BAC Information

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BAC

Clone NameB6Ng01-032L05
Chromosome6 (Build37)
Map Location 87,292,562 - 87,434,040
singlet/doubletdoublet
Overlap geneGkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Upstream gene2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
Downstream geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032L05.bB6Ng01-032L05.g
ACCDH861954DH861955
length1,136583
definitionDH861954|Mus musculus domesticus DNA, BAC clone: B6Ng01-032L05, 5' end.DH861955|Mus musculus domesticus DNA, BAC clone: B6Ng01-032L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,292,562 - 87,293,713)(87,433,458 - 87,434,040)
sequence
gaattcattacatacttcctaagtaacggggatcacttacagcacagttg
ttgaccgtgcactcaattcaggaactgtgggaaagagaggaggggaagaa
aaccctcgaagcccggcaaagcagtggatatttttggactgatttcccca
catgttgatagtcccccataaatcatgttttcctaacacagaactgttac
aattacattttctagtccccgttgctctccagtcttgttgtatgaactgt
agtatggctatgccccccacttggatgacttgaccttgctctgagatgta
ccttcataaattttttctttaaagtttctgatatattctcccttcctagt
acctaatactacagctttctatttaattatagaattataatgcagaaaag
agctgtgtgcgttttctcttccgaagcatcatgtggacagaagagcctta
gaagccgtgacttgtgggaactggggttatgtgcctgcctaaatgccacc
ctgggtattaaaaagaggtaaacaatgaaacaagcaaagcaaagctgggg
cagagggaggaaacttggagaacagcaatggttttaaagagcttggcgtt
tctaggagaagacagccatgtgctctaatcggaccacagaggcagagcac
tgaaacatcttctttagctttagcaactagaaaatctttggtgatttttt
aatgaattatgaaaatatagtgacttgttggagagaaactgacacttcag
ctgatgtaaaccaacatgcagcctcagggaaaggcggagtgataattggt
ttaaataccatcttgccacaacccagaatgacctgagcaggaatccttaa
ctgagcgattgtctttatctggttggtctgtgggaggaactgtggggcac
tgacttgattgtaattgatttaggaaggtctggcccaccgtgggcagcac
tattctctagcaagtggtccctgaactgtataagaaagccagctaagcat
ggagctgagcaatctaccaagctcctcatgtaatctgctgactctgccct
gaaaacctcagatataactttgactggaatgtagccagacaaacctttcc
ttccggtttgttttgtgagatactgcttttctgtcc
gaattccacatggcaggagaaggtggtgtcaaagaggagtcctgattcct
gcctggggaatgacagacggatgaatgcttggttggcagtgtgagaccga
atgccccaggccctccctggcaagactgtccttgcctgaatctctgcgag
ggttctagggtgctggggtcagttgcaggaggtctgctccatcttcctga
caggaggggcgggagctggctcccttcgcccaccagcctacctctgagat
cattgtctcagaagaccctgactgagccttgcctgcctctgaaagccttt
ccaggagagtgtgggctggcttcataaaggctaagtgccgttctgtgttc
ctgccagacagtttgatatacggtgcaatgctggtaaacgctggcgtgtg
ggattttcttcctttctctctttcttttagcccacctcatagctgtcccc
tgaatggcggctgacaattagctgctaagtaaaaggaggcacttattttt
attgtgctctgacagctttatgtttactctctgaaagccaagggagcctc
ttgtgtgtaaaggtgagtagggaggagtgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87292562_87293713
seq2: B6Ng01-032L05.b_46_1181

seq1  GAATTCATTACATACTTCCTAAGTAACGGGGATCACTTACAGCACAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATACTTCCTAAGTAACGGGGATCACTTACAGCACAGTTG  50

seq1  TTGACCGTGCACTCAATTCAGGAACTGTGGGAAAGAGAGGAGGGGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCGTGCACTCAATTCAGGAACTGTGGGAAAGAGAGGAGGGGAAGAA  100

