BAC Information

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BAC

Clone NameB6Ng01-031O09
Chromosome6 (Build37)
Map Location 109,882,446 - 110,024,122
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031O09.bB6Ng01-031O09.g
ACCDH861385DH861386
length1,116581
definitionDH861385|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O09, 5' end.DH861386|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,022,981 - 110,024,122)(109,882,446 - 109,883,026)
sequence
gaattccacattctaactttacagtgacatcagttttattgtccattact
tgtttctcctaccactacccacaaacagaatgattgtctctcctagtaga
tcttaaaactatgtatctcattacatgttattatcatgtgtatggatatt
ttacctatacattcagaatgatagcacctgagtgcagtacccgcaagtgc
taggagagatggattccctggattagagttatcattcagaacctcctgga
agtataaaatactggaacctcacaaacaacaagtatactatctagcatga
atgatgaaacaattcccatcgtttgtgtcacaggttatgtttgggatgag
tgtatgtaatctaatatacttacaacataatatatatcatgtgaccacgt
ggccttttcagtttcctatgtgtttgtataatcgtaaaatttgaacaatg
gcacaacattgttcagtaaaatattcagtaaaagtagagacactcacttc
ttgcatttgagagggtgattaaatattcaattcccctcaggttctaaaag
atcaagacacacagtgatgacttaatagtgtctttttgcaaggaaagttt
ggctaagtctaagacatcaggagaagaaaagcatagacatgattaaaatt
catgaatagcctaaaatattgtttttatttaaataatgaatcatagtcac
tatacctatatgaagctgaatttatggaaatagaaatgtttgaaacagga
aatctgatattaaccctattaagtttgtgttgcaagttagcatttaaaat
tacaatagactcctctataaattgtagttatggctgagttgtagacacaa
gccattatttcagccagttgtctttaattcacagatacagaactagataa
gtgtaatgcattacgttctcagtaccctttagataattacttgaaagtaa
tttctttgtgtataatatttaacgatacattttgctttggtttataactg
tgtattatttcagcataatactcctcatgtcatggatttccaaatataag
taaatcactccaatgcatcttgtccttcttattccaacacttttgatttt
tacatagaaatcattt
gaattcaactcatatactctgcaagagaagttagtgctcttaacaattag
gccatctcttcatccttgactagactcctgtttttttgttttgttttgtt
ttgttttgttttttaattaatcattgtatttgtttacatttcaaaggata
ttccccttccaggttacccctccacaaacctctatcccaccccccctctc
caccccaccctttgcctctatgagagtacttctctacttacccactcctg
cttcaccctctatcatccccctactctggggaatcaagcctctttaccac
ccattgatgtcacagaaggccatcctctgctacatatgtatctgaagtca
taagtccctccatgtacactcattgttgggagctctggctagtccagtta
gttgatattgttcttcctatgtagttacaatccacttcagttccttcagt
acttcccctagttcttccaatggggtccctgggctcagttagatgattgg
ctgtgagtatctgcatctgtattggttaggtgctggtagaatctctcagg
gaacagccatatcaggccattgtcagcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110022981_110024122
seq2: B6Ng01-031O09.b_47_1162 (reverse)

seq1  AAATGATTTTTCCATAATGTAAAAAATACAAAAAAGTGTATGAAATAAAG  50
      ||||||||| |     |||||||||      |||||||| || ||| |||
seq2  AAATGATTTCT-----ATGTAAAAA----TCAAAAGTGT-TGGAAT-AAG  39

seq1  AAGGAACCAAAGATGCCATGGGAGTGAATTTTAACTTATA-TTGGAAATA  99
      |||||    |||||| ||| |||||||   || ||||||| |||||||| 
seq2  AAGGA---CAAGATG-CATTGGAGTGA---TTTACTTATATTTGGAAAT-  81

seq1  CCATGAACATGAGGAGTTATTATGCTGAAAT-ATACACAG-TATAAACCC  147
      ||||| |||||||||| |||||||||||||| |||||||| |||||| ||
seq2  CCATG-ACATGAGGAG-TATTATGCTGAAATAATACACAGTTATAAA-CC  128

seq1  AAAGCAAAAATGTATCGGTTAAAATATATACACAAAGAAAATTTAACTTT  197
      ||||| |||||||||| ||||||   ||||||||||||||  |||   ||
seq2  AAAGC-AAAATGTATC-GTTAAATATTATACACAAAGAAA--TTA--CTT  172

seq1  TCAAGTAATTATCTAAAGGGTACTGAGAACGTAATGCATTACACTTATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAATTATCTAAAGGGTACTGAGAACGTAATGCATTACACTTATCT  222

seq1  AGTTCTGTTATCTGTGAATTAAAGACAACTGGCTGAAATAATGGCTTGTG  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTG-TATCTGTGAATTAAAGACAACTGGCTGAAATAATGGCTTGTG  271

seq1  TCTACAACTCAGCCATAACTACAATTTATAGAGGAGTCTATTGTAATTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACTCAGCCATAACTACAATTTATAGAGGAGTCTATTGTAATTTT  321

seq1  AAATGCTAACTTGCAACACAAACTTAATAGGGTTAATATCAGATTTCCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAACTTGCAACACAAACTTAATAGGGTTAATATCAGATTTCCTG  371

seq1  TTTCAAACATTTCTATTTCCATAAATTCAGCTTCATATAGGTATAGTGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACATTTCTATTTCCATAAATTCAGCTTCATATAGGTATAGTGAC  421

