BAC Information

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BAC

Clone NameB6Ng01-032B24
Chromosome6 (Build37)
Map Location 115,396,200 - 115,531,736
singlet/doubletdoublet
Overlap genePparg, Tsen2
Upstream geneHrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
Downstream gene2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032B24.bB6Ng01-032B24.g
ACCDH861551DH861552
length1,145939
definitionDH861551|Mus musculus domesticus DNA, BAC clone: B6Ng01-032B24, 5' end.DH861552|Mus musculus domesticus DNA, BAC clone: B6Ng01-032B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,396,200 - 115,397,355)(115,531,008 - 115,531,736)
sequence
gaattccataacaacatcaaagacaaaacaaagaatccctggcaggactt
tcctggggagttgccctcagaactgagaaggtgctgtgctgccgtgctca
tcaggagaagagctgagctgggcttccacatggagccaggattctcaaag
gcattaagaatgccacagtcagctatgtctggacttccagaacaagcatc
ttcaatttctctttgaaggatagaattccctacttagactttgtaggttc
cacagtttatggtcaaaaattttaatatttttaaattctcagagctggta
gtattgttaagagttttttaaaggtatgcttgcactaataaatatcacag
tgaattcagaaaagtctcactaatttattagtctcactaataaacattag
tgagaaatgtttgctttcactttcaccagtataatttggtttttatgtgg
tcttgtttcattggtgttctgatttttacatacatagtcaatattagtaa
acaaataggaacaagaacatgggcagcacaaaggagaagttagaaacaca
agcgctaaaatgagaaataacttaacatttgtctaattggaatcccaaaa
ctgatgaacgagagaaactcagattcagaaaacacaaccaagaaaataag
taaaagaatttctatgcctacacacactatagtaagactacagagtgcca
agggaaagaatgtatacaagcatccagtgagacagaaagatcaccaccaa
catcagttgacaagagatgtatcacagcaagaatggacacacaaacacaa
caggattcaaagtgttagagagtgtgcctagcatcactcaaaaatagaga
ctgcatgaaatgtttacctgtttttaaaaatcactgaaaaatgcatttta
acataaagccagagagaagatgcttataacacatgtgacagacatcaaat
aagcatccagaacatatgaagaatgcctaatgtcctattttagacagatg
tcccattacaaacatagaaaagaaagccagggaactatgtgtgaaatcat
actatgtttacatataatagatctcatgaaacctgaaagttgggcatatg
ttttgtactacaggttacagaattgggagaagctgaggagacaac
gaattctcctttggattcagtccaggacctcagcccatggggatgtgtgg
ctcactatacaggatgggttctccaccagaggtttgtcttctaggtcgtt
ctagattctgttgacaatcaactcatattagccaccataggctctaagtc
tagagatggcttctgctttcccaggagctcttgagagtcttttgacacaa
actgtattggctcctaccttatatttatttttttgatcagcatacaaaat
caggagtttcatgatataattgtcccatgtgtgggtaatttgctaggtga
ggtggaggtagtagacttccctccataccaaatatttgtacttataaatt
caggaactttacagaaaaataaaactgcccatccaaataccatacaacag
ctaagacttcactggaaaccaagacgactggggcagagacagggtctctc
actgaactggaagctcgacattttggctcagctggttggctaacaagctt
tccagatctgcatatctttatcccagtgctggtttacaaagcatgtgcag
ccatgcctggctgtgtacctggatgctgagattcaaattcaggtcctgat
gcgtgtgtagcaagtgctcttaccctttgagccatctcctcagcccctaa
ctccatttcacagatgaagaaactgaggctcagaaaacaccgttcccaag
ggtactcacgttcctggtgctgatgtggaatgtgaagttggggctttctg
attagatttttatcagcatatgccaagggaaggggcaggagggtgtcaga
ggcagagcagttatccagcatgtgtgacacttgggcagactttagggaga
acttatgctgatgaacatgatatgggaaacttactcagttttcctatgaa
gggggcggggggaaactgatcaggagaaggagtctgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115396200_115397355
seq2: B6Ng01-032B24.b_36_1180

seq1  GAATTCCATAACAACATCAAAGACAAAACAAAGAATCCCTGGCAGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACAACATCAAAGACAAAACAAAGAATCCCTGGCAGGACTT  50