seq1  AACCCTCGAAGCCCGGCAAAGCAGTGGATATTTTTGGACTGATTTCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCGAAGCCCGGCAAAGCAGTGGATATTTTTGGACTGATTTCCCCA  150

seq1  CATGTTGATAGTCCCCCATAAATCATGTTTTCCTAACACAGAACTGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGATAGTCCCCCATAAATCATGTTTTCCTAACACAGAACTGTTAC  200

seq1  AATTACATTTTCTAGTCCCCGTTGCTCTCCAGTCTTGTTGTATGAACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTTTCTAGTCCCCGTTGCTCTCCAGTCTTGTTGTATGAACTGT  250

seq1  AGTATGGCTATGCCCCCCACTTGGATGACTTGACCTTGCTCTGAGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGCTATGCCCCCCACTTGGATGACTTGACCTTGCTCTGAGATGTA  300

seq1  CCTTCATAAATTTTTTCTTTAAAGTTTCTGATATATTCTCCCTTCCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATAAATTTTTTCTTTAAAGTTTCTGATATATTCTCCCTTCCTAGT  350

seq1  ACCTAATACTACAGCTTTCTATTTAATTATAGAATTATAATGCAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATACTACAGCTTTCTATTTAATTATAGAATTATAATGCAGAAAAG  400

seq1  AGCTGTGTGCGTTTTCTCTTCCGAAGCATCATGTGGACAGAAGAGCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTGCGTTTTCTCTTCCGAAGCATCATGTGGACAGAAGAGCCTTA  450

seq1  GAAGCCGTGACTTGTGGGAACTGGGGTTATGTGCCTGCCTAAATGCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGTGACTTGTGGGAACTGGGGTTATGTGCCTGCCTAAATGCCACC  500

seq1  CTGGGTATTAAAAAGAGGTAAACAATGAAACAAGCAAAGCAAAGCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATTAAAAAGAGGTAAACAATGAAACAAGCAAAGCAAAGCTGGGG  550

seq1  CAGAGGGAGGAAACTTGGAGAACAGCAATGGTTTTAAAGAGCTTGGCGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAGGAAACTTGGAGAACAGCAATGGTTTTAAAGAGCTTGGCGTT  600

seq1  TCTAGGAGAAGACAGCCATGTGCTCTAATCGGACCACAGAGGCAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGAAGACAGCCATGTGCTCTAATCGGACCACAGAGGCAGAGCAC  650

seq1  TGAAACATCTTCTTTAGCTTTAGCAACTAGAAAATCTTTGGTGATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCTTCTTTAGCTTTAGCAACTAGAAAATCTTTGGTGATTTTTT  700

seq1  AATGAATTATGAAAATATAGTGACTTGTTGGAGAGAAACTGACACTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTATGAAAATATAGTGACTTGTTGGAGAGAAACTGACACTTCAG  750

seq1  CTGATGTAAACCAACATGCAGCCTCAGGGAAAGGCGGAGTGATAATTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAAACCAACATGCAGCCTCAGGGAAAGGCGGAGTGATAATTGGT  800

seq1  TTAAATACCATCTTGCCACAACCCAGAATGACCTGAGCAGGAATCCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACCATCTTGCCACAACCCAGAATGACCTGAGCAGGAATCCTTAA  850

seq1  CTGAGCGATTGTCTTTATCTGGTTGGTCTGTGGGAGGAACTGTGGGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGATTGTCTTTATCTGGTTGGTCTGTGGGAGGAACTGTGGGGCAC  900

seq1  TGACTTGATTGTTAATTGATTTAGGAAGGTCTGGCCCACCGTGGGCAGCA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGATTG-TAATTGATTTAGGAAGGTCTGGCCCACCGTGGGCAGCA  949

seq1  CTATTCTCTAGGCAGGTGGTCCCTGAACTGTATAAGAAAGCCAGCTAAGC  1000
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTA-GCAAGTGGTCCCTGAACTGTATAAGAAAGCCAGCTAAGC  998