seq1  TATGATTCATTATTTAAATAAAAACAATATTTTAGGCTATTCATGAATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCATTATTTAAATAAAAACAATATTTTAGGCTATTCATGAATTT  471

seq1  TAATCATGTCTATGCTTTTCTTCTCCTGATGTCTTAGACTTAGCCAAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGTCTATGCTTTTCTTCTCCTGATGTCTTAGACTTAGCCAAACT  521

seq1  TTCCTTGCAAAAAGACACTATTAAGTCATCACTGTGTGTCTTGATCTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCAAAAAGACACTATTAAGTCATCACTGTGTGTCTTGATCTTTT  571

seq1  AGAACCTGAGGGGAATTGAATATTTAATCACCCTCTCAAATGCAAGAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGAGGGGAATTGAATATTTAATCACCCTCTCAAATGCAAGAAGT  621

seq1  GAGTGTCTCTACTTTTACTGAATATTTTACTGAACAATGTTGTGCCATTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTCTACTTTTACTGAATATTTTACTGAACAATGTTGTGCCATTG  671

seq1  TTCAAATTTTACGATTATACAAACACATAGGAAACTGAAAAGGCCACGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTTACGATTATACAAACACATAGGAAACTGAAAAGGCCACGTG  721

seq1  GTCACATGATATATATTATGTTGTAAGTATATTAGATTACATACACTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGATATATATTATGTTGTAAGTATATTAGATTACATACACTCAT  771

seq1  CCCAAACATAACCTGTGACACAAACGATGGGAATTGTTTCATCATTCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACATAACCTGTGACACAAACGATGGGAATTGTTTCATCATTCATG  821

seq1  CTAGATAGTATACTTGTTGTTTGTGAGGTTCCAGTATTTTATACTTCCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAGTATACTTGTTGTTTGTGAGGTTCCAGTATTTTATACTTCCAG  871

seq1  GAGGTTCTGAATGATAACTCTAATCCAGGGAATCCATCTCTCCTAGCACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGAATGATAACTCTAATCCAGGGAATCCATCTCTCCTAGCACT  921

seq1  TGCGGGTACTGCACTCAGGTGCTATCATTCTGAATGTATAGGTAAAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTACTGCACTCAGGTGCTATCATTCTGAATGTATAGGTAAAATAT  971

seq1  CCATACACATGATAATAACATGTAATGAGATACATAGTTTTAAGATCTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACATGATAATAACATGTAATGAGATACATAGTTTTAAGATCTAC  1021

seq1  TAGGAGAGACAATCATTCTGTTTGTGGGTAGTGGTAGGAGAAACAAGTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGACAATCATTCTGTTTGTGGGTAGTGGTAGGAGAAACAAGTAA  1071

seq1  TGGACAATAAAACTGATGTCACTGTAAAGTTAGAATGTGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATAAAACTGATGTCACTGTAAAGTTAGAATGTGGAATTC  1116

seq1: chr6_109882446_109883026
seq2: B6Ng01-031O09.g_68_648

seq1  GAATTCAACTCATATACTCTGCAAGAGAAGTTAGTGCTCTTAACAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATATACTCTGCAAGAGAAGTTAGTGCTCTTAACAATTAG  50

seq1  GCCATCTCTTCATCCTTGACTAGACTCCTGTTTTTTTGTTTTGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTTCATCCTTGACTAGACTCCTGTTTTTTTGTTTTGTTTTGTT  100

seq1  TTGTTTTGTTTTTTAATTAATCATTGTATTTGTTTACATTTCAAAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTAATTAATCATTGTATTTGTTTACATTTCAAAGGATA  150

seq1  TTCCCCTTCCAGGTTACCCCTCCACAAACCTCTATCCCACCCCCCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCCAGGTTACCCCTCCACAAACCTCTATCCCACCCCCCCTCTC  200

seq1  CACCCCACCCTTTGCCTCTATGAGAGTACTTCTCTACTTACCCACTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCTTTGCCTCTATGAGAGTACTTCTCTACTTACCCACTCCTG  250

seq1  CTTCACCCTCTATCATCCCCCTACTCTGGGGAATCAAGCCTCTTTACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCTCTATCATCCCCCTACTCTGGGGAATCAAGCCTCTTTACCAC  300

seq1  CCATTGATGTCACAGAAGGCCATCCTCTGCTACATATGTATCTGAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATGTCACAGAAGGCCATCCTCTGCTACATATGTATCTGAAGTCA  350

seq1  TAAGTCCCTCCATGTACACTCATTGTTGGGAGCTCTGGCTAGTCCAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCTCCATGTACACTCATTGTTGGGAGCTCTGGCTAGTCCAGTTA  400

seq1  GTTGATATTGTTCTTCCTATGTAGTTACAATCCACTTCAGTTCCTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATTGTTCTTCCTATGTAGTTACAATCCACTTCAGTTCCTTCAGT  450

seq1  ACTTCCCCTAGTTCTTCCAATGGGGTCCCTGGGCTCAGTTAGATGATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCTAGTTCTTCCAATGGGGTCCCTGGGCTCAGTTAGATGATTGG  500

seq1  CTGTGAGTATCTGCATCTGTATTGGTTAGGTGCTGGTAGAATCTCTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTATCTGCATCTGTATTGGTTAGGTGCTGGTAGAATCTCTCAGG  550

seq1  GAACAGCCATATCAGGCCATTGTCAGCAAGG  581
      |||||||||||||||||||||||||||||||
seq2  GAACAGCCATATCAGGCCATTGTCAGCAAGG  581