seq1  TCCTGGGGAGTTGCCCTCAGAACTGAGAAGGTGCTGTGCTGCCGTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGAGTTGCCCTCAGAACTGAGAAGGTGCTGTGCTGCCGTGCTCA  100

seq1  TCAGGAGAAGAGCTGAGCTGGGCTTCCACATGGAGCCAGGATTCTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAAGAGCTGAGCTGGGCTTCCACATGGAGCCAGGATTCTCAAAG  150

seq1  GCATTAAGAATGCCACAGTCAGCTATGTCTGGACTTCCAGAACAAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGAATGCCACAGTCAGCTATGTCTGGACTTCCAGAACAAGCATC  200

seq1  TTCAATTTCTCTTTGAAGGATAGAATTCCCTACTTAGACTTTGTAGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCTCTTTGAAGGATAGAATTCCCTACTTAGACTTTGTAGGTTC  250

seq1  CACAGTTTATGGTCAAAAATTTTAATATTTTTAAATTCTCAGAGCTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTATGGTCAAAAATTTTAATATTTTTAAATTCTCAGAGCTGGTA  300

seq1  GTATTGTTAAGAGTTTTTTAAAGGTATGCTTGCACTAATAAATATCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTAAGAGTTTTTTAAAGGTATGCTTGCACTAATAAATATCACAG  350

seq1  TGAATTCAGAAAAGTCTCACTAATTTATTAGTCTCACTAATAAACATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGAAAAGTCTCACTAATTTATTAGTCTCACTAATAAACATTAG  400

seq1  TGAGAAATGTTTGCTTTCACTTTCACCAGTATAATTTGGTTTTTATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGTTTGCTTTCACTTTCACCAGTATAATTTGGTTTTTATGTGG  450

seq1  TCTTGTTTCATTGGTGTTCTGATTTTTACATACATAGTCAATATTAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCATTGGTGTTCTGATTTTTACATACATAGTCAATATTAGTAA  500

seq1  ACAAATAGGAACAAGAACATGGGCAGCACAAAGGAGAAGTTAGAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGGAACAAGAACATGGGCAGCACAAAGGAGAAGTTAGAAACACA  550

seq1  AGCGCTAAAATGAGAAATAACTTAACATTTGTCTAATTGGAATCCCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTAAAATGAGAAATAACTTAACATTTGTCTAATTGGAATCCCAAAA  600

seq1  CTGATGAACGAGAGAAACTCAGATTCAGAAAACACAACCAAGAAAATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAACGAGAGAAACTCAGATTCAGAAAACACAACCAAGAAAATAAG  650

seq1  TAAAAGAATTTCTATGCCTACACACACTATAGTAAGACTACAGAGTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATTTCTATGCCTACACACACTATAGTAAGACTACAGAGTGCCA  700

seq1  AGGGAAAGAATGTATACAAGCATCCAGTGAGACAGAAAGATCACCACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGAATGTATACAAGCATCCAGTGAGACAGAAAGATCACCACCAA  750

seq1  CATCAGTTGACAAGAGATGTATCACAGCAAGAATGGACACACAAACACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTGACAAGAGATGTATCACAGCAAGAATGGACACACAAACACAA  800

seq1  CAGGATTCAAAGTGTTAGAGAGTGTGCCTAGCATCACTCAAAAATAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCAAAGTGTTAGAGAGTGTGCCTAGCATCACTCAAAAATAGAGA  850

seq1  CTGCATGAAATGTTTACCTGTTTTTAAAAAATCACTGAAAAATGCATTTT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCATGAAATGTTTACCTGTTTTT-AAAAATCACTGAAAAATGCATTTT  899

seq1  AACATAAAGCCAGAGAGAAGATGCTTATAACACATGTGACAGACATCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGCCAGAGAGAAGATGCTTATAACACATGTGACAGACATCAAA  949

seq1  TAAGCATCCAAGAACATATGAAGAATGCCTAATGTCCTATTTTAGACAAG  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TAAGCATCC-AGAACATATGAAGAATGCCTAATGTCCTATTTTAGAC-AG  997

seq1  ATGTCCCATTACAAACATAGAAAAGAAAAGCCAGGGAACTATGTGTTGAG  1050
      ||||||||||||||||||||||||| ||||||||||||||||||| ||| 
seq2  ATGTCCCATTACAAACATAGAAAAG-AAAGCCAGGGAACTATGTG-TGAA  1045