seq1  ATGAGCCTGAGCAATCTACCAAGCTCCATCATGGTATCTGCTTGACTTCC  1050
      |||   ||||||||||||||||||||| |||||  |||||| |||||  |
seq2  ATGGAGCTGAGCAATCTACCAAGCTCC-TCATGTAATCTGC-TGACT--C  1044

seq1  TGCCCTGATAACCCTCAGTATTAACCTTTGACCTGGAAATGTAAGCCAGA  1100
      |||||||| || |||||| ||  | |||||| |||| ||||| |||||||
seq2  TGCCCTGA-AAACCTCAG-ATATAACTTTGA-CTGG-AATGT-AGCCAGA  1089

seq1  CAAACCCTTTCCTCTCGTGTTGTTTTTGTGAGTTTCATTGCTTTTACTGT  1150
      |||| |||||||| ||  |||  ||||||||| |  | ||||||| ||||
seq2  CAAA-CCTTTCCT-TCCGGTTTGTTTTGTGAGAT--ACTGCTTTT-CTGT  1134

seq1  CC  1152
      ||
seq2  CC  1136

seq1: chr6_87433458_87434040
seq2: B6Ng01-032L05.g_66_648 (reverse)

seq1  CCAACACTCCTCCCTACTCACCTTTACACACAAGAGGCTCCCTTGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTCCTCCCTACTCACCTTTACACACAAGAGGCTCCCTTGGCTTT  50

seq1  CAGAGAGTAAACATAAAGCTGTCAGAGCACAATAAAAATAAGTGCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTAAACATAAAGCTGTCAGAGCACAATAAAAATAAGTGCCTCCT  100

seq1  TTTACTTAGCAGCTAATTGTCAGCCGCCATTCAGGGGACAGCTATGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGCAGCTAATTGTCAGCCGCCATTCAGGGGACAGCTATGAGGT  150

seq1  GGGCTAAAAGAAAGAGAGAAAGGAAGAAAATCCCACACGCCAGCGTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAAAGAAAGAGAGAAAGGAAGAAAATCCCACACGCCAGCGTTTAC  200

seq1  CAGCATTGCACCGTATATCAAACTGTCTGGCAGGAACACAGAACGGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGCACCGTATATCAAACTGTCTGGCAGGAACACAGAACGGCACT  250

seq1  TAGCCTTTATGAAGCCAGCCCACACTCTCCTGGAAAGGCTTTCAGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTATGAAGCCAGCCCACACTCTCCTGGAAAGGCTTTCAGAGGCA  300

seq1  GGCAAGGCTCAGTCAGGGTCTTCTGAGACAATGATCTCAGAGGTAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCTCAGTCAGGGTCTTCTGAGACAATGATCTCAGAGGTAGGCTG  350

seq1  GTGGGCGAAGGGAGCCAGCTCCCGCCCCTCCTGTCAGGAAGATGGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGAAGGGAGCCAGCTCCCGCCCCTCCTGTCAGGAAGATGGAGCAG  400

seq1  ACCTCCTGCAACTGACCCCAGCACCCTAGAACCCTCGCAGAGATTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGCAACTGACCCCAGCACCCTAGAACCCTCGCAGAGATTCAGGC  450

seq1  AAGGACAGTCTTGCCAGGGAGGGCCTGGGGCATTCGGTCTCACACTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGTCTTGCCAGGGAGGGCCTGGGGCATTCGGTCTCACACTGCCA  500

seq1  ACCAAGCATTCATCCGTCTGTCATTCCCCAGGCAGGAATCAGGACTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATTCATCCGTCTGTCATTCCCCAGGCAGGAATCAGGACTCCTC  550

seq1  TTTGACACCACCTTCTCCTGCCATGTGGAATTC  583
      |||||||||||||||||||||||||||||||||
seq2  TTTGACACCACCTTCTCCTGCCATGTGGAATTC  583