGCATGGATGAGTGCCTGCATGTATGTGTGTA  485

seq1  TATATATATATACACACCGTGGTGTGTGTGTGTGTGTATGTGTGTGTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATACACACCGTGGTGTGTGTGTGTGTGTATGTGTGTGTGTG  535

seq1  TGTGTGTGTGTGTATGTGTGTGTGTGTATGTATGTATGTGTGTGTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTATGTGTGTGTGTGTATGTATGTATGTGTGTGTGTGTG  585

seq1  TGTGTGTATGTATGTATGTATGTATGTGTGTGTGTGTATGTGTGTGTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTATGTATGTATGTATGTGTGTGTGTGTATGTGTGTGTGCA  635

seq1  TTAGATGAAGGTAATGGATCGGCTGAAGCTGAAGTAGAAGCTTGTGAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGAAGGTAATGGATCGGCTGAAGCTGAAGTAGAAGCTTGTGAGCC  685

seq1  AACGTGTGCATGCTGGGCATCAAACCTAGTCCTCTGGAAGGTCAACTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTGCATGCTGGGCATCAAACCTAGTCCTCTGGAAGGTCAACTAGT  735

seq1  GCTCTCACCCTTTGAGCTCACTCTAGCCCCTAAAACTGTTCTCAACAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCACCCTTTGAGCTCACTCTAGCCCCTAAAACTGTTCTCAACAACT  785

seq1  TTATCTATAGTGGCCGAGAACAGAAAGCAGCCGAAACACACAAAAATCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATAGTGGCCGAGAACAGAAAGCAGCCGAAACACACAAAAATCCA  835

seq1  CAGGATAGGACACGTGACTATCCAAAGCATTGTACTAGAGATGGAAGCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGGACACGTGACTATCCAAAGCATTGTACTAGAGATGGAAGCCA  885

seq1  GCAAGGAAAGGCAATGTGATACACAATTCCAGCAAAGAAAATTCTAGACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAGGCAATGTGATACACAATTCCAGCAAAGAAAATTCTAGACC  935

seq1  TTCTCGAATATTTGCAGCAATATACTTAGTCCTCAGCCGCGTGTCAAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGAATATTTGCAGCAATATACTTAGTCCTCAGCCGCGTGTCAAAAG  985

seq1  TCCTGGTCCTGGGGAACTCGTGTCCTCACTGAGGAGGAATATTAGTTCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCCTGGGGAACTCGTGTCCTCACTGAGGAGGAATATTAGTTCCC  1035

seq1  GAAAGACATTAACCTGGTGAGCTGAATGGATTTACTATGTTTTAGTTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACATTAACCTGGTGAGCTGAATGGATTTACTATGTTTTAGTTTTG  1085

seq1  AATTC  1103
      |||||
seq2  AATTC  1090

seq1: chr6_97580347_97581126
seq2: B6Ng01-030N18.g_69_849

seq1  GAATTCCGAAGATTACCCTTTCCATCTTTCTTCCCCAGTACAAATAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGAAGATTACCCTTTCCATCTTTCTTCCCCAGTACAAATAACTC  50

seq1  CAAGCGATAAACTATTAGGACACAGATGGTAAAGCCCATTTATTCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGATAAACTATTAGGACACAGATGGTAAAGCCCATTTATTCTGTTC  100

seq1  TTTTTTACTTTAATGTCTTGAAGTTTCCATAGACTAAACCCAGATATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTTTAATGTCTTGAAGTTTCCATAGACTAAACCCAGATATTCC  150

seq1  TGACCTCGAGTCAGTCAGGACATGCTGATCTCCACATGTTAGGAGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCGAGTCAGTCAGGACATGCTGATCTCCACATGTTAGGAGAAATC  200

seq1  TAATTAGCTCAGCAGTTAGATTACTTTCCTAGTTCCCAGTAATTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCTCAGCAGTTAGATTACTTTCCTAGTTCCCAGTAATTTTTTAA  250

seq1  TCTTTCAGGATAATTCCTGGCACACATTTTTAAATGTTCTTCTTACCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGATAATTCCTGGCACACATTTTTAAATGTTCTTCTTACCTAC  300

seq1  ATAAGCCTCCTGGTTAAGCATTTTCACAAGAATGGTGATGCTGTAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTCCTGGTTAAGCATTTTCACAAGAATGGTGATGCTGTAAAACC  350

seq1  ACACAATGTGGTCTTGAAATAGACTTCAATGGTTCACTTAGGAACCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTGGTCTTGAAATAGACTTCAATGGTTCACTTAGGAACCAATT  400

seq1  TCTAGAGGGTTCCATTGATAATTTCAGGATTCAGTTAACATGCTCGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGGTTCCATTGATAATTTCAGGATTCAGTTAACATGCTCGACCC  450

seq1  TTTGTAATTATACTCACAGGACAGAGATAAGAGTCTTCAGTCTCTGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTATACTCACAGGACAGAGATAAGAGTCTTCAGTCTCTGACAT  500

seq1  TTGTCCTTTAGACTCCAAGCCACAGTTCTTCGACATGCCCTCTGGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTAGACTCCAAGCCACAGTTCTTCGACATGCCCTCTGGTTCAT  550

seq1  CATCAGCTCTTATGCAGGAACAGTTGTTTCCCTGTGAAACATCTGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTCTTATGCAGGAACAGTTGTTTCCCTGTGAAACATCTGACAGT  600

seq1  GTCTGGAGATATTTTGGATTACACAACTGTCCAAGTAGGCATGCCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGATATTTTGGATTACACAACTGTCCAAGTAGGCATGCCCTGCT  650

seq1  GAAATCTTGGCAGTGGGAGACAGAGAGCTTTCTAACCATTCTCCAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTGGCAGTGGGAGACAGAGAGCTTTCTAACCATTCTCCAATGTT  700

seq1  TGCATTAGATCTCCTATAACTCAGCCAAAAATGCCCAAA-TTGACACTAT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCATTAGATCTCCTATAACTCAGCCAAAAATGCCCAAATTTGACACTAT  750

seq1  TGAGGAATACTGACTCATGTTGTGTGTGTGC  780
      |||||||||||||||||||||||||||||||
seq2  TGAGGAATACTGACTCATGTTGTGTGTGTGC  781