seq1  ATCATACTTATGTTTTACATATAATAGATTCTCAATGAAACCTGAGAGTT  1100
      ||||||| |||| ||||||||||||||| |||| ||||||||||| ||||
seq2  ATCATAC-TATG-TTTACATATAATAGA-TCTC-ATGAAACCTGAAAGTT  1091

seq1  GGGCATAGTGTTATGTACCTACA-GTTACAGATATGAGAGAGGCTGAGGA  1149
      ||||||| |||| |||| ||||| ||||||||  || |||| ||||||| 
seq2  GGGCATA-TGTTTTGTA-CTACAGGTTACAGAATTGGGAGAAGCTGAGG-  1138

seq1  AGACAAC  1156
      |||||||
seq2  AGACAAC  1145

seq1: chr6_115531008_115531736
seq2: B6Ng01-032B24.g_273_1003 (reverse)

seq1  CCTCAAACTCCTCCTCCTGATCAGCTTCCCCCCGCCCCC-TCATA-GAAA  48
      ||||| |||||| ||||||||||| |||||||||||||| ||||| ||||
seq2  CCTCAGACTCCTTCTCCTGATCAGTTTCCCCCCGCCCCCTTCATAGGAAA  50

seq1  ACTGAGTAAGTTT-CCATATCATGTTTCATCAGCATTAGTTCTCCCTAAA  97
      ||||||||||||| |||||||||| ||||||||||| |||||||||||||
seq2  ACTGAGTAAGTTTCCCATATCATG-TTCATCAGCATAAGTTCTCCCTAAA  99

seq1  GTCTGCCCAAGTGTCACACATGCTGGATAACTGCTCTGCCTCTGACACCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAAGTGTCACACATGCTGGATAACTGCTCTGCCTCTGACACCC  149

seq1  TCCTGCCCCTTCCCTTGGCATATGCTGATAAAAATCTAATCAGAAAGCCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCTTCCCTTGGCATATGCTGATAAAAATCTAATCAGAAAGCCC  199

seq1  CAACTTCACATTCCACATCAGCACCAGGAACGTGAGTACCCTTGGGAACG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCACATTCCACATCAGCACCAGGAACGTGAGTACCCTTGGGAACG  249

seq1  GTGTTTTCTGAGCCTCAGTTTCTTCATCTGTGAAATGGAGTTAGGGGCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTGAGCCTCAGTTTCTTCATCTGTGAAATGGAGTTAGGGGCTG  299

seq1  AGGAGATGGCTCAAAGGGTAAGAGCACTTGCTACACACGCATCAGGACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGCTCAAAGGGTAAGAGCACTTGCTACACACGCATCAGGACCT  349

seq1  GAATTTGAATCTCAGCATCCAGGTACACAGCCAGGCATGGCTGCACATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAATCTCAGCATCCAGGTACACAGCCAGGCATGGCTGCACATGC  399

seq1  TTTGTAAACCAGCACTGGGATAAAGATATGCAGATCTGGAAAGCTTGTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAACCAGCACTGGGATAAAGATATGCAGATCTGGAAAGCTTGTTA  449

seq1  GCCAACCAGCTGAGCCAAAATGTCGAGCTTCCAGTTCAGTGAGAGACCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCAGCTGAGCCAAAATGTCGAGCTTCCAGTTCAGTGAGAGACCCT  499

seq1  GTCTCTGCCCCAGTCGTCTTGGTTTCCAGTGAAGTCTTAGCTGTTGTATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCCCAGTCGTCTTGGTTTCCAGTGAAGTCTTAGCTGTTGTATG  549

seq1  GTATTTGGATGGGCAGTTTTATTTTTCTGTAAAGTTCCTGAATTTATAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGATGGGCAGTTTTATTTTTCTGTAAAGTTCCTGAATTTATAAG  599

seq1  TACAAATATTTGGTATGGAGGGAAGTCTACTACCTCCACCTCACCTAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATTTGGTATGGAGGGAAGTCTACTACCTCCACCTCACCTAGCA  649

seq1  AATTACCCACACATGGGACAATTATATCATGAAACTCCTGATTTTGTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCACACATGGGACAATTATATCATGAAACTCCTGATTTTGTATG  699

seq1  CTGATCAAAAAAATAAATATAAGGTAGGAGCC  729
      ||||||||||||||||||||||||||||||||
seq2  CTGATCAAAAAAATAAATATAAGGTAGGAGCC  731